EsuBft3338_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3338_2a-0001
Unique NameEsuBft3338_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:302808..305449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7029.ACYPI061188-PA
ProteomeIdEsuBft3338_2
Protein domainsSSF56672
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon 297 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation]
Nb exon2
Max annot lvl33208|Metazoa
Length1119
Hectar predicted targeting categoryother localisation
Evalue1.47e-20
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,41WI3@6656|Arthropoda,3SIRK@50557|Insecta,3ECJT@33342|Paraneoptera
Date last modified2016-06-14
Date creation2016-06-14
DescriptionK02A2.6-like
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3338_2aEsuBft3338_2aEctocarpus subulatus male Bft15bgeneScaffold_344 302808..305449 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3338_2a-0001-exonagat-exon-43620Ectocarpus subulatus male Bft15bexonScaffold_344 302808..303252 +
EsuBft3338_2a-0001-exonEsuBft3338_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 304776..305449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3338_2a-0001-cdsEsuBft3338_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 302808..303252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3338_2a-0001EsuBft3338_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 302808..305449 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3338_2a-0001 ID=EsuBft3338_2a-0001|Name=EsuBft3338_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1119bp|location=Sequence derived from alignment at Scaffold_344:302808..305449+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCAGGGCGCCAACGCAAGTCCGTCTTGGTTCGTCAAGGTCATCAA
CAGAGTGGTGCACGGTCTGGAGCGTGTGCTTGCTTATCTGGACAATGCCT
TCTGTTTCGATGAGGAACCTCTGGGACACGTACTGAACTTGATCGAGTTC
TTCAAACGACAGCGACAGTACAACCTCAAACTGCCTGGGAAGGCTCGCGT
CGGCGCCACGCAGGTCAACTTTCTCGGTCACACCATCTCTCCGGCAGGTG
TTAGCCCTGATGGCGTCCAGGTTAGGGCGCTCACGCACATGCCGCCGCCG
CCGAATGTTAAGCAGCTTCGGAGCCTTCTCGGTGGACTCAGTTACTACCG
GATATTCCTCAAGAATCTCGCCACCAAGATGCGGCCTCTCAACTCTCTTC
TTAAACAAGGCGTCCCCTTCAAGTACACACCCGGGCATGGTCAAGGTTGG
CATCAAAGCTTGGCCCGCGATCAACTCGAGTATTGCAACCTGGCTGTCGA
TCGCCAGCGCCGGGCCTACGAACTTGTCCGTGAGTACAACGCGCTGAAGA
TTTCGCGAGTCGAACGCCGGAATTCATCCCTGCTGGACGCCATTCACAAG
CTCCCTCAGTTTACCGTTGGCGGGTGTGCTTGGGTGTACAACACGGCTGC
TACGATTCGACAGGGTGTGCAGAAGGACACGGACCAACAGGTGCTCAAGG
CCAAATTCGCACTTTCCTGGACGGGGCCGTACAAAGTTCTTGCGGTGGGT
CCCACCTCTGCCGACGCCACTCCGGACGGCCGCTCGTTGGCGCGTAAACT
CTTCTACCTGGACCTGCCTTCCGGTCTTTCCGGCCCGGCAGCTCGTTGTC
ATGTGTCTGTCCTTCGTTGCAAGCCCTGTCGCAATTCATACGAGACGGAC
GACTTGCCGCAATCTCTGCCCGCCGAGCTTTCGCGTTATGTTCTGCACTC
