EsuBft330_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft330_11a-0001
Unique NameEsuBft330_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:124387..124933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G8D4
ProteomeIdEsuBft330_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length26
Hectar predicted targeting categoryother localisation
Evalue1.16e-41
EggNOG OGsKOG2512@1|root,KOG2512@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K18272
Descriptionpost-chaperonin tubulin folding pathway
COG categoryQ
BRITEko00000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft330_11aEsuBft330_11aEctocarpus subulatus male Bft15bgeneScaffold_370 124387..124933 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft330_11a-0001-exonagat-exon-87317Ectocarpus subulatus male Bft15bexonScaffold_370 124387..124472 +
EsuBft330_11a-0001-exonagat-exon-87318Ectocarpus subulatus male Bft15bexonScaffold_370 124698..124832 +
EsuBft330_11a-0001-exonEsuBft330_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 124891..124933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft330_11a-0001-cdsEsuBft330_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 124387..124472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft330_11a-0001EsuBft330_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 124387..124933 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft330_11a-0001 ID=EsuBft330_11a-0001|Name=EsuBft330_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=264bp|location=Sequence derived from alignment at Scaffold_370:124387..124933+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGCACCCGACGGCACTGAGTTCACCGATCGCGCCGAGTATCGCAA
GTATCTCTTCCTCACGCAGTACACTTTTAAGGACAGAGAGGGCGAGATCT
TGCGCAAGCTTCCGGGTGACATCGATGGTCAGCCGTTTGACCTCACCTCT
CTCCGCCGCTGCGAGGTAGCGTTGCTGGATCGCTCAGAAGCTGTCCAAGT
GGATGAACTCTCTGATTGCAGCACAAGGGACGGGAACTTGAAAGATGCGA
CAAAAAAAGGTTGA
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protein sequence of EsuBft330_11a-0001

>EsuBft330_11 ID=EsuBft330_11|Name=EsuBft330_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=87bp
MRAPDGTEFTDRAEYRKYLFLTQYTFKDREGEILRKLPGDIDGQPFDLTS
LRRCEVALLDRSEAVQVDELSDCSTRDGNLKDATKKG
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mRNA from alignment at Scaffold_370:124387..124933+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft330_11a-0001 ID=EsuBft330_11a-0001|Name=EsuBft330_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=547bp|location=Sequence derived from alignment at Scaffold_370:124387..124933+ (Ectocarpus subulatus male Bft15b)
ATGAGGGCACCCGACGGCACTGAGTTCACCGATCGCGCCGAGTATCGCAA
GTATCTCTTCCTCACGCAGTACACTTTTAAGGACAGGTGAGTTACTTCCG
GGTGCGTACAAGTATCTTGATCGGCATCCGTTTACCACAACAGCAAGATA
CCCCTGGCCGCCGTACACACACCTCGAGCCTAACCGCCCAAAAGTTGCCT
CGCCACATTGAGTGCAAAAAGGTCGATCGTTCTAACCTCCTTTGTCGTCC
TTGATCTCCCTGTTCGTGCTTGCCACGTGGCTCGGCAAATCTTGTCGACT
CTTGCGTTCAGAGAGGGCGAGATCTTGCGCAAGCTTCCGGGTGACATCGA
TGGTCAGCCGTTTGACCTCACCTCTCTCCGCCGCTGCGAGGTAGCGTTGC
TGGATCGCTCAGAAGCTGTCCAAGTGGATGAACTCTCTGATTGCAGGTAC
GAGTCATGTGCTCTCGAGGTGTACAACTCACCCAATAGACAGCTACAGCA
GCAGCACAAGGGACGGGAACTTGAAAGATGCGACAAAAAAAGGTTGA
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Coding sequence (CDS) from alignment at Scaffold_370:124387..124933+

>EsuBft330_11a-0001 ID=EsuBft330_11a-0001|Name=EsuBft330_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=264bp|location=Sequence derived from alignment at Scaffold_370:124387..124933+ (Ectocarpus subulatus male Bft15b)
ATGAGGGCACCCGACGGCACTGAGTTCACCGATCGCGCCGAGTATCGCAA
GTATCTCTTCCTCACGCAGTACACTTTTAAGGACAGAGAGGGCGAGATCT
TGCGCAAGCTTCCGGGTGACATCGATGGTCAGCCGTTTGACCTCACCTCT
CTCCGCCGCTGCGAGGTAGCGTTGCTGGATCGCTCAGAAGCTGTCCAAGT
GGATGAACTCTCTGATTGCAGCACAAGGGACGGGAACTTGAAAGATGCGA
CAAAAAAAGGTTGA
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