EsuBft330_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft330_10a-0001
Unique NameEsuBft330_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:119032..123970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G8D5
ProteomeIdEsuBft330_10
Protein domainsTMhelix
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSignalP-TM
Protein domainsIPR004480
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR012336
Protein domainsSIGNAL_PEPTIDE
Protein domainsIPR002109
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Notemonothiol glutaredoxin- chloroplastic os:oryza sativa japonica gn:grxs7 pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1743
Hectar predicted targeting categorychloroplast
Evalue4.47e-59
EggNOG OGsCOG0278@1|root,KOG0911@2759|Eukaryota
Ec32 ortholog descriptionMonothiol glutaredoxin-related
Ec32 orthologEc-19_004050.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K07390
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0015291,GO:0015297,GO:0022804,GO:0022857,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085
Descriptionprotein disulfide oxidoreductase activity
COG categoryO
BRITEko00000,ko03029,ko03110
Cross References
External references for this mRNA
DatabaseAccession
GO0051537
GO0031227
GO0046872
GO0055114
GO0006812
GO0055085
GO0009941
GO0045454
GO0015297
GO0009055
GO0009570
GO0015038
GO0015035
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft330_10aEsuBft330_10aEctocarpus subulatus male Bft15bgeneScaffold_370 119032..123970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft330_10a-0001EsuBft330_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 120166..123901 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft330_10a-0001-exonEsuBft330_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 119032..120312 -
EsuBft330_10a-0001-exonagat-exon-87315Ectocarpus subulatus male Bft15bexonScaffold_370 120909..120983 -
EsuBft330_10a-0001-exonagat-exon-87316Ectocarpus subulatus male Bft15bexonScaffold_370 121709..121808 -
EsuBft330_10a-0001-exonagat-exon-87313Ectocarpus subulatus male Bft15bexonScaffold_370 122707..122786 -
