Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft329_6 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SignalP-TM |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 176 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft329_6a-0001 ID=EsuBft329_6a-0001|Name=EsuBft329_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1766bp|location=Sequence derived from alignment at Scaffold_604:207091..209345- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAATCAAGGCAAAACCACTGATTTTTCTCTCACCGTACATTCCCGAGC
CGCCTTGCTGCTGGTCGGGTCTAGCACGCTTCATCTCCGCGCCGCCGCCC
CCGCCGCCACCGCCGCCACCCCCGCCCGGGTAGCCTCCCGCGCCCTGGTA
TGGAGCGTTGTCGTACGGCCTCTTGTGCATACCCCCGCCGCCGCTGTGGT
ATGACATGGTTATTTAGTTCCCGAGAGAAGAGAGGCACGAAAGAGTCTCG
TGCTGAAATGAAGGACGGGGTCGTCTGGTCTTCGCGCGAAAAACTTTTTC
CGGATCCGCCAAAGAGAAGGGTTGGATCTGATCGGAAATCTGCTGCTCTG
TCGCTCGTTCTCGCAGCCCTTGTCGAGCCAACGCTCCTAGATCTCTCTCG
CGCGCCTGCGTTGTTGTAGAGAACAGCACCTGGCGTTGCGGGGCGATCGA
ATGTTTTTGTCTATCAGTCTCCGGCGCCTCCAGCTGCCGCCAATTTGAGG
GGCACCCGCGAAATGTTTTTACAGGGGTGTACTTCTCCACTCATGCATTG
ACGGACTCCCTGAGCAGCGCTCGAAGCAGCAGCAGGCACAGTGTTATTTG
GTTTATAATTTTTTTTTTTTTTATTGGTCCTTGCTCCGTCAGTACGAGAC
GCCCACCGCGCGGTTGGTGTCGCAGAAGAGACGATCCGCTAGAAGGTGCA
CTGCTGAAGGGTAGAGGAGAAGAAACGACGCGAATCGGTCCACAAGGCCC
GACGTAACACTGGTCAAGGCGGCTAAACAGGCATAATCGAACCTCGGTAT
ACTGTTGTCACACTCACACTTGAGGTGCTGGTGCAAGTTTTGGGCGTTCG
GTAGCTATCTGTGCTTCAAACCGAAGCTACCTCGCAAGAGGGCCTCAGCA
GGGCTTCAACACGCGGAGCATCTCGGTGCAGTCGGTGCAGCAGCGGCACC
AGGCCCAGGGGAGCTTCGGCGATGCTTCGCATGTGACCGCCCCGGTAGCC
GCGACGGGTGCTCGACCAATTGGCAGCACGTGGTGGACTCCGAATACTGG
GCGGAGCTGGGCGAGTGGTCTGCAACGGTAGGGGAAGGGTGGACTCATGA
GCGCGACCTTGTAGGAGACCCTCTCAAGGCGGGAGAGTGCATCTGTCGCC
GCGCCGACTGTGTGGTTAATTTGTACCAAAGGTACCCGTCGACGGGCTCC
CAGGTGACTCATGCGTCCTGTCATATGCATCGATCTGGGCGAACTCTAGA
ACGTTGAAATTGTAGGAAGACGCGACAACGTTGACCCCCGTGAAAACTTT
CACCCCGTTCTATTTTTTCTGGTCAAGTTATCCTTTCTACGTTCCCACGT
GACTACGTAGATATGTATGTGAGTTTCTGGGATCGCGACCGTCACCATGT
GCTGTTGATGGTGTAGTATTCTACCGAGTGGTGGACGTCCCATCTCTCAA
CCTTGCATCGGTAGCCCTCGCCTTACTCCTTATTTCTCGAGTGGCATTGT
TCCCTTTTCCTTTGTTTTGGTTCTCACATAAGAAAATGGTAAGTAAGAGG
ATGCTGTGGTCGTGCATCGTTGTCTGTCCTGCCCGTGTTGGTCGAAGAGT
CTCGTGGCAGGAGAGAGGGAGTCGACCCCACCCCCACAAGTCAACGGCAA
AAGATATGTAGAGCGCCCGCGAGGAGGGTGGAAACAAACATATTTATGCT
GCCAGCATGCCAGCATACTCCCTCTGCCAGGTAACACCTAACAAAATGAA
GAAATATTAAGTACGA back to topprotein sequence of EsuBft329_6a-0001 >EsuBft329_6 ID=EsuBft329_6|Name=EsuBft329_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=67bp
MNQGKTTDFSLTVHSRAALLLVGSSTLHLRAAAPAATAATPARVASRALV
WSVVVRPLVHTPAAAVV back to topmRNA from alignment at Scaffold_604:207091..209345- Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft329_6a-0001 ID=EsuBft329_6a-0001|Name=EsuBft329_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2255bp|location=Sequence derived from alignment at Scaffold_604:207091..209345- (Ectocarpus subulatus male Bft15b)
ATGAATCAAGGCAAAACCACTGATTTTTCTCTCACCGTACATTCCCGAGC
