EsuBft330_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft330_15a-0001
Unique Name	EsuBft330_15a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_370	contig	Scaffold_370:163947..166844 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	164328.Phyra85518
ProteomeId	EsuBft330_15
Protein domains	SSF56672
Protein domains	IPR001584
Protein domains	IPR013103
Protein domains	IPR012337
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	4776\|Peronosporales
Length	2580
Hectar predicted targeting category	other localisation
Evalue	1.65e-96
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QH4V@4776\|Peronosporales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	GAG-pre-integrase domain
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft330_15a	EsuBft330_15a	Ectocarpus subulatus male Bft15b	gene	Scaffold_370 163947..166844 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft330_15a-0001-exon	agat-exon-87348	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 163947..164286 -
EsuBft330_15a-0001-exon	EsuBft330_15a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 164354..164646 -
EsuBft330_15a-0001-exon	agat-exon-87350	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 164689..165882 -
EsuBft330_15a-0001-exon	agat-exon-87349	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 166092..166844 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft330_15a-0001-cds	EsuBft330_15a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_370 163947..164286 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft330_15a-0001	EsuBft330_15	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_370 163947..166844 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_370:163947..166844-
coding sequence from alignment at Scaffold_370:163947..166844-

spliced messenger RNA

>EsuBft330_15a-0001 ID=EsuBft330_15a-0001|Name=EsuBft330_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2580bp|location=Sequence derived from alignment at Scaffold_370:163947..166844- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGAGATCACTCCGCCTGCGAAAGGGGGCTTTCGTTACGTCTCCAA
ATTCACCGACGCCCCCACGCGAATGAAGGAGATCTACTTGCTCAACGCCA
AGTCCGAGTCCGCTCGAGCCCTTTACGCCTACTACATGCACGTGGCTGCT
CCGCTAGGCCGCCGCATCGAGATTATTCGGTGCAACAGAGGAGGGGAAAA
CGTCGGAAGCGAGGTCACCACTTACCGCACCGACTCCGGCATCACCATCG
AATTCACCATCGAATACGCCGCGACGAACACCCCTCAGCAAAATGGCGTA
TCCGAACGAGACGCACAAACTTTGGCGACAATCACGCGTCACCTCATGAA
