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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 7029.ACYPI061188-PA |
| ProteomeId | EsuBft3338_2 |
| Protein domains | SSF56672 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon 297 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 33208|Metazoa |
| Length | 1119 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.47e-20 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,41WI3@6656|Arthropoda,3SIRK@50557|Insecta,3ECJT@33342|Paraneoptera |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | K02A2.6-like |
| COG category | O |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft3338_2a-0001 ID=EsuBft3338_2a-0001|Name=EsuBft3338_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1119bp|location=Sequence derived from alignment at Scaffold_344:302808..305449+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCCGCAGGGCGCCAACGCAAGTCCGTCTTGGTTCGTCAAGGTCATCAA
CAGAGTGGTGCACGGTCTGGAGCGTGTGCTTGCTTATCTGGACAATGCCT
TCTGTTTCGATGAGGAACCTCTGGGACACGTACTGAACTTGATCGAGTTC
TTCAAACGACAGCGACAGTACAACCTCAAACTGCCTGGGAAGGCTCGCGT
CGGCGCCACGCAGGTCAACTTTCTCGGTCACACCATCTCTCCGGCAGGTG
TTAGCCCTGATGGCGTCCAGGTTAGGGCGCTCACGCACATGCCGCCGCCG
CCGAATGTTAAGCAGCTTCGGAGCCTTCTCGGTGGACTCAGTTACTACCG
GATATTCCTCAAGAATCTCGCCACCAAGATGCGGCCTCTCAACTCTCTTC
TTAAACAAGGCGTCCCCTTCAAGTACACACCCGGGCATGGTCAAGGTTGG
CATCAAAGCTTGGCCCGCGATCAACTCGAGTATTGCAACCTGGCTGTCGA
TCGCCAGCGCCGGGCCTACGAACTTGTCCGTGAGTACAACGCGCTGAAGA
TTTCGCGAGTCGAACGCCGGAATTCATCCCTGCTGGACGCCATTCACAAG
CTCCCTCAGTTTACCGTTGGCGGGTGTGCTTGGGTGTACAACACGGCTGC
TACGATTCGACAGGGTGTGCAGAAGGACACGGACCAACAGGTGCTCAAGG
CCAAATTCGCACTTTCCTGGACGGGGCCGTACAAAGTTCTTGCGGTGGGT
CCCACCTCTGCCGACGCCACTCCGGACGGCCGCTCGTTGGCGCGTAAACT
CTTCTACCTGGACCTGCCTTCCGGTCTTTCCGGCCCGGCAGCTCGTTGTC
ATGTGTCTGTCCTTCGTTGCAAGCCCTGTCGCAATTCATACGAGACGGAC
GACTTGCCGCAATCTCTGCCCGCCGAGCTTTCGCGTTATGTTCTGCACTC
TTTCGGAGATAAATGTCCACCTTTCCACGTCACCGTGGATGATGTGTCGG
TGCCTGTCGGGCGCCTCGAGGTCGACTACATCTCGGGACATCAACTGGTG
CGGGGCCGTAGCGGCGTCCTCGCTGTCCTGTACCAGACGCATTGGGTAGG
CCTGACTACTCCTTCATAG back to topprotein sequence of EsuBft3338_2a-0001 >EsuBft3338_2 ID=EsuBft3338_2|Name=EsuBft3338_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=372bp
MPQGANASPSWFVKVINRVVHGLERVLAYLDNAFCFDEEPLGHVLNLIEF
FKRQRQYNLKLPGKARVGATQVNFLGHTISPAGVSPDGVQVRALTHMPPP
PNVKQLRSLLGGLSYYRIFLKNLATKMRPLNSLLKQGVPFKYTPGHGQGW
HQSLARDQLEYCNLAVDRQRRAYELVREYNALKISRVERRNSSLLDAIHK