TTTCGGAGATAAATGTCCACCTTTCCACGTCACCGTGGATGATGTGTCGG
TGCCTGTCGGGCGCCTCGAGGTCGACTACATCTCGGGACATCAACTGGTG
CGGGGCCGTAGCGGCGTCCTCGCTGTCCTGTACCAGACGCATTGGGTAGG
CCTGACTACTCCTTCATAG
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protein sequence of EsuBft3338_2a-0001

>EsuBft3338_2 ID=EsuBft3338_2|Name=EsuBft3338_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=372bp
MPQGANASPSWFVKVINRVVHGLERVLAYLDNAFCFDEEPLGHVLNLIEF
FKRQRQYNLKLPGKARVGATQVNFLGHTISPAGVSPDGVQVRALTHMPPP
PNVKQLRSLLGGLSYYRIFLKNLATKMRPLNSLLKQGVPFKYTPGHGQGW
HQSLARDQLEYCNLAVDRQRRAYELVREYNALKISRVERRNSSLLDAIHK
LPQFTVGGCAWVYNTAATIRQGVQKDTDQQVLKAKFALSWTGPYKVLAVG
PTSADATPDGRSLARKLFYLDLPSGLSGPAARCHVSVLRCKPCRNSYETD
DLPQSLPAELSRYVLHSFGDKCPPFHVTVDDVSVPVGRLEVDYISGHQLV
RGRSGVLAVLYQTHWVGLTTPS
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mRNA from alignment at Scaffold_344:302808..305449+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3338_2a-0001 ID=EsuBft3338_2a-0001|Name=EsuBft3338_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2642bp|location=Sequence derived from alignment at Scaffold_344:302808..305449+ (Ectocarpus subulatus male Bft15b)
ATGCCGCAGGGCGCCAACGCAAGTCCGTCTTGGTTCGTCAAGGTCATCAA
CAGAGTGGTGCACGGTCTGGAGCGTGTGCTTGCTTATCTGGACAATGCCT
TCTGTTTCGATGAGGAACCTCTGGGACACGTACTGAACTTGATCGAGTTC
TTCAAACGACAGCGACAGTACAACCTCAAACTGCCTGGGAAGGCTCGCGT
CGGCGCCACGCAGGTCAACTTTCTCGGTCACACCATCTCTCCGGCAGGTG
TTAGCCCTGATGGCGTCCAGGTTAGGGCGCTCACGCACATGCCGCCGCCG
CCGAATGTTAAGCAGCTTCGGAGCCTTCTCGGTGGACTCAGTTACTACCG
GATATTCCTCAAGAATCTCGCCACCAAGATGCGGCCTCTCAACTCTCTTC
TTAAACAAGGCGTCCCCTTCAAGTACACACCCGGGCATGGTCAAGGTTGT
CAAAACGTTGTTAAGCGAACTCGCTCGCCCCCCGATTTTGGTCTTCCCGG
ATTGGGCAGCAATCGAGGACAACAGTCGTCCTCTTCGTTTGTGTTCCGAC
GCGTGTATCGACGGTGTTGGCGCCTCCTTGGAACAAGATCAGCTCGATGG
CTCGGTGAGACCCATCGTGTACATCAGCCGCGCCACCCTTCCTGCGGAGC
GTAACTGGACCGTTTTGGATCTGGAGGGCTGGTGGCATTGTTTGGGCCAT
CAAACGCCTTCGCGGCTATCTGTGGTCGACCAAGTTCATCATCTATTCGG
ACCACAAAGCATTGGAGAGCAATGGCAAGGTTGGGGAACACAACGCTAGG
GTGCAACGATGGCTCGAATTCCTGTCCAACTTCACCTACACCCTGAAATA
TCGGAAAGGTTCGGCAAACGGCAACGCGGATTTTCTTTCGCGGTTGCCTT
TACCAGCACAAGACACGAACAAAACCGGCCCCGACTGCATTGATGGTGTC
GATCAAGCGAGTGTTTTCCTCATTTGGCCTTGCGGGCGCAACTATCACTC
GTCGTCTACACCGGAGGTCGGCTTGGGTGGGCTCCGCCCCCCTTGCACGG
CAGGAGTCTTTTCGCCCCCAGCGTTGCAGCCCTCCGATTTTGGGTATTTT
CGCCGACATCATCCGCGTCGGTTGGATGCTCTGACGGACTCAACGATTGC
CTGCGAGAATTTTCAGCGGTCCCCGGGGGTCTTCATCGTCTCGCCTGTTC
TCGCATCTTCAGGGCCTGCTTCCTCATTGACTTCGGATGCGTCCCGCGTG
ATATCTCCTGTCGCGCCTTTGGCGACTAGATATGTGCACGTTGTGTCTTC
GCTTCCGGAGCAGGGACCGCTCATTTCTTCACGGACTCGGGCCAAAACTA
CCGCTTTTTCTGGAGGCACCGTCACCGGTCCCGCTTATTTCGGACGCCAG
CCGCGGGCTACCATCGTCCCTCGGACATCGTCGCCTGCCCGTCGCTCTAG
CAGGTCCCGCTCGACAAACAAGACCACCCGGACCGCCGCGCGTCTGCTGC
CGCCATCCGCAACGCCGGCATCGGCATTTTCGTCGACTGCTCTTGCGCCA