GGACGGAGTCTTCCCACCTACCCTATGCGGAGAACTAACGCTGACGGTGG
TGTACCTCTCCAACCGGTCGCCCCACACAGCACTTGGGGGAGTAACTCCG
TACTTCAAAATGTACGGCAAAGAAGCGGACCTGTCAAACCTTGGAGTCCT
CGGAGTCACAGCCTTCGTGCACCACGAGCGATACACTAAAACGTTGAGCG
ACCGCGCGTTCGAAGGCAAACTCTGCGGCTTTAGTCAACACAGTAAGGCC
TACAGGATCTACAACACTGCAACCGGCAACGTAGTAGAGAGCAGAAACGT
CACCTTTATTGAGACGCCGGCGTACTCCATGCCTCTCGGCGTGCCCAATG
ACGACCGTTTTTACGAGGGACACGTCCTGCGCTTCACATCCATTCTTGGG
GGGGGTGAAATCGAACAAGGGGATCAGCCGAGACCAGCACAAGGAATATC
GCGGCCGCTTGAAGTGACCTGCGCTGCCACCAGGAAGAGGCCGAACGCCT
CCGACACCGTCGACGCCGCCCTTGCACCCAGCTCTCTGGAGATCAACATG
GACGACAGCGGAGGTGGATGTATGGCGGCCGCCTCGATGCGGTCCGACCC
GAGTGCTCTAACGTTTGGCCAGCTATTGGACATTGCCAGAAGGACCAACC
ACGATCACGCCAGCACGTCTCCGGATTTTGCTCATCTGGATGAAGAATCA
CCCCCGAAGTCGCGGGCCTACGTGTACGCCACAGGCGCCCCGATCCGGCA
AGGATTCTTGGAGGAGGAGCATAGAGCCATCAAAATCCCCAACACCTTCA
AGGAAGCCATCAACTCGCCCGAGACAAAGCAGTGCAAGGTAGCGATCGGA
AAGGAGTTGGACAGTCGGGCGAAACACAGGGTCTTCAAGTTGGTCCCGAT
CACCAGCGTTCCCAAGCACGAGAAGGTTCTCGGCACAAGGTTCGTCTTCA
AACAGAAGGCGGACGAAAGATTCAAGGTCAGGCTGGTGGTTCAAGGCCAT
GTACAAGAATCTGGTATCGACGACGGGAGGCGCTACGCAAGAGTGTGCCG
CATCGGGAGCGTTCGCATCTTTTTCGCCATAGCGTGCGAACGCGGATGGC
CAGTATGGCAGATGGATGTAGCCGTGGCGTTTCTGCAGCCAACGATCGAC
AAGGACGTGTGGGTCAAGCCCGCTCCAGGACAAGACGCAAAGGACCCCGC
GACTGGGGGGATCATGGTCTACAAACTCGAACGCAGCCTCTATGGGCTCG
CGCAGTCGCCAGTCCTCTGGTACGACACCATCGACGAAGTACTAGTGGTG
ATCGGATTCAGGCCCACGCAGTCCGATCCCTGCGTTTACATACACGGAAG
CGGCGACACCCTTGTAATCCTGACGTTATACGTCAACGACATCCTGATCA
GTGGAAAGGATCCCGACCTTGTCGCCGACCTGAAGAAAGAACTCCAAGAC
CGCTTCGAAATAACAGACATTGGAGAAGTTCGTCTCATCCTAGGCATGAA
AGTCACGCGCAGCTACGAAAACGGAACGCTCGTCGTCTCGCAGAAGGGCT
ACGTCAAGAGTATTCTGGAGAGTTTGGGCATGGAGAACTGCAACCCGCCA
GCGGATGAGCTACTCGGAGCAGCCGAGTCCAAGCTATACCAGTCCATCAC
AGGCAGCCTGCTCTACCTGGCTCAATGCAAAAGGTATGACCAGTCCTACG
CGGTCAACCAACTGACGAGGGCATGCAGCAAGCCTGCTCGGGCCCACACG
ACAGCGGCAAAGCACGCGCTTCGATACATTCGCGGAACGCCAGACCTACT
CATCATATTCAAGCGAGGACGATTCCGCGTTGCAGCGTTCGCCGACTCTT
CTTTCGGAGCTATTCCAGACAACAGGAAGTCAACCACAGGTCTACAAGTG
GAGAGCGAACTTCAAGCCATCAGCTACGGAGCAAAGGAGGCCGCATATCT
CTCTAGCCTTCTAATGGCACTCAAGTTCGAAAACTTGAAGCCGATCTCCA
TTTACAGTGACAGCTCAGGGACTCTAAGCCTTGCCGCCAACACCATGTTC
AGCTCGAGGACCAAGCACATCGCGCTGCGGTTCTTCGTTCTCCAGGAATC
GATCAAGCCGCGCCACATCGCGGTTCACCACGTCCCAACGCAGGCTATGC
TTGCTGACATAGCCACGAAGCACTTGGACCGAAACAAGTTCAACTCCATC
ATCCACCAAATCAAGGACTTCGGGGGCTAG

protein sequence of EsuBft330_15a-0001

>EsuBft330_15 ID=EsuBft330_15|Name=EsuBft330_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=859bp