EsuBft330_10a-0001-exonagat-exon-87314Ectocarpus subulatus male Bft15bexonScaffold_370 123764..123970 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft330_10a-0001-exonagat-three_prime_utr-13000Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 119032..120165 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft330_10a-0001-cdsEsuBft330_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 120166..120312 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft330_10a-0001-exonagat-five_prime_utr-8245Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_370 123902..123970 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft330_10a-0001 ID=EsuBft330_10a-0001|Name=EsuBft330_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1743bp|location=Sequence derived from alignment at Scaffold_370:119032..123970- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCCACTTGAGTTGACCTCTCTCCCTGCGGGCTGTCTCTCCCCCATCGTC
CCGACCATACAGCACAACAATGAACTTCGCCGTGAACCTCGTGGTGTTGG
CGTTTGCCCTCTTGGCGGGATCGGCGTCCTCGTTTGTTCTCACCCCGAAG
ACAGCCCCGTCGTCTTTGGCATCATCCCCCACATCGTCCGCATCATGCAG
CAAGACGTCCTTGCGAGCATCGATGGACGGGGAGAACCTCCTGCCGAACG
CTGCGGAAATCATGGACGAGATGGCGGGAGAAGCCAAGGACGTTATCGAA
CGCCTTGTCAAGGAGAACAAGGTAATGCTCTTCATGAAGGGCAACAAGAT
GTTTCCGCAGTGCGGCTTCTCCAACAGCGCTGTTCAGGTGCTCCGGGCTT
GCGACGTAGAGTTCGAAACGTACGACGTGCTCACCAACCCTGGGGTGCGC
GAGGCAGTCAAGGAGTACTCCAGCTGGCCGACAATCCCGCAGCTGTACGT
CGACGGAGAGTTCACCGGGGGCGCGGACATCATGATCGAGTCTTTTCAGT
CTGGAGAACTCAAGAAGACCCTCGAAGACGCAGGGTGCACGTTCGTACCA
TCAGAGTAAATTCGATCTTCTGTCTATGATGCGTCGCGTTTCGAAAGTTT
TGAGAGAATATTCATTGCATAGCCCAATTAGTTACTGCAAGACGGCAGTG
GAAACGAATGGAAAATTTGAAGGCGTTCTTTCCAAGCGGTGGGTCAGCAT
ATAAAAAATCGAGATTATGGGGTTTTGGTTCTCCTTGTTTCGCATAAGAC
ACACATGGCGGCAAGAAGTACTTTGTGTAATACCGGGTTGTCCATAAGAA
CGTGTTGAAAAGCATGTAGCGGGCGGGTGGTCATGACGATGATTTGGGTA
TTGCCGGCCCGACGAACTCAATTGTATGATGAGTTGTGTGAAGACGCGCG
AATTTTCGCGTGGTAGCAACGGGGTGCAGAAAAGCTCCACGTTGCGCAAC
AGAGGACTCTCCTGAGGGTTGTTGAAATCAGGTCTGGTGGGCTAACTTTT
CGTCAACCTAAAAACGAGTTACTCCGTTCTACTTACGGGCGTTTATTTTT
TGTGAGGCGTGCTCACCATTGCCAGCGAAGACTTTGGGGGAAGACGAAAA
AGACAGACACCTGGGTGATGCAAATTGCTTCGTGGCCCGTATTAAGCTCT
GAAAGTTTACACCGGCCGTACGCGAGGTTGATACCCGGCCACACGTCGGA
AGTCCAGCCACCGCTGTGGACATTCACCCACAAGGCATGGCACTGGTGGT
CTGGTTGGTTCGAACCCTTCCCCCGTCAATCTTCGCTACTTAGCCGATCG
GTCGGAGAGGATCGAGGGGGCGATCGACCCTGTTGGACGGGGAATAAAGG
ACCGCCAGCACACCGCTCTCGGCGATGATTACATGGCACGAGCTTCCTTG
TGCCGGTCCGGTGAGACCATGGGAGAGGGGGGGGGGTCCAGGCAGCGAAT
GCAAGTTGGCATTGCAGTAAATCTCTCGGCAGATCCGTACGGGCGTCTTG
TTGATGGTGACTGGGCAGGTGCGGAGAGACTGGGGATATGTGCATCACCA
