Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 164328.Phyra85763 |
| ProteomeId | EsuBft329_24 |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 4776|Peronosporales |
| Length | 1898 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.82e-69 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | transposition, RNA-mediated |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
| GO | 0097159 |
| GO | 1901363 |
| GO | 0090304 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft329_24a-0001 ID=EsuBft329_24a-0001|Name=EsuBft329_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1898bp|location=Sequence derived from alignment at Scaffold_604:461..2358- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCAGAGAGTACATGTCGATTGCGGAGAGACGTATGCACCGACTGTAGC
GGTTTCTAGCGTTCGCTTGTTGGCAGCGATGGCGTGTGAGCAAAATCTTT
CTCTCCGTCATTTTGACATCAAGCAAGCATTTGTCCAGTCGGATTTGGAT
GAGGATGTTTTCATGCGTCTGCCAGAGGGGTGTGGTAGATTGTCAGGCAT
GATCGTGAAGTTGAACAAGAGTCTGTATGGCCTCAAGCAGGCATCAAGGC
AGTGGCATTCACACTTGGCGAAGTGTTTGATTTGTTTGGGTATTATTCAG
TGCATGGCGGATACGTGTGTGTTTCGGTTGATCGGGGAGGGAAGAGTGGT
AGTGACTCTGGTGGTACATGTAGATGATATATTTTCGATAGGAGAGGAGG
AGAGGTGTGACCAGTTTGGCAGAGACCTCAGGACTATGGTACCTGTGAAG
AATCTTGGGGACTTGAGATGGTACCCTGGATGTTTTTATGAGAGAGATTG
GGATGCAGGGACTTTGAAGATCTCGCAGCAGACGTACGCTGAAGAGTTGG
GGATGGAGTTTGGGGTAGAGTACGGGAAGGAAATTCCTCTTCCTGTAGGG
TTGAAGCTTTCAGAGTTTGACCAGGATGAGGAAGTGGTATCATGGCCTTT
TCGTGAGCTGATAGGATCATTGATGTGGCTGGCAACGCAAACGAGGCCAG
ATATCGCGAATGCAGTAAGAGCGGTAGCACGGTACTGGGCCTCTCCCAAA
GAAATTCATTGGAGAACAGGGCTTGGTATTTTAGGGTATGTGGTACGGAC
TAGTGACTTGGGTATTACATTCAGGAGGGGTAGTGTAGCAGGGTTGAGCA
TGGAGGTGCTTGCAGACGCAGACTATGCAAGTAAGGCTGCCGATAGGAGG
TCTGTGTCAGGGGGATTGGTGATGTGTGGGGGGGGATGTATTCCTTGGTT
TTCAAGGACCCAGAAGTGCGTCACGTTGAGCACGACAGAGGCGGAGTATG
TCTCTTTTGCGGATGTGATGAAGGAAGTGTTGTTTCTGAGGCAGGTGTGG
CGTTTCATGTTACCAGAAGCAGGCATGCCGTGTATTCCGGTGTTCGAGGA
TAACCCGGGGGCTATTCAGTTGGCGCAAAACCCGATAAGCAACAGTAACT
CGAAGCACATTGACGTAAGGCACCACTTTATCAGGGAACTGGTGGACATG
AAGGAGATATCGATTTTTCACGTGGAATCGGCGTATCAACATGCTGACTT
TCTCACGAAAGCACTTCACGCGGGAGATTTTGAGTTTCATCGTAACTACG
TGATGAGTATGGATTAGTATATTGGTGTTTGGATTTATTTTGTGTGTGAT
CAAACTACTGGGGTGGCAACATTTTACATTTTTGCCTATGGTATTTCTCA
ATTGATGATGTTCTAGGCTGGGGGACAACTAGTTCACTGAAGTTCGAAGA
AGTATAACTGGTATGATCGGGGATGGTTATTGATGTCTAGCCAGTGAGGC
TATTGTTCTGGAGTTGAATTGAGTTTCTGATTTTATATTGATTTTCTTGT
GTTTTGGAGCTATTTAGGATCGAAAAAGACATGACATGGTCACAAGCAGG
GGGGCTGATAGATATACTTATAGCAATGCCAAGTGGTTGTAGGATTGTGT
GGTGCGTGGAATGTATTTCCAGGGTGTGCAAGGTACCCCTATTGTATACT