MGEITPPAKGGFRYVSKFTDAPTRMKEIYLLNAKSESARALYAYYMHVAA
PLGRRIEIIRCNRGGENVGSEVTTYRTDSGITIEFTIEYAATNTPQQNGV
SERDAQTLATITRHLMKDGVFPPTLCGELTLTVVYLSNRSPHTALGGVTP
YFKMYGKEADLSNLGVLGVTAFVHHERYTKTLSDRAFEGKLCGFSQHSKA
YRIYNTATGNVVESRNVTFIETPAYSMPLGVPNDDRFYEGHVLRFTSILG
GGEIEQGDQPRPAQGISRPLEVTCAATRKRPNASDTVDAALAPSSLEINM
DDSGGGCMAAASMRSDPSALTFGQLLDIARRTNHDHASTSPDFAHLDEES
PPKSRAYVYATGAPIRQGFLEEEHRAIKIPNTFKEAINSPETKQCKVAIG
KELDSRAKHRVFKLVPITSVPKHEKVLGTRFVFKQKADERFKVRLVVQGH
VQESGIDDGRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTID
KDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVV
IGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQD
RFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNPP
ADELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKPARAHT
TAAKHALRYIRGTPDLLIIFKRGRFRVAAFADSSFGAIPDNRKSTTGLQV
ESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMF
SSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLDRNKFNSI
IHQIKDFGG

mRNA from alignment at Scaffold_370:163947..166844-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft330_15a-0001 ID=EsuBft330_15a-0001|Name=EsuBft330_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2898bp|location=Sequence derived from alignment at Scaffold_370:163947..166844- (Ectocarpus subulatus male Bft15b)
ATGGGGGAGATCACTCCGCCTGCGAAAGGGGGCTTTCGTTACGTCTCCAA
ATTCACCGACGCCCCCACGCGAATGAAGGAGATCTACTTGCTCAACGCCA
AGTCCGAGTCCGCTCGAGCCCTTTACGCCTACTACATGCACGTGGCTGCT
CCGCTAGGCCGCCGCATCGAGATTATTCGGTGCAACAGAGGAGGGGAAAA
CGTCGGAAGCGAGGTCACCACTTACCGCACCGACTCCGGCATCACCATCG
AATTCACCATCGAATACGCCGCGACGAACACCCCTCAGCAAAATGGCGTA
TCCGAACGAGACGCACAAACTTTGGCGACAATCACGCGTCACCTCATGAA
GGACGGAGTCTTCCCACCTACCCTATGCGGAGAACTAACGCTGACGGTGG
TGTACCTCTCCAACCGGTCGCCCCACACAGCACTTGGGGGAGTAACTCCG
TACTTCAAAATGTACGGCAAAGAAGCGGACCTGTCAAACCTTGGAGTCCT
CGGAGTCACAGCCTTCGTGCACCACGAGCGATACACTAAAACGTTGAGCG
ACCGCGCGTTCGAAGGCAAACTCTGCGGCTTTAGTCAACACAGTAAGGCC
TACAGGATCTACAACACTGCAACCGGCAACGTAGTAGAGAGCAGAAACGT
CACCTTTATTGAGACGCCGGCGTACTCCATGCCTCTCGGCGTGCCCAATG
ACGACCGTTTTTACGAGGGACACGTCCTGCGCTTCACATCCATTCTTGGG
GGGGTATCCACTACAGAAGACACTTTCAGTGGATTGGGCGCCACCGTCGA
CTACCAGGCCGAGAATCAACTTCTCCGGCAAGAAATCCGCCAGATGACGT
GATTTGGGAGGAGCTGCAGCAACAATCTACCCACCATGGAAACGACACTG
CACCCAGCCCGCCGAGGTCGCCTCAGGTCATGCCATCCGGAGTCGAGCCG
AACGCCGAATAGGGTGAAATCGAACAAGGGGATCAGCCGAGACCAGCACA
AGGAATATCGCGGCCGCTTGAAGTGACCTGCGCTGCCACCAGGAAGAGGC
