EsuBft330_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft330_4a-0001
Unique Name	EsuBft330_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_370	contig	Scaffold_370:62645..65813 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Status	Manually annotated
ProteomeId	EsuBft330_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	283
Hectar predicted targeting category	other localisation
Description	EsV1-7
Date last modified	2016-11-21
Date creation	2016-06-14
Note	Kleinjan H., annotator

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft330_4a	EsuBft330_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_370 62645..65813 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft330_4a-0001-exon	agat-exon-87266	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 62645..63736 -
EsuBft330_4a-0001-exon	EsuBft330_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 64070..65813 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft330_4a-0001-exon	agat-three_prime_utr-13015	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_370 62645..63590 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft330_4a-0001-cds	EsuBft330_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_370 63591..63736 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft330_4a-0001	EsuBft330_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_370 63591..65813 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_370:62645..65813-
coding sequence from alignment at Scaffold_370:62645..65813-

spliced messenger RNA

>EsuBft330_4a-0001 ID=EsuBft330_4a-0001|Name=EsuBft330_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2836bp|location=Sequence derived from alignment at Scaffold_370:62645..65813- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCATTGCCTCTAGGCCGCTAGACATCGAGGCTTTCCGGCCGCC
GCCGCCTGAAGGAACCACAGCAACGTTAGCCCTTCCGGCCCCTGCCGCGT
CGATGGAAGCGGAAGCAACATCAGCTCCGAGCAGCAGCAGCAGCAGCAGC
GGCGGTAGCGTCACCAACGGCCACCACCAGGAGCCTCCCGGACCGGCCAC
CTCCGGAGGCGTATTTCCTGTACCGCTTCTGCGCCACCTTGCGGAAAGAC
CAGGGACGACCACCGAACACGGCGTCACCACCGGCAAACGATCGCACCAA
ACCGATACTGATGACGATGACGACGACGGCGGCGAGGCAGAACATCTTCC
CAGTAAGCGGGCGGCGCGGGAGCTTCGGGTGCACCATGACGGGGCCGGAG
AAGCTGCTGGGAGCGGGGTTGGGCTCGTCGATCAGGGGGCCGATGGCTCA