TCGTCGCCCCCTCATGGTGGTGCGTGCACGCGTGCGTTCAGTTCGTGTGA
GTTCATGTGAGTTCATGTGAGTTCATGTGAAGGAGAAGTTTATGCAACAA
ACCCTACACGTCTTTCCTCCTTGGCGCGAGCTCGCCGAGTTGCCGACACC
CTATTCAACACACGTCTTGCGACAAGCTACCCCCAGTTCGGATCATCC back to topprotein sequence of EsuBft329_24a-0001 >EsuBft329_24 ID=EsuBft329_24|Name=EsuBft329_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=438bp
MQRVHVDCGETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLD
EDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLAKCLICLGIIQ
CMADTCVFRLIGEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLRTMVPVK
NLGDLRWYPGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVG
LKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYWASPK
EIHWRTGLGILGYVVRTSDLGITFRRGSVAGLSMEVLADADYASKAADRR
SVSGGLVMCGGGCIPWFSRTQKCVTLSTTEAEYVSFADVMKEVLFLRQVW
RFMLPEAGMPCIPVFEDNPGAIQLAQNPISNSNSKHIDVRHHFIRELVDM
KEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSMD back to topmRNA from alignment at Scaffold_604:461..2358- Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft329_24a-0001 ID=EsuBft329_24a-0001|Name=EsuBft329_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1898bp|location=Sequence derived from alignment at Scaffold_604:461..2358- (Ectocarpus subulatus male Bft15b)
ATGCAGAGAGTACATGTCGATTGCGGAGAGACGTATGCACCGACTGTAGC
GGTTTCTAGCGTTCGCTTGTTGGCAGCGATGGCGTGTGAGCAAAATCTTT
CTCTCCGTCATTTTGACATCAAGCAAGCATTTGTCCAGTCGGATTTGGAT
GAGGATGTTTTCATGCGTCTGCCAGAGGGGTGTGGTAGATTGTCAGGCAT
GATCGTGAAGTTGAACAAGAGTCTGTATGGCCTCAAGCAGGCATCAAGGC
AGTGGCATTCACACTTGGCGAAGTGTTTGATTTGTTTGGGTATTATTCAG
TGCATGGCGGATACGTGTGTGTTTCGGTTGATCGGGGAGGGAAGAGTGGT
AGTGACTCTGGTGGTACATGTAGATGATATATTTTCGATAGGAGAGGAGG
AGAGGTGTGACCAGTTTGGCAGAGACCTCAGGACTATGGTACCTGTGAAG
AATCTTGGGGACTTGAGATGGTACCCTGGATGTTTTTATGAGAGAGATTG
GGATGCAGGGACTTTGAAGATCTCGCAGCAGACGTACGCTGAAGAGTTGG
GGATGGAGTTTGGGGTAGAGTACGGGAAGGAAATTCCTCTTCCTGTAGGG
TTGAAGCTTTCAGAGTTTGACCAGGATGAGGAAGTGGTATCATGGCCTTT
TCGTGAGCTGATAGGATCATTGATGTGGCTGGCAACGCAAACGAGGCCAG
ATATCGCGAATGCAGTAAGAGCGGTAGCACGGTACTGGGCCTCTCCCAAA
GAAATTCATTGGAGAACAGGGCTTGGTATTTTAGGGTATGTGGTACGGAC
TAGTGACTTGGGTATTACATTCAGGAGGGGTAGTGTAGCAGGGTTGAGCA
TGGAGGTGCTTGCAGACGCAGACTATGCAAGTAAGGCTGCCGATAGGAGG
TCTGTGTCAGGGGGATTGGTGATGTGTGGGGGGGGATGTATTCCTTGGTT
TTCAAGGACCCAGAAGTGCGTCACGTTGAGCACGACAGAGGCGGAGTATG
TCTCTTTTGCGGATGTGATGAAGGAAGTGTTGTTTCTGAGGCAGGTGTGG
CGTTTCATGTTACCAGAAGCAGGCATGCCGTGTATTCCGGTGTTCGAGGA
TAACCCGGGGGCTATTCAGTTGGCGCAAAACCCGATAAGCAACAGTAACT