CGAACGCCTCCGACACCGTCGACGCCGCCCTTGCACCCAGCTCTCTGGAG
ATCAACATGGACGACAGCGGAGGTGGATGTATGGCGGCCGCCTCGATGCG
GTCCGACCCGAGTGCTCTAACGTTTGGCCAGCTATTGGACATTGCCAGAA
GGACCAACCACGATCACGCCAGCACGTCTCCGGATTTTGCTCATCTGGAT
GAAGAATCACCCCCGAAGTCGCGGGCCTACGTGTACGCCACAGGCGCCCC
GATCCGGCAAGGATTCTTGGAGGAGGAGCATAGAGCCATCAAAATCCCCA
ACACCTTCAAGGAAGCCATCAACTCGCCCGAGACAAAGCAGTGCAAGGTA
GCGATCGGAAAGGAGTTGGACAGTCGGGCGAAACACAGGGTCTTCAAGTT
GGTCCCGATCACCAGCGTTCCCAAGCACGAGAAGGTTCTCGGCACAAGGT
TCGTCTTCAAACAGAAGGCGGACGAAAGATTCAAGGTCAGGCTGGTGGTT
CAAGGCCATGTACAAGAATCTGGTATCGACGACGGGAGGCGCTACGCAAG
AGTGTGCCGCATCGGGAGCGTTCGCATCTTTTTCGCCATAGCGTGCGAAC
GCGGATGGCCAGTATGGCAGATGGATGTAGCCGTGGCGTTTCTGCAGCCA
ACGATCGACAAGGACGTGTGGGTCAAGCCCGCTCCAGGACAAGACGCAAA
GGACCCCGCGACTGGGGGGATCATGGTCTACAAACTCGAACGCAGCCTCT
ATGGGCTCGCGCAGTCGCCAGTCCTCTGGTACGACACCATCGACGAAGTA
CTAGTGGTGATCGGATTCAGGCCCACGCAGTCCGATCCCTGCGTTTACAT
ACACGGAAGCGGCGACACCCTTGTAATCCTGACGTTATACGTCAACGACA
TCCTGATCAGTGGAAAGGATCCCGACCTTGTCGCCGACCTGAAGAAAGAA
CTCCAAGACCGCTTCGAAATAACAGACATTGGAGAAGTTCGTCTCATCCT
AGGCATGAAAGTCACGCGCAGCTACGAAAACGGAACGCTCGTCGTCTCGC
AGAAGGGCTACGTCAAGAGTATTCTGGAGAGTTTGGGCATGGAGAACTGC
AACCCGGTTAGAACTCCGGGATACGGACCGGAACTCTAGACGGATCAGCC
AGCGGATGAGCTACTCGGAGCAGCCGAGTCCAAGCTATACCAGTCCATCA
CAGGCAGCCTGCTCTACCTGGCTCAATGCAAAAGGTATGACCAGTCCTAC
GCGGTCAACCAACTGACGAGGGCATGCAGCAAGCCTGCTCGGGCCCACAC
GACAGCGGCAAAGCACGCGCTTCGATACATTCGCGGAACGCCAGACCTAC
TCATCATATTCAAGCGAGGACGATTCCGCGTTGCAGCGTTCGCCGACTCT
TCTTTCGGAGCTATTCCAGACAACAGGAAGTCAACCACAGGGTACCTGTT
CTTCCTGGGAGGAGGCCTCATCAGCTTCGGAACCAAGGCGCAGTCACTGA
CGGCACAGTCTACAAGTGGAGAGCGAACTTCAAGCCATCAGCTACGGAGC
AAAGGAGGCCGCATATCTCTCTAGCCTTCTAATGGCACTCAAGTTCGAAA
ACTTGAAGCCGATCTCCATTTACAGTGACAGCTCAGGGACTCTAAGCCTT
GCCGCCAACACCATGTTCAGCTCGAGGACCAAGCACATCGCGCTGCGGTT
CTTCGTTCTCCAGGAATCGATCAAGCCGCGCCACATCGCGGTTCACCACG
TCCCAACGCAGGCTATGCTTGCTGACATAGCCACGAAGCACTTGGACCGA
AACAAGTTCAACTCCATCATCCACCAAATCAAGGACTTCGGGGGCTAG

Coding sequence (CDS) from alignment at Scaffold_370:163947..166844-

>EsuBft330_15a-0001 ID=EsuBft330_15a-0001|Name=EsuBft330_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2580bp|location=Sequence derived from alignment at Scaffold_370:163947..166844- (Ectocarpus subulatus male Bft15b)
ATGGGGGAGATCACTCCGCCTGCGAAAGGGGGCTTTCGTTACGTCTCCAA
ATTCACCGACGCCCCCACGCGAATGAAGGAGATCTACTTGCTCAACGCCA
AGTCCGAGTCCGCTCGAGCCCTTTACGCCTACTACATGCACGTGGCTGCT
CCGCTAGGCCGCCGCATCGAGATTATTCGGTGCAACAGAGGAGGGGAAAA
CGTCGGAAGCGAGGTCACCACTTACCGCACCGACTCCGGCATCACCATCG