CGCCTTGCTGCTGGTCGGGTCTAGCACGCTTCATCTCCGCGCCGCCGCCC
CCGCCGCCACCGCCGCCACCCCCGCCCGGGTAGCCTCCCGCGCCCTGGTA
TGGAGCGTTGTCGTACGGCCTCTTGTGCATACCCCCGCCGCCGCTGTGGT
ATGACATGGTTATTTAGTTCCCGAGAGAAGAGAGGCACGAAAGAGTCTCG
TGCTGAAATGAAGGACGGGGTCGTCTGGTCTTCGCGCGAAAAACTTTTTC
CGGATCCGCCAAAGAGAAGGGTTGGATCTGATCGGAAATCTGCTGCTCTG
TCGCTCGTTCTCGCAGCCCTTGTCGAGCCAACGCTCCTAGATCTCTCTCG
CGCGCCTGCGTTGTTGTAGAGAACAGCACCTGGCGTTGCGGGGCGATCGA
ATGTTTTTGTCTATCAGTCTCCGGCGCCTCCAGCTGCCGCCAATTTGAGG
GGCACCCGCGAAATGTTTTTACAGGGGTGTACTTCTCCACTCATGCATTG
ACGGACTCCCTGAGCAGCGCTCGAAGCAGCAGCAGGCACAGTGTTATTTG
GTTTATAATTTTTTTTTTTTTTATTGGTCCTTGCTCCGTCAGTACGAGAC
GCCCACCGCGCGGTTGGTGTCGCAGAAGAGACGATCCGCTAGAAGGTGCA
CTGCTGAAGGGTAGAGGAGAAGAAACGACGCGAATCGGTCCACAAGGCCC
GACGTAACACTGGTCAAGGCGGCTAAACAGGTACGCCGGGCACTCGCAGA
TGGTATCCTGTTTTCTTTTTGACCCCCCCTCAAAAGCCCCCTGGGCAGCA
GGCTGCATGCCACAGCAGGCTGCGTGTTCACAGAGCCGTAGGAGCCTCGT
CGTCGCCAACAGGCATAATCGAACCTCGGTATACTGTTGTCACACTCACA
CTTGAGGTGCTGGTGCAAGTTTTGGGCGTTCGGTAGCTATCTGTGCTTCA
AACCGAAGCTACCTCGCAAGAGGGCCTCAGCAGGGCTTCAACACGCGGAG
CATCTCGGTGCAGTCGGTGCAGCAGCGGCACCAGGCCCAGGTTTGCCTTA
CGAGGAGAATCTTGCGGTCTCAGCGGGTGCGTCGTATAGGTCAGGGTCTG
TACTTGCTCAGGCTGAAACAGCATCGAGGATTACCAATTGTAGACGCCAA
TACCGGCGATTCGGCCAGCAGCTATATACCGCCATTTTCAACGGTTTTTT
CGGTTTTTCCAGGATGGTCCGGCAGCGCCGCGCCTCGTGTGGCAAAGTGG
TGCACGGCAAAGAACCGGCAGCGGCAGGGGAGCTTCGGCGATGCTTCGCA
TGTGACCGCCCCGGTAGCCGCGACGGGTGCTCGACCAATTGGCAGCACGT
GGTGGACTCCGAATACTGGGCGGAGCTGGGCGAGTGGTCTGCAACGGTAG
GGGAAGGGTGGACTCATGAGCGCGACCTTGTAGGAGACCCTCTCAAGGCG
GGAGAGTGCATCTGTCGCCGCGCCGACTGTGTGGTTAATTTGTACCAAAG
GTACAAGGGGAGGCGCCAGAGGGAAGAGAAAGGAGCTTTGCACACCATGG
TGATTGGGCAGCGGTCGCCGATGGGCAGGTACCCGTCGACGGGCTCCCAG
GTATGACACCGCAGAAACACCACCTTTAGTGCGGCGGTGTAGGTGACTCA
TGCGTCCTGTCATATGCATCGATCTGGGCGAACTCTAGAACGTTGAAATT
GTAGGAAGACGCGACAACGTTGACCCCCGTGAAAACTTTCACCCCGTTCT
ATTTTTTCTGGTCAAGTTATCCTTTCTACGTTCCCACGTGACTACGTAGA
TATGTATGTGAGTTTCTGGGATCGCGACCGTCACCATGTGCTGTTGATGG
TGTAGTATTCTACCGAGTGGTGGACGTCCCATCTCTCAACCTTGCATCGG
TAGCCCTCGCCTTACTCCTTATTTCTCGAGTGGCATTGTTCCCTTTTCCT
TTGTTTTGGTTCTCACATAAGAAAATGGTAAGTAAGAGGATGCTGTGGTC
GTGCATCGTTGTCTGTCCTGCCCGTGTTGGTCGAAGAGTCTCGTGGCAGG
AGAGAGGGAGTCGACCCCACCCCCACAAGTCAACGGCAAAAGATATGTAG
AGCGCCCGCGAGGAGGGTGGAAACAAACATATTTATGCTGCCAGCATGCC
AGCATACTCCCTCTGCCAGGTAACACCTAACAAAATGAAGAAATATTAAG
TACGA back to topCoding sequence (CDS) from alignment at Scaffold_604:207091..209345- >EsuBft329_6a-0001 ID=EsuBft329_6a-0001|Name=EsuBft329_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=204bp|location=Sequence derived from alignment at Scaffold_604:207091..209345- (Ectocarpus subulatus male Bft15b)
ATGAATCAAGGCAAAACCACTGATTTTTCTCTCACCGTACATTCCCGAGC
CGCCTTGCTGCTGGTCGGGTCTAGCACGCTTCATCTCCGCGCCGCCGCCC
CCGCCGCCACCGCCGCCACCCCCGCCCGGGTAGCCTCCCGCGCCCTGGTA
TGGAGCGTTGTCGTACGGCCTCTTGTGCATACCCCCGCCGCCGCTGTGGT
ATGA back to top
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