GTCTCGCCTGCGGCTGCGGCTCTCGAAGTCGACGGCGCACGCACCGACGC
GTTCATCGATACCGTAGCAGCGGTAGCCGAAGTGGCGAGCAGTGCAACTA
CTGTCGCCCATTTCCCGGGAGATCACGGTCGCCGTCCCTTTCACGCAGCG
CTGGAGCCGTTTTCGGCGCCGATGAACCGCACAGGCGTAGGCACGTTCGA
CCCCGGCGATGGTGCGCGCGGTGTGTGTGAGATTGGCGTAGGAAATAGTG
TTGGGACCAGCGCAGCTTTCCCGCCACCGCTCCCCGACCAGCCAGCGGGC
ATCCCTTTTTCGGTCTTCGCCGGCGGTGCAATCGCGCCGCCGCAGCTTGT
TAGACCTGACCTTGTCGTTGTCGGGCACGATGGCAGGGCATGCGGTCGTG
ATGCCTCTCCATCTGCCGGTTTTGCGGAGGTCGCCGTGCCCCTGGCCCCG
CTGCCGCGGCCGTCGGTAGGCGAGGGCGTCCCGGTCGGCGGGGCTCTGTT
TGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGTCCACCCTTCCGCGC
TACCGCTGCCAGACGAAGCCGGGATCGACGTGGGGACGGAGGCTGCGCTG
CTGTCGAGCCAGCAGCCCCTGCGGTCGGAAGCTCTGTCGGGAGGGGTTCC
TACGGCAGCGTTAGTCGGCGGGGCCCCCGCCGACCACGGCGAAGATGGTC
CTCGGACGATGCCGGCTCCCGGCGACGTCGCGAGCGTTCCGAACTCGCAG
CAGCAGACCCAGAGACAAAAACCGAGACGTACGATGACGACGACGTCGGC
GGCCAGCAGCAGCAGCCGCCGTGCCAAAAAAAAGCGACGCACGTGCGGCA
TGGAGGGCTGCAAGCGGCGGCCGCTCTTCGGCGCCCAGGGCACCCGCAGA
CCGCAGTTCTGCTCGGGCCACAAACCCGCCGGCTTCGTCAACGTGGCCTC
CCGGCGGTGCGAGGCCGACGGGTGCGGGCGACAGCCGTCGTTCGGCGCGC
CGGAGTCCAAGCCGCAGTTCTGCGCGGCCCACCGGTCGGAGGGGATGCTC
AATCTCGCGGCTCCGCGCTGCGTCACCCCCGGGTGCCTGGTGGTCCCGTC
GTTCGCAAGACAGGGCTCGAGGAGGGCGAGCGCTTGCGCCGCCCACCGCA
AGGCCGGGGACGTGGACGTGGTCACTCGCAGATGTCACCAGGAGGGGTGC
GTGCGCCGGCCGGTGTTTGGGTATGGTCCCAGCGGAGGCGGCGGTGTGGT
CGAGCAGAAGAGGGCCCACTACTGCAACGCCCACAAGCTGGAAGGTATGG
TGAACGTCTTCGCCGCTCGCTGCGCGGCGGCCGGCTGCGAGGAAAAAGCC
ACGTTCGGCCCCCCGGGCGTGAAGAAGCCGACCCGATGCGCCAGGCACCG
GACTCCGCAGCACCAAAGGATAACCACTTACCACTCTTGATAATCAATCG
CGCCTCCTCTGCCAAGCGGCAGACCTCCTGTGTCCGTGGACGGAGATGAT
TGGTCGGGGCGGGGTGACCGGTCTGCGGCGGTGCAACCCACCGATGGAGG
GCTTCCGAGGCTTTCAAGGAGCCCGCCGGAGCGTTGCGCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCCCCCCCCCCTCCCCCCCCCGCCCCCCTGGGCGTGC
CGGCAAAAACCCGGCAATATTGCTCCGTCCCTGCGTTGTAGGGATGCGAG
GCCAATGGGCTAACGAATATGGCATGCACGACCATGAGTACAACCCGGCC
CCCCCGGGCGTATTGGGGGTAGCGGGAATTAGGTGACTCTACCATTCGTT
TCGAGCTGCTGTATGCGGGTGAGAAAAAGCGGTTGAAGGTTCTCGGGCCG
GGAGGTGGACGGGTGGGTGGGCAGGCAAGCAATTTGGGGATTGTTATTAT
GCCGCTGATTGCTGCTTTTGGGTTGAGGGGTGGTATTAGACGAAATGCCC
CAACACGTGTGACCCTTTTTCACAACCTTGGGCGTGATAAATATCAGTAA
ACATACATGAACAAGACAGACTATCGCAGGATTTGTTTTCCTCGCCGAGT
GTGTGTAGAGTTTCAGGTTTTGTTTTGACCGTCGGCGTTCTTTGCCGCAC
GGTAGAGATTCGCAGTGGCTATTTGTCGCAGCGACTTTTTGGGGGGCGGG