LPQFTVGGCAWVYNTAATIRQGVQKDTDQQVLKAKFALSWTGPYKVLAVG
PTSADATPDGRSLARKLFYLDLPSGLSGPAARCHVSVLRCKPCRNSYETD
DLPQSLPAELSRYVLHSFGDKCPPFHVTVDDVSVPVGRLEVDYISGHQLV
RGRSGVLAVLYQTHWVGLTTPS back to topmRNA from alignment at Scaffold_344:302808..305449+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft3338_2a-0001 ID=EsuBft3338_2a-0001|Name=EsuBft3338_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2642bp|location=Sequence derived from alignment at Scaffold_344:302808..305449+ (Ectocarpus subulatus male Bft15b)
ATGCCGCAGGGCGCCAACGCAAGTCCGTCTTGGTTCGTCAAGGTCATCAA
CAGAGTGGTGCACGGTCTGGAGCGTGTGCTTGCTTATCTGGACAATGCCT
TCTGTTTCGATGAGGAACCTCTGGGACACGTACTGAACTTGATCGAGTTC
TTCAAACGACAGCGACAGTACAACCTCAAACTGCCTGGGAAGGCTCGCGT
CGGCGCCACGCAGGTCAACTTTCTCGGTCACACCATCTCTCCGGCAGGTG
TTAGCCCTGATGGCGTCCAGGTTAGGGCGCTCACGCACATGCCGCCGCCG
CCGAATGTTAAGCAGCTTCGGAGCCTTCTCGGTGGACTCAGTTACTACCG
GATATTCCTCAAGAATCTCGCCACCAAGATGCGGCCTCTCAACTCTCTTC
TTAAACAAGGCGTCCCCTTCAAGTACACACCCGGGCATGGTCAAGGTTGT
CAAAACGTTGTTAAGCGAACTCGCTCGCCCCCCGATTTTGGTCTTCCCGG
ATTGGGCAGCAATCGAGGACAACAGTCGTCCTCTTCGTTTGTGTTCCGAC
GCGTGTATCGACGGTGTTGGCGCCTCCTTGGAACAAGATCAGCTCGATGG
CTCGGTGAGACCCATCGTGTACATCAGCCGCGCCACCCTTCCTGCGGAGC
GTAACTGGACCGTTTTGGATCTGGAGGGCTGGTGGCATTGTTTGGGCCAT
CAAACGCCTTCGCGGCTATCTGTGGTCGACCAAGTTCATCATCTATTCGG
ACCACAAAGCATTGGAGAGCAATGGCAAGGTTGGGGAACACAACGCTAGG
GTGCAACGATGGCTCGAATTCCTGTCCAACTTCACCTACACCCTGAAATA
TCGGAAAGGTTCGGCAAACGGCAACGCGGATTTTCTTTCGCGGTTGCCTT
TACCAGCACAAGACACGAACAAAACCGGCCCCGACTGCATTGATGGTGTC
GATCAAGCGAGTGTTTTCCTCATTTGGCCTTGCGGGCGCAACTATCACTC
GTCGTCTACACCGGAGGTCGGCTTGGGTGGGCTCCGCCCCCCTTGCACGG
CAGGAGTCTTTTCGCCCCCAGCGTTGCAGCCCTCCGATTTTGGGTATTTT
CGCCGACATCATCCGCGTCGGTTGGATGCTCTGACGGACTCAACGATTGC
CTGCGAGAATTTTCAGCGGTCCCCGGGGGTCTTCATCGTCTCGCCTGTTC
TCGCATCTTCAGGGCCTGCTTCCTCATTGACTTCGGATGCGTCCCGCGTG
ATATCTCCTGTCGCGCCTTTGGCGACTAGATATGTGCACGTTGTGTCTTC
GCTTCCGGAGCAGGGACCGCTCATTTCTTCACGGACTCGGGCCAAAACTA
CCGCTTTTTCTGGAGGCACCGTCACCGGTCCCGCTTATTTCGGACGCCAG
CCGCGGGCTACCATCGTCCCTCGGACATCGTCGCCTGCCCGTCGCTCTAG
CAGGTCCCGCTCGACAAACAAGACCACCCGGACCGCCGCGCGTCTGCTGC
CGCCATCCGCAACGCCGGCATCGGCATTTTCGTCGACTGCTCTTGCGCCA
CCGGTGTCTTCGCAGTCAGCGGCGCGCCCTGCATCCCCGACTTCGCCTTC
TCTACAAGTTTCGCCCGGGACTTCGCCACTCACGTTGTCCCCTTCGCGGA
CATCACCACGGACTGCGGCTGCCCCAGTCGCTGAGGCTTCGCCTTCTTCC
GCCTCTTCCNNNNNNNNNNNNNNNNNNNTCACCACCAGCTCCTACCACCC
ACAGACCAACGGCGGCACGGAACGCGTCAACCACACGATGGCCCAGATGC