AACCGCCCCCTCGAGAACCAAATGATGCCCAAGAACACCTTCTGTGGTCT
CGAAAAAAGAAAAAAAGTGGGCACGCCGTCAGGAGTCTCCGTGCTAGGCG
AAAACTGGGCAGGAACCCGCAGAGTGTGCGTGCTCCTCGTGCC
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protein sequence of EsuBft330_10a-0001

>EsuBft330_10 ID=EsuBft330_10|Name=EsuBft330_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=179bp
MNFAVNLVVLAFALLAGSASSFVLTPKTAPSSLASSPTSSASCSKTSLRA
SMDGENLLPNAAEIMDEMAGEAKDVIERLVKENKVMLFMKGNKMFPQCGF
SNSAVQVLRACDVEFETYDVLTNPGVREAVKEYSSWPTIPQLYVDGEFTG
GADIMIESFQSGELKKTLEDAGCTFVPSE
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mRNA from alignment at Scaffold_370:119032..123970-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft330_10a-0001 ID=EsuBft330_10a-0001|Name=EsuBft330_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4939bp|location=Sequence derived from alignment at Scaffold_370:119032..123970- (Ectocarpus subulatus male Bft15b)
CGCCACTTGAGTTGACCTCTCTCCCTGCGGGCTGTCTCTCCCCCATCGTC
CCGACCATACAGCACAACAATGAACTTCGCCGTGAACCTCGTGGTGTTGG
CGTTTGCCCTCTTGGCGGGATCGGCGTCCTCGTTTGTTCTCACCCCGAAG
ACAGCCCCGTCGTCTTTGGCATCATCCCCCACATCGTCCGCATCATGCAG
CAAGACGGTGAGCGCACCACCCTCTCTGTCTTAGCCCAGACGGCAGCAGT
AGAGAGACGACACCCAAGATGAGAAAACATCCTGCAGGAGCACATGCCTG
TGTTTCTCGAGCCACCGAAGGTTCCGCGGTGAGCTATTTCATGCGTAGAG
TACATGCACGCGATATGCCCCGCCGTCATGCTCTGCAGGTGTGCGATGTG
GCAGGCACAGACGGGCCTCGAGCCGCAGTGGCAAAAGGGCGTTTTGCCTC
TTCGTGTGAAGCGGGAGTGCCGAACAGAATACCTTGTCGAGAAGGAGGCG
GTAGACAAAAAGGGAAACGATGGAGTTGGGTTGGTCTCATCGCGAACCCC
TTGCGGGTTTGTTTGGCATGCCTGAAGTTGAACGTGTGGAGCAGCTGTGG
TGAACCCGTTCAGGCCCAACCGCAACCTCCACCGCCAACCACAAGATTGG
GCGCGGGAGGGTGGTGCAGGGTTTACGTTACTTTTGGCAAGACGGGTGTC
TTCGATTAACCGATGGAAGGAAGTCTTTAACTACTAGACTATGCATACGT
TCCTTAAAACAAAACAATTTTCGAGCAAGTGTTGAAATCATCGGATGCCA
ATCTCCAGAACTCAGAGTTGTTTCAGAATATGCTACCTCGGGAGAACACA
CAACACATTTCCCCGTGCAGCACCACACAGCAGCAGCCCGCGTGTTACCT
GATTCCGGAACCAATGAGCACCGACCGTGGTTACCAGCAAAGCCGATGAA
CAGACGCCGTCAGTCTTACAGCGGAAAGAAACATGACCACAGCCTTAGTC
ACTCGATTACACAAGAGCAGGAACCGTTGCATTGCCGGACACGGCAAGGT
GGACATGGTGGCGCGTCCTGCGGGTCCGGTTGTAGCGCTGCTTCATTGAC
TTGATTGACTCTTTCGTGACGCGTGCAACCTAATCCGTTGAAGCACGCCG
CCACCTAAGCAATCATCGCCACGCCCTTTGGCAGTCCTTGCGAGCATCGA
TGGACGGGGAGAACCTCCTGCCGAACGCTGCGGAAATCATGGACGAGATG
GCGGGAGAAGCCAAGTGAGTTGTCTGGCGTGCACGAATAGGCCTGCTTTT
TTGCTCTTGGTTAACGTTGCGCTCGTTTCGTCGTATGCCCGACGATAGAG