TGTGGCCGAGGGGGAGCTCTCGCCGATGCCCCGATTGGATAGCACAATAT
GTATGTGGCGGACGGATGAGCAGGAAACGGGGAGTGTCGACATCGTGTCT
TGCTGTCGCAAGCGTGTGAATTCTCCTCGATGTGTC

protein sequence of EsuBft330_4a-0001

>EsuBft330_4 ID=EsuBft330_4|Name=EsuBft330_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=629bp
MGAIASRPLDIEAFRPPPPEGTTATLALPAPAASMEAEATSAPSSSSSSS
GGSVTNGHHQEPPGPATSGGVFPVPLLRHLAERPGTTTEHGVTTGKRSHQ
TDTDDDDDDGGEAEHLPSKRAARELRVHHDGAGEAAGSGVGLVDQGADGS
VSPAAAALEVDGARTDAFIDTVAAVAEVASSATTVAHFPGDHGRRPFHAA
LEPFSAPMNRTGVGTFDPGDGARGVCEIGVGNSVGTSAAFPPPLPDQPAG
IPFSVFAGGAIAPPQLVRPDLVVVGHDGRACGRDASPSAGFAEVAVPLAP
LPRPSVGEGVPVGGALFGGGGGGGGGGGVHPSALPLPDEAGIDVGTEAAL
LSSQQPLRSEALSGGVPTAALVGGAPADHGEDGPRTMPAPGDVASVPNSQ
QQTQRQKPRRTMTTTSAASSSSRRAKKKRRTCGMEGCKRRPLFGAQGTRR
PQFCSGHKPAGFVNVASRRCEADGCGRQPSFGAPESKPQFCAAHRSEGML
NLAAPRCVTPGCLVVPSFARQGSRRASACAAHRKAGDVDVVTRRCHQEGC
VRRPVFGYGPSGGGGVVEQKRAHYCNAHKLEGMVNVFAARCAAAGCEEKA
TFGPPGVKKPTRCARHRTPQHQRITTYHS

mRNA from alignment at Scaffold_370:62645..65813-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft330_4a-0001 ID=EsuBft330_4a-0001|Name=EsuBft330_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3169bp|location=Sequence derived from alignment at Scaffold_370:62645..65813- (Ectocarpus subulatus male Bft15b)
ATGGGCGCCATTGCCTCTAGGCCGCTAGACATCGAGGCTTTCCGGCCGCC
GCCGCCTGAAGGAACCACAGCAACGTTAGCCCTTCCGGCCCCTGCCGCGT
CGATGGAAGCGGAAGCAACATCAGCTCCGAGCAGCAGCAGCAGCAGCAGC
GGCGGTAGCGTCACCAACGGCCACCACCAGGAGCCTCCCGGACCGGCCAC
CTCCGGAGGCGTATTTCCTGTACCGCTTCTGCGCCACCTTGCGGAAAGAC
CAGGGACGACCACCGAACACGGCGTCACCACCGGCAAACGATCGCACCAA
ACCGATACTGATGACGATGACGACGACGGCGGCGAGGCAGAACATCTTCC
CAGTAAGCGGGCGGCGCGGGAGCTTCGGGTGCACCATGACGGGGCCGGAG
AAGCTGCTGGGAGCGGGGTTGGGCTCGTCGATCAGGGGGCCGATGGCTCA
GTCTCGCCTGCGGCTGCGGCTCTCGAAGTCGACGGCGCACGCACCGACGC
GTTCATCGATACCGTAGCAGCGGTAGCCGAAGTGGCGAGCAGTGCAACTA
CTGTCGCCCATTTCCCGGGAGATCACGGTCGCCGTCCCTTTCACGCAGCG
CTGGAGCCGTTTTCGGCGCCGATGAACCGCACAGGCGTAGGCACGTTCGA
CCCCGGCGATGGTGCGCGCGGTGTGTGTGAGATTGGCGTAGGAAATAGTG
TTGGGACCAGCGCAGCTTTCCCGCCACCGCTCCCCGACCAGCCAGCGGGC
ATCCCTTTTTCGGTCTTCGCCGGCGGTGCAATCGCGCCGCCGCAGCTTGT
TAGACCTGACCTTGTCGTTGTCGGGCACGATGGCAGGGCATGCGGTCGTG
ATGCCTCTCCATCTGCCGGTTTTGCGGAGGTCGCCGTGCCCCTGGCCCCG
CTGCCGCGGCCGTCGGTAGGCGAGGGCGTCCCGGTCGGCGGGGCTCTGTT
TGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGTCCACCCTTCCGCGC
TACCGCTGCCAGACGAAGCCGGGATCGACGTGGGGACGGAGGCTGCGCTG
CTGTCGAGCCAGCAGCCCCTGCGGTCGGAAGCTCTGTCGGGAGGGGTTCC
TACGGCAGCGTTAGTCGGCGGGGCCCCCGCCGACCACGGCGAAGATGGTC
CTCGGACGATGCCGGCTCCCGGCGACGTCGCGAGCGTTCCGAACTCGCAG
CAGCAGACCCAGAGACAAAAACCGAGACGTACGATGACGACGACGTCGGC
GGCCAGCAGCAGCAGCCGCCGTGCCAAAAAAAAGCGACGCACGTGCGGCA
TGGAGGGCTGCAAGCGGCGGCCGCTCTTCGGCGCCCAGGGCACCCGCAGA
CCGCAGTTCTGCTCGGGCCACAAACCCGCCGGCTTCGTCAACGTGGCCTC
CCGGCGGTGCGAGGCCGACGGGTGCGGGCGACAGCCGTCGTTCGGCGCGC
CGGAGTCCAAGCCGCAGTTCTGCGCGGCCCACCGGTCGGAGGGGATGCTC
AATCTCGCGGCTCCGCGCTGCGTCACCCCCGGGTGCCTGGTGGTCCCGTC
GTTCGCAAGACAGGGCTCGAGGAGGGCGAGCGCTTGCGCCGCCCACCGCA
AGGCCGGGGACGTGGACGTGGTCACTCGCAGATGTCACCAGGAGGGGTGC
GTGCGCCGGCCGGTGTTTGGGTATGGTCCCAGCGGAGGCGGCGGTGTGGT
CGAGCAGAAGAGGGCCCACTACTGCAACGCCCACAAGCTGGAAGGTGACG
AGGGAACAGCGGCACCCTTGGTGTGTTACCTCAGGCTTGGCTTTTCCCGC
ACGAGCTATACCCGGCGTGTGAGGCGTGCGCGACGGGCTGGAGCTAACGT
AGGCCTAAGAAGGCTACATTTTGATGGCGCTCTTTGCGGCTTTTCTGTGT
GTCCTCATTTCTCTCCCACGACATGAGCTTCAGCGTACGGCTGCACCATT
ACTCAAAGCTATTATTTTTCTGCTGTGTTTTCGGCAGGACACTGCTGCCG
CAACAACAAGCGCACGTTTTTTTTTTTCCACAGCAACATGGCCTCCCCCT
CCCCCCCCAACAACAACAACCCCCCAGGTATGGTGAACGTCTTCGCCGCT
CGCTGCGCGGCGGCCGGCTGCGAGGAAAAAGCCACGTTCGGCCCCCCGGG
CGTGAAGAAGCCGACCCGATGCGCCAGGCACCGGACTCCGCAGCACCAAA
GGATAACCACTTACCACTCTTGATAATCAATCGCGCCTCCTCTGCCAAGC
GGCAGACCTCCTGTGTCCGTGGACGGAGATGATTGGTCGGGGCGGGGTGA
CCGGTCTGCGGCGGTGCAACCCACCGATGGAGGGCTTCCGAGGCTTTCAA
GGAGCCCGCCGGAGCGTTGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCC
CCCCCCCTCCCCCCCCCGCCCCCCTGGGCGTGCCGGCAAAAACCCGGCAA
TATTGCTCCGTCCCTGCGTTGTAGGGATGCGAGGCCAATGGGCTAACGAA
TATGGCATGCACGACCATGAGTACAACCCGGCCCCCCCGGGCGTATTGGG
GGTAGCGGGAATTAGGTGACTCTACCATTCGTTTCGAGCTGCTGTATGCG
GGTGAGAAAAAGCGGTTGAAGGTTCTCGGGCCGGGAGGTGGACGGGTGGG
TGGGCAGGCAAGCAATTTGGGGATTGTTATTATGCCGCTGATTGCTGCTT
TTGGGTTGAGGGGTGGTATTAGACGAAATGCCCCAACACGTGTGACCCTT
TTTCACAACCTTGGGCGTGATAAATATCAGTAAACATACATGAACAAGAC
AGACTATCGCAGGATTTGTTTTCCTCGCCGAGTGTGTGTAGAGTTTCAGG
TTTTGTTTTGACCGTCGGCGTTCTTTGCCGCACGGTAGAGATTCGCAGTG
GCTATTTGTCGCAGCGACTTTTTGGGGGGCGGGTGTGGCCGAGGGGGAGC
TCTCGCCGATGCCCCGATTGGATAGCACAATATGTATGTGGCGGACGGAT
GAGCAGGAAACGGGGAGTGTCGACATCGTGTCTTGCTGTCGCAAGCGTGT
GAATTCTCCTCGATGTGTC

