EsuBft3336_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3336_3a-0001
Unique NameEsuBft3336_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:746214..749648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G496
ProteomeIdEsuBft3336_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length105
Hectar predicted targeting categoryother localisation
Evalue5.35e-36
EggNOG OGs2E19U@1|root,2S8MQ@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3336_3aEsuBft3336_3aEctocarpus subulatus male Bft15bgeneScaffold_499 746214..749648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3336_3a-0001EsuBft3336_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 746239..749234 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3336_3a-0001-exonEsuBft3336_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 746214..746261 -
EsuBft3336_3a-0001-exonagat-exon-73166Ectocarpus subulatus male Bft15bexonScaffold_499 746452..746641 -
EsuBft3336_3a-0001-exonagat-exon-73165Ectocarpus subulatus male Bft15bexonScaffold_499 746917..747153 -
EsuBft3336_3a-0001-exonagat-exon-73164Ectocarpus subulatus male Bft15bexonScaffold_499 747471..747546 -
EsuBft3336_3a-0001-exonagat-exon-73168Ectocarpus subulatus male Bft15bexonScaffold_499 747647..747673 -
EsuBft3336_3a-0001-exonagat-exon-73167Ectocarpus subulatus male Bft15bexonScaffold_499 749173..749648 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3336_3a-0001-exonagat-three_prime_utr-13070Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 746214..746238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3336_3a-0001-cdsEsuBft3336_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 746239..746261 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3336_3a-0001-exonagat-five_prime_utr-8291Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 749235..749648 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3336_3a-0001 ID=EsuBft3336_3a-0001|Name=EsuBft3336_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1054bp|location=Sequence derived from alignment at Scaffold_499:746214..749648- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGGGGGGTGATGTGGAGGACTCCTGTCGGAAGCATAACCAACCAACCAT
TCGTGCACATAGAGAGTAGGAGGATACAATCCATCGGGGTAACTTGCCAT
CTGGAGAGTGACAAGTCACACATCGTTGAGATCCGTCTCTTCAATCGTCT
TTGACCACCTGCCGAGAGCGGAGGCGGAGAATCTTCGACTCTCCTTCCTC
TGCCCTTTGCTGGTCACTCTTTCTACCTCTCTCCTCGTTACATCTCAGGA
AACGAAATAGCCACCCTTGGCAGTAGGGGAACACTGCAACGGCACCGGCT
CCTGTCTCTGACGGTAGCCTGTGTCCTCATACCAGTGAATCTACGATTCA
CATATACCGGCGCAGCAGTGGATTCGTCTTCAACGCGTCCTTGCTCCAAC
AGCCGGGGTATCCAATGGACGGTGCTGTCACGGCACATGTATCTTTTTTT
CGTCATTCGTTGCTGGGGGATGTGAGGGGGGTGGTATCTGGTGTCACGTA
CAGAATCAGCTCCGGTAGCCAAGCGTGGAATTCGATCGCGAAGGCTCCCC
CCTCGCAGAGAGGGGCAGAGGCGACCAAGGAGGCGTCCACCAGCCAAATA
AAAGCGGCGGAACGTCCATGCATAGCAGCACGTAATAGCACTGATTCAGA
TCAGCAGTCCCATCTGGTTAGAGTTCAGGAAGGAGCACATTCACCGTGCT
