EsuBft3317_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3317_4a-0001
Unique NameEsuBft3317_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_390contigScaffold_390:458841..459256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3317_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length21
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3317_4aEsuBft3317_4aEctocarpus subulatus male Bft15bgeneScaffold_390 458841..459256 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3317_4a-0001-exonagat-exon-101948Ectocarpus subulatus male Bft15bexonScaffold_390 458841..458989 +
EsuBft3317_4a-0001-exonEsuBft3317_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_390 459193..459256 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3317_4a-0001-exonagat-five_prime_utr-8258Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_390 458841..458936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3317_4a-0001-cdsEsuBft3317_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_390 458937..458989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3317_4a-0001EsuBft3317_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_390 458937..459256 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3317_4a-0001 ID=EsuBft3317_4a-0001|Name=EsuBft3317_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=213bp|location=Sequence derived from alignment at Scaffold_390:458841..459256+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGAATTCATCCCGTGTCCCATCGTCTCCCAAACGCTCTACCTTCCACCG
GAACACTTTCCTCTGTTTCTTACTCTTGATCTTTCTGGATCGGTCGATGT
TTGCCCATATGAGGAAGTGGTCGGTCGAACCTATATCTATCGCACTTACT
CGCCTGTCCTCTACCGGAAGCTTTCCCTACTCTGGATTNATCGGTCGATG
CTTGCCCATATGA
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protein sequence of EsuBft3317_4a-0001

>EsuBft3317_4 ID=EsuBft3317_4|Name=EsuBft3317_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=38bp
MFAHMRKWSVEPISIALTRLSSTGSFPYSGXIGRCLPI
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mRNA from alignment at Scaffold_390:458841..459256+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3317_4a-0001 ID=EsuBft3317_4a-0001|Name=EsuBft3317_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=416bp|location=Sequence derived from alignment at Scaffold_390:458841..459256+ (Ectocarpus subulatus male Bft15b)
TGGAATTCATCCCGTGTCCCATCGTCTCCCAAACGCTCTACCTTCCACCG
GAACACTTTCCTCTGTTTCTTACTCTTGATCTTTCTGGATCGGTCGATGT
TTGCCCATATGAGGAAGTGGTCGGTCGAACCTATATCTATCGCACTTACG
TGCAGCTCTGGGATCTGCGTGCTCCCCCTATCTACCAGGATGTAGTCGAG
GATTGAGTATTCATTGCAAACTGCCCGTTGCCTTGTGAGTGAACTCCGGC
TTATCGCATTCACTCCTACCGTTCAACACCATCAGTTACTTCCCAAGAAT
TCAAGCATCCTCACTCCGTTGTCATTCACTTTATCTACTCCGTGCTGCCC
AGTCGCCTGTCCTCTACCGGAAGCTTTCCCTACTCTGGATTNATCGGTCG
ATGCTTGCCCATATGA
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Coding sequence (CDS) from alignment at Scaffold_390:458841..459256+

>EsuBft3317_4a-0001 ID=EsuBft3317_4a-0001|Name=EsuBft3317_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=117bp|location=Sequence derived from alignment at Scaffold_390:458841..459256+ (Ectocarpus subulatus male Bft15b)
ATGTTTGCCCATATGAGGAAGTGGTCGGTCGAACCTATATCTATCGCACT
TACTCGCCTGTCCTCTACCGGAAGCTTTCCCTACTCTGGATTNATCGGTC
GATGCTTGCCCATATGA
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