Coding sequence (CDS) from alignment at Scaffold_370:62645..65813-

>EsuBft330_4a-0001 ID=EsuBft330_4a-0001|Name=EsuBft330_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1890bp|location=Sequence derived from alignment at Scaffold_370:62645..65813- (Ectocarpus subulatus male Bft15b)
ATGGGCGCCATTGCCTCTAGGCCGCTAGACATCGAGGCTTTCCGGCCGCC
GCCGCCTGAAGGAACCACAGCAACGTTAGCCCTTCCGGCCCCTGCCGCGT
CGATGGAAGCGGAAGCAACATCAGCTCCGAGCAGCAGCAGCAGCAGCAGC
GGCGGTAGCGTCACCAACGGCCACCACCAGGAGCCTCCCGGACCGGCCAC
CTCCGGAGGCGTATTTCCTGTACCGCTTCTGCGCCACCTTGCGGAAAGAC
CAGGGACGACCACCGAACACGGCGTCACCACCGGCAAACGATCGCACCAA
ACCGATACTGATGACGATGACGACGACGGCGGCGAGGCAGAACATCTTCC
CAGTAAGCGGGCGGCGCGGGAGCTTCGGGTGCACCATGACGGGGCCGGAG
AAGCTGCTGGGAGCGGGGTTGGGCTCGTCGATCAGGGGGCCGATGGCTCA
GTCTCGCCTGCGGCTGCGGCTCTCGAAGTCGACGGCGCACGCACCGACGC
GTTCATCGATACCGTAGCAGCGGTAGCCGAAGTGGCGAGCAGTGCAACTA
CTGTCGCCCATTTCCCGGGAGATCACGGTCGCCGTCCCTTTCACGCAGCG
CTGGAGCCGTTTTCGGCGCCGATGAACCGCACAGGCGTAGGCACGTTCGA
CCCCGGCGATGGTGCGCGCGGTGTGTGTGAGATTGGCGTAGGAAATAGTG
TTGGGACCAGCGCAGCTTTCCCGCCACCGCTCCCCGACCAGCCAGCGGGC
ATCCCTTTTTCGGTCTTCGCCGGCGGTGCAATCGCGCCGCCGCAGCTTGT
TAGACCTGACCTTGTCGTTGTCGGGCACGATGGCAGGGCATGCGGTCGTG
ATGCCTCTCCATCTGCCGGTTTTGCGGAGGTCGCCGTGCCCCTGGCCCCG
CTGCCGCGGCCGTCGGTAGGCGAGGGCGTCCCGGTCGGCGGGGCTCTGTT
TGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGTCCACCCTTCCGCGC
TACCGCTGCCAGACGAAGCCGGGATCGACGTGGGGACGGAGGCTGCGCTG
CTGTCGAGCCAGCAGCCCCTGCGGTCGGAAGCTCTGTCGGGAGGGGTTCC
TACGGCAGCGTTAGTCGGCGGGGCCCCCGCCGACCACGGCGAAGATGGTC
CTCGGACGATGCCGGCTCCCGGCGACGTCGCGAGCGTTCCGAACTCGCAG
CAGCAGACCCAGAGACAAAAACCGAGACGTACGATGACGACGACGTCGGC
GGCCAGCAGCAGCAGCCGCCGTGCCAAAAAAAAGCGACGCACGTGCGGCA
TGGAGGGCTGCAAGCGGCGGCCGCTCTTCGGCGCCCAGGGCACCCGCAGA
CCGCAGTTCTGCTCGGGCCACAAACCCGCCGGCTTCGTCAACGTGGCCTC
CCGGCGGTGCGAGGCCGACGGGTGCGGGCGACAGCCGTCGTTCGGCGCGC
CGGAGTCCAAGCCGCAGTTCTGCGCGGCCCACCGGTCGGAGGGGATGCTC
AATCTCGCGGCTCCGCGCTGCGTCACCCCCGGGTGCCTGGTGGTCCCGTC
GTTCGCAAGACAGGGCTCGAGGAGGGCGAGCGCTTGCGCCGCCCACCGCA
AGGCCGGGGACGTGGACGTGGTCACTCGCAGATGTCACCAGGAGGGGTGC
GTGCGCCGGCCGGTGTTTGGGTATGGTCCCAGCGGAGGCGGCGGTGTGGT
CGAGCAGAAGAGGGCCCACTACTGCAACGCCCACAAGCTGGAAGGTATGG
TGAACGTCTTCGCCGCTCGCTGCGCGGCGGCCGGCTGCGAGGAAAAAGCC
ACGTTCGGCCCCCCGGGCGTGAAGAAGCCGACCCGATGCGCCAGGCACCG
GACTCCGCAGCACCAAAGGATAACCACTTACCACTCTTGA