CTAGCCCACCTGATAGAGAGGATCCACACGACGAGAGCGGTGCCGTAAAA
GGAGGGAACGACAGGGTCCAGCTGTTCCCCGCTACTACCGCGCTTGTGCA
AAACTGCAAAGAAAAGGCCCCCCACTACACGATGGCGCAGCCGGACCGCA
AGGCGCTGGTTGCCCTATACAACGCGACCGGTGGGGCTAAGTGGCGGAAC
AAGCGAAACTGGAACACTCGTGCCGCCCTCTCGCAATGGTACGGAGTCGA
AGTCGACTCCCAGGGCCGCGTGGTGACGTTGCATCTGGGGGGCAACAACC
TCCAAGGCTTTGCGTACAAGGCTCACTGACTGCTGTATTCGTCCAAGCTA
ATCG
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protein sequence of EsuBft3336_3a-0001

>EsuBft3336_3 ID=EsuBft3336_3|Name=EsuBft3336_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=204bp
MDGAVTAHVSFFRHSLLGDVRGVVSGVTYRISSGSQAWNSIAKAPPSQRG
AEATKEASTSQIKAAERPCIAARNSTDSDQQSHLVRVQEGAHSPCSSPPD
REDPHDESGAVKGGNDRVQLFPATTALVQNCKEKAPHYTMAQPDRKALVA
LYNATGGAKWRNKRNWNTRAALSQWYGVEVDSQGRVVTLHLGGNNLQGFA
YKAH
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mRNA from alignment at Scaffold_499:746214..749648-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3336_3a-0001 ID=EsuBft3336_3a-0001|Name=EsuBft3336_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3435bp|location=Sequence derived from alignment at Scaffold_499:746214..749648- (Ectocarpus subulatus male Bft15b)
GGGGGGGGTGATGTGGAGGACTCCTGTCGGAAGCATAACCAACCAACCAT
TCGTGCACATAGAGAGTAGGAGGATACAATCCATCGGGGTAACTTGCCAT
CTGGAGAGTGACAAGTCACACATCGTTGAGATCCGTCTCTTCAATCGTCT
TTGACCACCTGCCGAGAGCGGAGGCGGAGAATCTTCGACTCTCCTTCCTC
TGCCCTTTGCTGGTCACTCTTTCTACCTCTCTCCTCGTTACATCTCAGGA
AACGAAATAGCCACCCTTGGCAGTAGGGGAACACTGCAACGGCACCGGCT
CCTGTCTCTGACGGTAGCCTGTGTCCTCATACCAGTGAATCTACGATTCA
CATATACCGGCGCAGCAGTGGATTCGTCTTCAACGCGTCCTTGCTCCAAC
AGCCGGGGTATCCAATGGACGGTGCTGTCACGGCACATGTATCTTTTTTT
CGTCATTCGTTGCTGGGGGATGTGAGGTATACGACTGTTCCTTCCACACG
AAAAACCCAATCCAGCCCAACCGCCTTCCCCTCACCGTAACCCGACCCTG
GCTCCCGCCTATCCTCCTCGTCAGGCAGTGCCATCTCGGCCAGCTTCGTC
GGGTTTTCCCTCTTCGCCACCCCCCCCTGCCCCCGCCGGCGCCCACATCT
CTCTGCCAGCTTCCTCGAGAGGATAAAAATCCCTCTCGGATGCTTTACTC
TCGGCTCCCGTCTCCTGTGCGAGTTTCCTCCTCGTCATCCGGTGTCGTCT
CTCGGCTTCCACCTCCGGGTATTTTTCTTCGTCTCCCCCATCTCTCCGGG
AGGGCTCTTCGCTGCCAGCTTCGTCAAGAGAGTCAACATTCGTCCGGATG
TGGTCTTCTCTCCCTCCTCGTGTTGTCCCCATGAACGCTGCAGGAAAAGG
TGGACCGCCAGCGCTGCTCGGTCCATGAACCATGCGATGTTTCAGACAAG
GTAGGGATATCGTCGATTACGAAAGTGTCGAAAATGCTTGCGTATTTCAT
CGCCTACTGTGACCATGGGAGGATGTTGTAAGGCGGATGTGCACATCGAT
AGTCTGTTCACTCCGCCGAGTAACATTGATTAACATTGAAAAACCAACCC
GGTGGTGTAGCTACACCAAGGAGTAGGTGGCGTGTCTTCCGATCAGAGCC
AAATCGATGCGAGCCCCTCCACAAGGGAGGGGGAGGGAATTCAATGCCAT
CTCAGCAACAAACAACTCGTATCACACGCGTGGATAAGTACCGGGATCCT
GCACAACACCAACATACAGAACACATTATTATGTCTAGGTTAGGAGATTG
CGCAGGTCGGCGCAAGCGGTGGAGCATGTGATTCTCTGCTGAAAAACCAA
TTGGGAAAGTGGCTGATAGGCCCGGGTGTCAAAGTCGACCGACAGGATAC
AGCAGCCGCAAAACTTTCGTGGTGGATGCACAACGCATTACACCTAGCGT
CTTACATTTTTCTTCCTTCGTCAACTGCCGTACAAGACATGAGCAAGCAA
GGCCAGGACTTACCCTGTTGCTGTGAGTGGGTGGTTAGTAGGGGTGGGTG
TAACGCAGAGTGTCTCCAAAACGTGACGCGCCGCGTTAGTTATTTATGGA
TGTGCCGAAATTCAGCGTACAGAGAGTTCGCCGTTGTAACAACACCACGG