CTATGCCACACAGCGACCCGGACACAAATGTGATGTGCGCTGAACGAAGA
GGAAAGCCAGCAGTCAGCAGAGGAATAGTTTTTGGGTTGAAGCAAGATAT
GTGGATCAATCCGGCTTGCGAAATTGGCAAATAGATTACCTGCGTCGTCG
ACGTACCATGCTAGCTGTCACAAGAGATAATATAGTGACTGATCAGCTTT
TTAAGTGTAAAGAAACACGGAGCTTCAGATACGTTCGTGGACCAATCGCG
CCGATGGACAAAGTAAGAATCGTCCAGATCTTGCGGGACGTACTTCCGCT
TCTACCGTACAGGTCATGTGGCAGCCGATACGGGTTTCGTTTCTGTGTGG
ATGCCCACATGATACTGTCGAAACTTTCTGAAACCATCCGTAGATGCGGT
TCGCCAAGCCGACGGAGGGAGTTCACACGATCATACTTTTCTGGCTTGGA
CACCTGCGTAGATGACGCTTCGTTGTTCATTTGGTGTTCGCGATGCTTGT
GTTCCCCACCTTAGACTCAAGCATGTGTCATGTCCCGTTTCCCTGACAGC
GCATAAGATATATGACGTGTATACCGTACCGTTCACTCACTGTGTCACAC
CTAGATTATGCCATCACGATGTCGCCTTTAGTGCAGTGTATATCTATTTC
TCATCAAGCACGAGTTACATCCACCCTCGTGAATGCTGGTGGTGGATAGT
GGTCCACCGTCGTGTGCTGGGCAGACAAATTACATGCTCTTTTCCCACGG
CCACACCTCCCGCGCCGCCGCCCGCCCCACCCGCCCGCTCGCACGACGTT
GGACGAGAGCAGGGACGTTATCGAACGCCTTGTCAAGGAGAACAAGGTAA
TGCTCTTCATGAAGGGCAACAAGATGTTTCCGCAGTGCGGCTTCTCCAAC
AGCGCTGTTCAGGTATGTCGTCTTCTTCGGGCTTTCTTGTAGGCGGACGT
GAGGCCGCCACCGCCAGCAATTTGGAAACAGCAATAGCAAAAGCTCTCGT
CAACGCCCGTTGCAGCCACGCTTTCAGTCAGGACCGCGATAGGGAAAAGG
GTTATGGCATCGAGACCGGGCTACTTCTATGTTTCTTCCTTCGGAGCGGG
GGGCAAGTGTTGTGTCTGCTGAGTATCAGCCCGATTTTGCTGTCGAAACC
GCCACCGTCAGTCTCCCGCTCTCTCTTTTTCCTTTCTCTCCCTCCTCGCT
CCCTCTCTCTCTCACGCGTACACACGCACACGCACACACGGAGCATCACG
TTACCTGTCATTGAAACGCGTATATCCATCAAGTGGACATTAATTCGAAA
CCTTCACCTGCCTCGCCCTCCGGGTGTCCATATCCCGCGTGGTTTACCGC
CTCTTCCACCGTGCCCGCTTCGCTGGGATGCGGAGCTCATGGTTGTACAC
TACGCCCGATTGGCATGAAACGAACCCGAGACCCTGAACAGCAAGTGCAC
ATGAATAGTGTGGCAGACTCATGGACATTGAAGTCATCAGAATGTTATCG
GCAGTGTCATGAGATGGAGCGATATTCTGTCTCGCATTGCAGAAGTGAAA
TCCAATCAATGGCCAAGAGGCTGGGGCAAGCAATCGATTGATCCCCCGCG
CGCACACGGCTGTTGTCCACACGCGCACGCACCGCAGGTGCTCCGGGCTT
GCGACGTAGAGTTCGAAACGTACGACGTGCTCACCAACCCTGGGGTGCGC
GAGGCAGTCAAGGTAAGCTCTTGGATGTACGACTGGGAACCAGTGGGATA
CATCCCCCTACGATGCCGTGCTCTCCCTGAAACGTTGAAAACAAGAAGGC
GACCTTTGACGTCTGTAGTGTTTTCGCTTTCGGCCATGTTAAGGTTTCGT
TGCCTGGCGTGTTGCACCCACCACCACCGATGTTTGATTTTCACACCCGG
TACACGTACTGCTTGAATCTCGTGTCGGGAGAAACGGCCGCGCAACTCTT
CACCTAGGAGTTTCAGTGTCGCACCGTCGGAACACCTGGCCCCCCATCAA
CCTCCCCCATGTGTACCTCGTCGTGTTTCCATGTAATTTGTTTCTTTTTT
CTTCATTGCTAATTATTTTCGTGAAATGCAGGAGAAACTCTCGATGTGAG
GACTAGTTCCCACCACTTCATTTGGGAGTTATGCCCTGCTGCTGTTCATG
ATCGCACACCGAAATTCGAGTACCATAGTTACGCGTTTCGTCAGAGCGGG
GTGTGTAGACGTCTTGACTTAGCAGCAATGCCAATTTCGATGTGAAACCC