CGAAGCACATTGACGTAAGGCACCACTTTATCAGGGAACTGGTGGACATG
AAGGAGATATCGATTTTTCACGTGGAATCGGCGTATCAACATGCTGACTT
TCTCACGAAAGCACTTCACGCGGGAGATTTTGAGTTTCATCGTAACTACG
TGATGAGTATGGATTAGTATATTGGTGTTTGGATTTATTTTGTGTGTGAT
CAAACTACTGGGGTGGCAACATTTTACATTTTTGCCTATGGTATTTCTCA
ATTGATGATGTTCTAGGCTGGGGGACAACTAGTTCACTGAAGTTCGAAGA
AGTATAACTGGTATGATCGGGGATGGTTATTGATGTCTAGCCAGTGAGGC
TATTGTTCTGGAGTTGAATTGAGTTTCTGATTTTATATTGATTTTCTTGT
GTTTTGGAGCTATTTAGGATCGAAAAAGACATGACATGGTCACAAGCAGG
GGGGCTGATAGATATACTTATAGCAATGCCAAGTGGTTGTAGGATTGTGT
GGTGCGTGGAATGTATTTCCAGGGTGTGCAAGGTACCCCTATTGTATACT
TCGTCGCCCCCTCATGGTGGTGCGTGCACGCGTGCGTTCAGTTCGTGTGA
GTTCATGTGAGTTCATGTGAGTTCATGTGAAGGAGAAGTTTATGCAACAA
ACCCTACACGTCTTTCCTCCTTGGCGCGAGCTCGCCGAGTTGCCGACACC
CTATTCAACACACGTCTTGCGACAAGCTACCCCCAGTTCGGATCATCC back to topCoding sequence (CDS) from alignment at Scaffold_604:461..2358- >EsuBft329_24a-0001 ID=EsuBft329_24a-0001|Name=EsuBft329_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1317bp|location=Sequence derived from alignment at Scaffold_604:461..2358- (Ectocarpus subulatus male Bft15b)
ATGCAGAGAGTACATGTCGATTGCGGAGAGACGTATGCACCGACTGTAGC
GGTTTCTAGCGTTCGCTTGTTGGCAGCGATGGCGTGTGAGCAAAATCTTT
CTCTCCGTCATTTTGACATCAAGCAAGCATTTGTCCAGTCGGATTTGGAT
GAGGATGTTTTCATGCGTCTGCCAGAGGGGTGTGGTAGATTGTCAGGCAT
GATCGTGAAGTTGAACAAGAGTCTGTATGGCCTCAAGCAGGCATCAAGGC
AGTGGCATTCACACTTGGCGAAGTGTTTGATTTGTTTGGGTATTATTCAG
TGCATGGCGGATACGTGTGTGTTTCGGTTGATCGGGGAGGGAAGAGTGGT
AGTGACTCTGGTGGTACATGTAGATGATATATTTTCGATAGGAGAGGAGG
AGAGGTGTGACCAGTTTGGCAGAGACCTCAGGACTATGGTACCTGTGAAG
AATCTTGGGGACTTGAGATGGTACCCTGGATGTTTTTATGAGAGAGATTG
GGATGCAGGGACTTTGAAGATCTCGCAGCAGACGTACGCTGAAGAGTTGG
GGATGGAGTTTGGGGTAGAGTACGGGAAGGAAATTCCTCTTCCTGTAGGG
TTGAAGCTTTCAGAGTTTGACCAGGATGAGGAAGTGGTATCATGGCCTTT
TCGTGAGCTGATAGGATCATTGATGTGGCTGGCAACGCAAACGAGGCCAG
ATATCGCGAATGCAGTAAGAGCGGTAGCACGGTACTGGGCCTCTCCCAAA
GAAATTCATTGGAGAACAGGGCTTGGTATTTTAGGGTATGTGGTACGGAC
TAGTGACTTGGGTATTACATTCAGGAGGGGTAGTGTAGCAGGGTTGAGCA
TGGAGGTGCTTGCAGACGCAGACTATGCAAGTAAGGCTGCCGATAGGAGG
TCTGTGTCAGGGGGATTGGTGATGTGTGGGGGGGGATGTATTCCTTGGTT
TTCAAGGACCCAGAAGTGCGTCACGTTGAGCACGACAGAGGCGGAGTATG
TCTCTTTTGCGGATGTGATGAAGGAAGTGTTGTTTCTGAGGCAGGTGTGG
CGTTTCATGTTACCAGAAGCAGGCATGCCGTGTATTCCGGTGTTCGAGGA
TAACCCGGGGGCTATTCAGTTGGCGCAAAACCCGATAAGCAACAGTAACT
CGAAGCACATTGACGTAAGGCACCACTTTATCAGGGAACTGGTGGACATG
AAGGAGATATCGATTTTTCACGTGGAATCGGCGTATCAACATGCTGACTT
TCTCACGAAAGCACTTCACGCGGGAGATTTTGAGTTTCATCGTAACTACG
TGATGAGTATGGATTAG back to top
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