GCCAACCGCTCCACACCAGATCCACTTCGTTCTTAGGTACAATAAGGAAA
CCCGTTCCCTCCGCAGGTCGAGGGCGCGTAACGATTATTGTGGTCGCGTA
GCACCACCTGGTTGTACAACGTGTACCGCTGACCGTTGGTTGCACAAGAT
ATCACACCCCCTTACTAAATTTCAAAGCCCAAATATTCCACGGCAACAAA
AGCGTGATGACGTCGGAAATGGCAACGTTGGAAACGGCTCGTCGAGAGCT
TTGCGAAGCCTTATCGTTTGTTTTATACTCCAGCTTTTCCGTCGTGAAGC
ACTCGAGCTTTGAACACCCATGCAGGGGGGTGGTATCTGGTGTCACGTAC
AGGTACACACATGACAGATGCATATGACACGCCACGCCAAAGCATGTTGG
CGCCACACACGCTCCGAACTGCTGCTGTGCCTACCTTACATCGCTAAAGC
AGAATCAGCTCCGGTAGCCAAGCGTGGAATTCGATCGCGAAGGCTCCCCC
CTCGCAGAGAGGGGCAGAGGCGACCAAGGTGATCTCACAGGCGGACTGTT
TTCGTGCAGCGCGCCGAGCAACGGCGCAACCGCCAAGTTCAACCATGCCG
TGTCTTTTGAAGGCCACACTTGATCACTTGATGGCGAGATATGGCACTTT
CGCCCCAAACCACTGCCAGTGGGTACTCACACACCTGCTCCACCGTGAAC
TGACTTCCATGGTTGGGATTACGTCCGGCCTAGCTGAGCTTTCCGGCTGT
CCGTGATCGTGTTCACCAGGTATTCGGGTGCTGGGTTGTACTGGGGTTGT
CGGCGGTGGGCCGTGACCGATGTTCATGTGCCCCCTGTTTTCAAGGAGGC
GTCCACCAGCCAAATAAAAGCGGCGGAACGTCCATGCATAGCAGCACGTA
ATAGCACTGATTCAGATCAGCAGTCCCATCTGGTTAGAGTTCAGGAAGGA
GCACATTCACCGTGCTCTAGCCCACCTGATAGAGAGGATCCACACGACGA
GAGCGGTGCCGTAAAAGGAGGGAACGACAGGGTCCAGCTGTTCCCCGCTA
CTACCGCGCTTGTGCAAAACTGCAAAGAAAAGGTGGGTATTTTCTGTTCC
TCTCTCCTCTCTTTCATAGACTGGGTTGTTGACCTGGCGGCAAAGTGTGG
CATCGTTCATCATTCGCACATCGCCGAGGTTGTTCGCGCTCGAAGATGTT
GTTGTAGTTCTTTGATGCGATCATCCTCTTGTGATGCTGGTGTGAATGCA
CCACTTCAGTCGCGAAACGACGACCAACAGAAATAAATCGATGGTACTTG
TGCTCTTTCACTAAGTGTTTGTCTTCGCGAACGTCCCGCAACCTTCCGCG
TACCCAGGCCCCCCACTACACGATGGCGCAGCCGGACCGCAAGGCGCTGG
TTGCCCTATACAACGCGACCGGTGGGGCTAAGTGGCGGAACAAGCGAAAC
TGGAACACTCGTGCCGCCCTCTCGCAATGGTACGGAGTCGAAGTCGACTC
CCAGGGCCGCGTGGTGACGTTGCATCTGGGGGGCAACAACCTCCAAGGTA
TTATTCTTCGATTTCTTTCTTGCGATCTCTTTTGACCTTCCCCAAGAACT
CTTTGACCGACAGCCCTTTCATGAAGTCGCAAGTCATACAACATGCCACA
AGGTTGTCTCGTTCGTACGTTCCCGTGTTCTGCACACGGTCTACGCCTCA
GTACCCCTCGTATGTGAATTCCCCGCAGTACCAGCAGGCTTTGCGTACAA
GGCTCACTGACTGCTGTATTCGTCCAAGCTAATCG
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Coding sequence (CDS) from alignment at Scaffold_499:746214..749648-

>EsuBft3336_3a-0001 ID=EsuBft3336_3a-0001|Name=EsuBft3336_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=615bp|location=Sequence derived from alignment at Scaffold_499:746214..749648- (Ectocarpus subulatus male Bft15b)
ATGGACGGTGCTGTCACGGCACATGTATCTTTTTTTCGTCATTCGTTGCT
GGGGGATGTGAGGGGGGTGGTATCTGGTGTCACGTACAGAATCAGCTCCG
GTAGCCAAGCGTGGAATTCGATCGCGAAGGCTCCCCCCTCGCAGAGAGGG
GCAGAGGCGACCAAGGAGGCGTCCACCAGCCAAATAAAAGCGGCGGAACG
TCCATGCATAGCAGCACGTAATAGCACTGATTCAGATCAGCAGTCCCATC
TGGTTAGAGTTCAGGAAGGAGCACATTCACCGTGCTCTAGCCCACCTGAT
AGAGAGGATCCACACGACGAGAGCGGTGCCGTAAAAGGAGGGAACGACAG
GGTCCAGCTGTTCCCCGCTACTACCGCGCTTGTGCAAAACTGCAAAGAAA
AGGCCCCCCACTACACGATGGCGCAGCCGGACCGCAAGGCGCTGGTTGCC
CTATACAACGCGACCGGTGGGGCTAAGTGGCGGAACAAGCGAAACTGGAA
CACTCGTGCCGCCCTCTCGCAATGGTACGGAGTCGAAGTCGACTCCCAGG
GCCGCGTGGTGACGTTGCATCTGGGGGGCAACAACCTCCAAGGCTTTGCG
TACAAGGCTCACTGA
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