AGTGTCAATTCTAACAAATACAGCCACCGACACGCATCCACGACTCCGAA
AATCTCAGGAGTACTCCAGCTGGCCGACAATCCCGCAGCTGTACGTCGAC
GGAGAGTTCACCGGGGGCGCGGACATCATGATCGAGTCTTTTCAGTCTGG
AGAACTCAAGAAGACCCTCGAAGACGCAGGGTGCACGTTCGTACCATCAG
AGTAAATTCGATCTTCTGTCTATGATGCGTCGCGTTTCGAAAGTTTTGAG
AGAATATTCATTGCATAGCCCAATTAGTTACTGCAAGACGGCAGTGGAAA
CGAATGGAAAATTTGAAGGCGTTCTTTCCAAGCGGTGGGTCAGCATATAA
AAAATCGAGATTATGGGGTTTTGGTTCTCCTTGTTTCGCATAAGACACAC
ATGGCGGCAAGAAGTACTTTGTGTAATACCGGGTTGTCCATAAGAACGTG
TTGAAAAGCATGTAGCGGGCGGGTGGTCATGACGATGATTTGGGTATTGC
CGGCCCGACGAACTCAATTGTATGATGAGTTGTGTGAAGACGCGCGAATT
TTCGCGTGGTAGCAACGGGGTGCAGAAAAGCTCCACGTTGCGCAACAGAG
GACTCTCCTGAGGGTTGTTGAAATCAGGTCTGGTGGGCTAACTTTTCGTC
AACCTAAAAACGAGTTACTCCGTTCTACTTACGGGCGTTTATTTTTTGTG
AGGCGTGCTCACCATTGCCAGCGAAGACTTTGGGGGAAGACGAAAAAGAC
AGACACCTGGGTGATGCAAATTGCTTCGTGGCCCGTATTAAGCTCTGAAA
GTTTACACCGGCCGTACGCGAGGTTGATACCCGGCCACACGTCGGAAGTC
CAGCCACCGCTGTGGACATTCACCCACAAGGCATGGCACTGGTGGTCTGG
TTGGTTCGAACCCTTCCCCCGTCAATCTTCGCTACTTAGCCGATCGGTCG
GAGAGGATCGAGGGGGCGATCGACCCTGTTGGACGGGGAATAAAGGACCG
CCAGCACACCGCTCTCGGCGATGATTACATGGCACGAGCTTCCTTGTGCC
GGTCCGGTGAGACCATGGGAGAGGGGGGGGGGTCCAGGCAGCGAATGCAA
GTTGGCATTGCAGTAAATCTCTCGGCAGATCCGTACGGGCGTCTTGTTGA
TGGTGACTGGGCAGGTGCGGAGAGACTGGGGATATGTGCATCACCAAACC
GCCCCCTCGAGAACCAAATGATGCCCAAGAACACCTTCTGTGGTCTCGAA
AAAAGAAAAAAAGTGGGCACGCCGTCAGGAGTCTCCGTGCTAGGCGAAAA
CTGGGCAGGAACCCGCAGAGTGTGCGTGCTCCTCGTGCC
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Coding sequence (CDS) from alignment at Scaffold_370:119032..123970-

>EsuBft330_10a-0001 ID=EsuBft330_10a-0001|Name=EsuBft330_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=540bp|location=Sequence derived from alignment at Scaffold_370:119032..123970- (Ectocarpus subulatus male Bft15b)
ATGAACTTCGCCGTGAACCTCGTGGTGTTGGCGTTTGCCCTCTTGGCGGG
ATCGGCGTCCTCGTTTGTTCTCACCCCGAAGACAGCCCCGTCGTCTTTGG
CATCATCCCCCACATCGTCCGCATCATGCAGCAAGACGTCCTTGCGAGCA
TCGATGGACGGGGAGAACCTCCTGCCGAACGCTGCGGAAATCATGGACGA
GATGGCGGGAGAAGCCAAGGACGTTATCGAACGCCTTGTCAAGGAGAACA
AGGTAATGCTCTTCATGAAGGGCAACAAGATGTTTCCGCAGTGCGGCTTC
TCCAACAGCGCTGTTCAGGTGCTCCGGGCTTGCGACGTAGAGTTCGAAAC
GTACGACGTGCTCACCAACCCTGGGGTGCGCGAGGCAGTCAAGGAGTACT
CCAGCTGGCCGACAATCCCGCAGCTGTACGTCGACGGAGAGTTCACCGGG
GGCGCGGACATCATGATCGAGTCTTTTCAGTCTGGAGAACTCAAGAAGAC
CCTCGAAGACGCAGGGTGCACGTTCGTACCATCAGAGTAA
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