CCGGTGTCTTCGCAGTCAGCGGCGCGCCCTGCATCCCCGACTTCGCCTTC
TCTACAAGTTTCGCCCGGGACTTCGCCACTCACGTTGTCCCCTTCGCGGA
CATCACCACGGACTGCGGCTGCCCCAGTCGCTGAGGCTTCGCCTTCTTCC
GCCTCTTCCNNNNNNNNNNNNNNNNNNNTCACCACCAGCTCCTACCACCC
ACAGACCAACGGCGGCACGGAACGCGTCAACCACACGATGGCCCAGATGC
TTGCGGTGGTCGTCAACGAACAGCAAAACGATTGGGACATACATCTCCCA
CACGTTGAGTTTGCCTACAACAAGTCCGTGAACCAGTCTACTGGATTAGT
GCCAAACGAGATCTACATCGGACGCATACCGTGACTCCCGCTTTCGGTTT
TCGATTGTCCCACGGTAGGTTGGCATCAAAGCTTGGCCCGCGATCAACTC
GAGTATTGCAACCTGGCTGTCGATCGCCAGCGCCGGGCCTACGAACTTGT
CCGTGAGTACAACGCGCTGAAGATTTCGCGAGTCGAACGCCGGAATTCAT
CCCTGCTGGACGCCATTCACAAGCTCCCTCAGTTTACCGTTGGCGGGTGT
GCTTGGGTGTACAACACGGCTGCTACGATTCGACAGGGTGTGCAGAAGGA
CACGGACCAACAGGTGCTCAAGGCCAAATTCGCACTTTCCTGGACGGGGC
CGTACAAAGTTCTTGCGGTGGGTCCCACCTCTGCCGACGCCACTCCGGAC
GGCCGCTCGTTGGCGCGTAAACTCTTCTACCTGGACCTGCCTTCCGGTCT
TTCCGGCCCGGCAGCTCGTTGTCATGTGTCTGTCCTTCGTTGCAAGCCCT
GTCGCAATTCATACGAGACGGACGACTTGCCGCAATCTCTGCCCGCCGAG
CTTTCGCGTTATGTTCTGCACTCTTTCGGAGATAAATGTCCACCTTTCCA
CGTCACCGTGGATGATGTGTCGGTGCCTGTCGGGCGCCTCGAGGTCGACT
ACATCTCGGGACATCAACTGGTGCGGGGCCGTAGCGGCGTCCTCGCTGTC
CTGTACCAGACGCATTGGGTAGGCCTGACTACTCCTTCATAG
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Coding sequence (CDS) from alignment at Scaffold_344:302808..305449+

>EsuBft3338_2a-0001 ID=EsuBft3338_2a-0001|Name=EsuBft3338_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1119bp|location=Sequence derived from alignment at Scaffold_344:302808..305449+ (Ectocarpus subulatus male Bft15b)
ATGCCGCAGGGCGCCAACGCAAGTCCGTCTTGGTTCGTCAAGGTCATCAA
CAGAGTGGTGCACGGTCTGGAGCGTGTGCTTGCTTATCTGGACAATGCCT
TCTGTTTCGATGAGGAACCTCTGGGACACGTACTGAACTTGATCGAGTTC
TTCAAACGACAGCGACAGTACAACCTCAAACTGCCTGGGAAGGCTCGCGT
CGGCGCCACGCAGGTCAACTTTCTCGGTCACACCATCTCTCCGGCAGGTG
TTAGCCCTGATGGCGTCCAGGTTAGGGCGCTCACGCACATGCCGCCGCCG
CCGAATGTTAAGCAGCTTCGGAGCCTTCTCGGTGGACTCAGTTACTACCG
GATATTCCTCAAGAATCTCGCCACCAAGATGCGGCCTCTCAACTCTCTTC
TTAAACAAGGCGTCCCCTTCAAGTACACACCCGGGCATGGTCAAGGTTGG
CATCAAAGCTTGGCCCGCGATCAACTCGAGTATTGCAACCTGGCTGTCGA
TCGCCAGCGCCGGGCCTACGAACTTGTCCGTGAGTACAACGCGCTGAAGA
TTTCGCGAGTCGAACGCCGGAATTCATCCCTGCTGGACGCCATTCACAAG
CTCCCTCAGTTTACCGTTGGCGGGTGTGCTTGGGTGTACAACACGGCTGC
TACGATTCGACAGGGTGTGCAGAAGGACACGGACCAACAGGTGCTCAAGG
CCAAATTCGCACTTTCCTGGACGGGGCCGTACAAAGTTCTTGCGGTGGGT
CCCACCTCTGCCGACGCCACTCCGGACGGCCGCTCGTTGGCGCGTAAACT
CTTCTACCTGGACCTGCCTTCCGGTCTTTCCGGCCCGGCAGCTCGTTGTC
ATGTGTCTGTCCTTCGTTGCAAGCCCTGTCGCAATTCATACGAGACGGAC
GACTTGCCGCAATCTCTGCCCGCCGAGCTTTCGCGTTATGTTCTGCACTC
TTTCGGAGATAAATGTCCACCTTTCCACGTCACCGTGGATGATGTGTCGG
TGCCTGTCGGGCGCCTCGAGGTCGACTACATCTCGGGACATCAACTGGTG
CGGGGCCGTAGCGGCGTCCTCGCTGTCCTGTACCAGACGCATTGGGTAGG
CCTGACTACTCCTTCATAG
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