TTGCGGTGGTCGTCAACGAACAGCAAAACGATTGGGACATACATCTCCCA
CACGTTGAGTTTGCCTACAACAAGTCCGTGAACCAGTCTACTGGATTAGT
GCCAAACGAGATCTACATCGGACGCATACCGTGACTCCCGCTTTCGGTTT
TCGATTGTCCCACGGTAGGTTGGCATCAAAGCTTGGCCCGCGATCAACTC
GAGTATTGCAACCTGGCTGTCGATCGCCAGCGCCGGGCCTACGAACTTGT
CCGTGAGTACAACGCGCTGAAGATTTCGCGAGTCGAACGCCGGAATTCAT
CCCTGCTGGACGCCATTCACAAGCTCCCTCAGTTTACCGTTGGCGGGTGT
GCTTGGGTGTACAACACGGCTGCTACGATTCGACAGGGTGTGCAGAAGGA
CACGGACCAACAGGTGCTCAAGGCCAAATTCGCACTTTCCTGGACGGGGC
CGTACAAAGTTCTTGCGGTGGGTCCCACCTCTGCCGACGCCACTCCGGAC
GGCCGCTCGTTGGCGCGTAAACTCTTCTACCTGGACCTGCCTTCCGGTCT
TTCCGGCCCGGCAGCTCGTTGTCATGTGTCTGTCCTTCGTTGCAAGCCCT
GTCGCAATTCATACGAGACGGACGACTTGCCGCAATCTCTGCCCGCCGAG
CTTTCGCGTTATGTTCTGCACTCTTTCGGAGATAAATGTCCACCTTTCCA
CGTCACCGTGGATGATGTGTCGGTGCCTGTCGGGCGCCTCGAGGTCGACT
ACATCTCGGGACATCAACTGGTGCGGGGCCGTAGCGGCGTCCTCGCTGTC
CTGTACCAGACGCATTGGGTAGGCCTGACTACTCCTTCATAG back to topCoding sequence (CDS) from alignment at Scaffold_344:302808..305449+ >EsuBft3338_2a-0001 ID=EsuBft3338_2a-0001|Name=EsuBft3338_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1119bp|location=Sequence derived from alignment at Scaffold_344:302808..305449+ (Ectocarpus subulatus male Bft15b)
ATGCCGCAGGGCGCCAACGCAAGTCCGTCTTGGTTCGTCAAGGTCATCAA
CAGAGTGGTGCACGGTCTGGAGCGTGTGCTTGCTTATCTGGACAATGCCT
TCTGTTTCGATGAGGAACCTCTGGGACACGTACTGAACTTGATCGAGTTC
TTCAAACGACAGCGACAGTACAACCTCAAACTGCCTGGGAAGGCTCGCGT
CGGCGCCACGCAGGTCAACTTTCTCGGTCACACCATCTCTCCGGCAGGTG
TTAGCCCTGATGGCGTCCAGGTTAGGGCGCTCACGCACATGCCGCCGCCG
CCGAATGTTAAGCAGCTTCGGAGCCTTCTCGGTGGACTCAGTTACTACCG
GATATTCCTCAAGAATCTCGCCACCAAGATGCGGCCTCTCAACTCTCTTC
TTAAACAAGGCGTCCCCTTCAAGTACACACCCGGGCATGGTCAAGGTTGG
CATCAAAGCTTGGCCCGCGATCAACTCGAGTATTGCAACCTGGCTGTCGA
TCGCCAGCGCCGGGCCTACGAACTTGTCCGTGAGTACAACGCGCTGAAGA
TTTCGCGAGTCGAACGCCGGAATTCATCCCTGCTGGACGCCATTCACAAG
CTCCCTCAGTTTACCGTTGGCGGGTGTGCTTGGGTGTACAACACGGCTGC
TACGATTCGACAGGGTGTGCAGAAGGACACGGACCAACAGGTGCTCAAGG
CCAAATTCGCACTTTCCTGGACGGGGCCGTACAAAGTTCTTGCGGTGGGT
CCCACCTCTGCCGACGCCACTCCGGACGGCCGCTCGTTGGCGCGTAAACT
CTTCTACCTGGACCTGCCTTCCGGTCTTTCCGGCCCGGCAGCTCGTTGTC
ATGTGTCTGTCCTTCGTTGCAAGCCCTGTCGCAATTCATACGAGACGGAC
GACTTGCCGCAATCTCTGCCCGCCGAGCTTTCGCGTTATGTTCTGCACTC
TTTCGGAGATAAATGTCCACCTTTCCACGTCACCGTGGATGATGTGTCGG
TGCCTGTCGGGCGCCTCGAGGTCGACTACATCTCGGGACATCAACTGGTG
CGGGGCCGTAGCGGCGTCCTCGCTGTCCTGTACCAGACGCATTGGGTAGG
CCTGACTACTCCTTCATAG back to top
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