AATTCACCATCGAATACGCCGCGACGAACACCCCTCAGCAAAATGGCGTA
TCCGAACGAGACGCACAAACTTTGGCGACAATCACGCGTCACCTCATGAA
GGACGGAGTCTTCCCACCTACCCTATGCGGAGAACTAACGCTGACGGTGG
TGTACCTCTCCAACCGGTCGCCCCACACAGCACTTGGGGGAGTAACTCCG
TACTTCAAAATGTACGGCAAAGAAGCGGACCTGTCAAACCTTGGAGTCCT
CGGAGTCACAGCCTTCGTGCACCACGAGCGATACACTAAAACGTTGAGCG
ACCGCGCGTTCGAAGGCAAACTCTGCGGCTTTAGTCAACACAGTAAGGCC
TACAGGATCTACAACACTGCAACCGGCAACGTAGTAGAGAGCAGAAACGT
CACCTTTATTGAGACGCCGGCGTACTCCATGCCTCTCGGCGTGCCCAATG
ACGACCGTTTTTACGAGGGACACGTCCTGCGCTTCACATCCATTCTTGGG
GGGGGTGAAATCGAACAAGGGGATCAGCCGAGACCAGCACAAGGAATATC
GCGGCCGCTTGAAGTGACCTGCGCTGCCACCAGGAAGAGGCCGAACGCCT
CCGACACCGTCGACGCCGCCCTTGCACCCAGCTCTCTGGAGATCAACATG
GACGACAGCGGAGGTGGATGTATGGCGGCCGCCTCGATGCGGTCCGACCC
GAGTGCTCTAACGTTTGGCCAGCTATTGGACATTGCCAGAAGGACCAACC
ACGATCACGCCAGCACGTCTCCGGATTTTGCTCATCTGGATGAAGAATCA
CCCCCGAAGTCGCGGGCCTACGTGTACGCCACAGGCGCCCCGATCCGGCA
AGGATTCTTGGAGGAGGAGCATAGAGCCATCAAAATCCCCAACACCTTCA
AGGAAGCCATCAACTCGCCCGAGACAAAGCAGTGCAAGGTAGCGATCGGA
AAGGAGTTGGACAGTCGGGCGAAACACAGGGTCTTCAAGTTGGTCCCGAT
CACCAGCGTTCCCAAGCACGAGAAGGTTCTCGGCACAAGGTTCGTCTTCA
AACAGAAGGCGGACGAAAGATTCAAGGTCAGGCTGGTGGTTCAAGGCCAT
GTACAAGAATCTGGTATCGACGACGGGAGGCGCTACGCAAGAGTGTGCCG
CATCGGGAGCGTTCGCATCTTTTTCGCCATAGCGTGCGAACGCGGATGGC
CAGTATGGCAGATGGATGTAGCCGTGGCGTTTCTGCAGCCAACGATCGAC
AAGGACGTGTGGGTCAAGCCCGCTCCAGGACAAGACGCAAAGGACCCCGC
GACTGGGGGGATCATGGTCTACAAACTCGAACGCAGCCTCTATGGGCTCG
CGCAGTCGCCAGTCCTCTGGTACGACACCATCGACGAAGTACTAGTGGTG
ATCGGATTCAGGCCCACGCAGTCCGATCCCTGCGTTTACATACACGGAAG
CGGCGACACCCTTGTAATCCTGACGTTATACGTCAACGACATCCTGATCA
GTGGAAAGGATCCCGACCTTGTCGCCGACCTGAAGAAAGAACTCCAAGAC
CGCTTCGAAATAACAGACATTGGAGAAGTTCGTCTCATCCTAGGCATGAA
AGTCACGCGCAGCTACGAAAACGGAACGCTCGTCGTCTCGCAGAAGGGCT
ACGTCAAGAGTATTCTGGAGAGTTTGGGCATGGAGAACTGCAACCCGCCA
GCGGATGAGCTACTCGGAGCAGCCGAGTCCAAGCTATACCAGTCCATCAC
AGGCAGCCTGCTCTACCTGGCTCAATGCAAAAGGTATGACCAGTCCTACG
CGGTCAACCAACTGACGAGGGCATGCAGCAAGCCTGCTCGGGCCCACACG
ACAGCGGCAAAGCACGCGCTTCGATACATTCGCGGAACGCCAGACCTACT
CATCATATTCAAGCGAGGACGATTCCGCGTTGCAGCGTTCGCCGACTCTT
CTTTCGGAGCTATTCCAGACAACAGGAAGTCAACCACAGGTCTACAAGTG
GAGAGCGAACTTCAAGCCATCAGCTACGGAGCAAAGGAGGCCGCATATCT
CTCTAGCCTTCTAATGGCACTCAAGTTCGAAAACTTGAAGCCGATCTCCA
TTTACAGTGACAGCTCAGGGACTCTAAGCCTTGCCGCCAACACCATGTTC
AGCTCGAGGACCAAGCACATCGCGCTGCGGTTCTTCGTTCTCCAGGAATC
GATCAAGCCGCGCCACATCGCGGTTCACCACGTCCCAACGCAGGCTATGC
TTGCTGACATAGCCACGAAGCACTTGGACCGAAACAAGTTCAACTCCATC
ATCCACCAAATCAAGGACTTCGGGGGCTAG