EsuBft329_22a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft329_22a-0001
Unique NameEsuBft329_22a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_604contigScaffold_604:15597..19504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZI9
ProteomeIdEsuBft329_22
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length164
Hectar predicted targeting categoryother localisation
Evalue4.56e-57
EggNOG OGsKOG1166@1|root,KOG1166@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K02178
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04914,map04110,map04111,map04113,map04114,map04914
EC2.7.11.1
Descriptionmeiotic sister chromatid cohesion, centromeric
COG categoryS
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft329_22aEsuBft329_22aEctocarpus subulatus male Bft15bgeneScaffold_604 15597..19504 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_22a-0001-exonagat-exon-87700Ectocarpus subulatus male Bft15bexonScaffold_604 15597..15788 -
EsuBft329_22a-0001-exonagat-exon-87699Ectocarpus subulatus male Bft15bexonScaffold_604 16568..17902 -
EsuBft329_22a-0001-exonagat-exon-87698Ectocarpus subulatus male Bft15bexonScaffold_604 19186..19296 -
EsuBft329_22a-0001-exonEsuBft329_22a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_604 19502..19504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_22a-0001-cdsEsuBft329_22a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_604 15597..15788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_22a-0001EsuBft329_22Ectocarpus subulatus male Bft15bpolypeptideScaffold_604 15597..19504 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft329_22a-0001 ID=EsuBft329_22a-0001|Name=EsuBft329_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1641bp|location=Sequence derived from alignment at Scaffold_604:15597..19504- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGAGAAGGCCGCGAACGCGGACGAGCGACGGCTTGCGAGGTCCAA
CCAGGAGCTATTGGCCTCTGACCGGGAAGAGAAGGAGGAGGAACATGATG
ATCAGGTGGAAGAGGCCCGCGCAAGATATGTTGCCGAGCAGCAACAAGAA
CCCAATGCCGCCCACACACAAGCCCCCTCCCCCACGGCTGTGGAGATGGA
CATCTGTCCTACCGACTCGGACAATGACGACGACGATGACGGCAGAGGCG
ACGGCGTGAGAGCGGCTTTACGTGCCGGCAAGCTAGCGGAGGAGACGGGT
ATTGCTAGCGGCAGCGGTAGCGGCGGCGGCGGTGCCGGCGGTGGTGGGGT
TGGCGGGAGCGGCTTTAGGCAGCCGGTGTTCGGAGGAGAGGACAACAATA
ACGCCAACGCTGTCGCAGGGTTTAGGAGGCGGTTGTCTCCGTCGCCGCAG
TCGTCGTCGCCGCCGTCGATGCCAGCGGCTGCGGCTGCGGCTGTGGCTGC
GGCGGCAGGGGGTGTCGCTGACGATTTTCCCAGGGACGGCGCCGCTGGGG
GTCGCGTCGATGGGAGCGACGAGCCGGAGCGGGAGGACGACGGCGGCGCC
GGCAGGAGGAGGAAGTTCCGCCAGCCTGTTTTCGACGGTGACGGGGACGA
CAACCACCATCCCGCTGACGCTGCTGGCGCCGCCGCCGCTTTTTCCGCCG
GGTGCTCCGGTCAGTCGGCGGCGGTGGCGACGGCGGCCTTTAGCGGGGAC
AGCAGCGGCGGTGGCGGCGGCGAGAAGATTACCGCGCTGCCGGAGGCGGT
GTCAGACGAGAACGCCGCCCCCGTAGCAGCAGCAGCAGCAGCAGCAGCAG
CGGCACCACCCGCCGCCGCCGGCGCTCGACCGCCACTGGCTGGAGTTCTC
CGGGAGGCCGGTGCTCCCCCCGGCGTTAGCGGCGGTGTCGGCGAAAATGG
AAGGCGTTTCTACGGTGTGGATGGTGATGATGTTCCGAGGGGCAATCCTT
CTGGTCGCGGAAACCTTTCCCCCGATGGCGGCGGCGCCGGCGGGTCGGAG
AACAACGATGGTGTAGTCGGCGGCGGCGGAAGGTACGGAGAGCCTGCTGT
ACCGGCCACTGCTGCTGCTGCTGCTGTTGACGCGGCCGCCGCTGCTGCGG
CGGCGGGAGGAAACCCTAACAACGCCAGCCTGAGCAATGCCTCCGTGATG
TTTGTCAATCCGCGAGAGGCGGAATGCGGAGGAGGAGGAGGGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCGGAAGAGACTGCTGAGGCAAGGGGAGGGC
TGCAGAGGAGGCTAACGTTCGGTCACGCGGGGGGAGCGGCGGCGGCGCCG
TCCGTCAGAGGGGAGGGAAAGCCTGTTGGTGCTGCTGCTGCTGCTGCTGC
TGTTGTCGCTGCCGGTGGGGGTGGTGAAGACACCGCGGAGGAGGCAAAGG
ACGGAGAGGAGGAAGACATGACGATCAACACCAAGCTCGTGTGGGAAGAG
TTTTCGGCGTGGTTCGGCGAAGACGACGAAGAAGACGGGGGAGACGTCGA
TGGCGCGTTCGGGGAGGAGGGGGGGATGCTGCTACAAGAGCAAGGGTCTA
ACAAGCGCTGTGAGTGTGGGACGGTAGAGGCTCCTGTTTAG
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protein sequence of EsuBft329_22a-0001

>EsuBft329_22 ID=EsuBft329_22|Name=EsuBft329_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=546bp
MNEKAANADERRLARSNQELLASDREEKEEEHDDQVEEARARYVAEQQQE
PNAAHTQAPSPTAVEMDICPTDSDNDDDDDGRGDGVRAALRAGKLAEETG
IASGSGSGGGGAGGGGVGGSGFRQPVFGGEDNNNANAVAGFRRRLSPSPQ
SSSPPSMPAAAAAAVAAAAGGVADDFPRDGAAGGRVDGSDEPEREDDGGA
GRRRKFRQPVFDGDGDDNHHPADAAGAAAAFSAGCSGQSAAVATAAFSGD
SSGGGGGEKITALPEAVSDENAAPVAAAAAAAAAAPPAAAGARPPLAGVL
REAGAPPGVSGGVGENGRRFYGVDGDDVPRGNPSGRGNLSPDGGGAGGSE
NNDGVVGGGGRYGEPAVPATAAAAAVDAAAAAAAAGGNPNNASLSNASVM
FVNPREAECGGGGGAAAAAAAAAAEETAEARGGLQRRLTFGHAGGAAAAP
SVRGEGKPVGAAAAAAAVVAAGGGGEDTAEEAKDGEEEDMTINTKLVWEE
FSAWFGEDDEEDGGDVDGAFGEEGGMLLQEQGSNKRCECGTVEAPV
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mRNA from alignment at Scaffold_604:15597..19504-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft329_22a-0001 ID=EsuBft329_22a-0001|Name=EsuBft329_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3908bp|location=Sequence derived from alignment at Scaffold_604:15597..19504- (Ectocarpus subulatus male Bft15b)
ATGGTAGCTCGCGGAATGTACAACGTTTTGAGGGGTATCAACCTTAAGGA
GTTCCCCGACTTAAGGAAACCTGTTGAAACCACAAATCCTGTGCGTCATT
AGCGGACGGACGATTGTATCCACTCCCAGCTTGTATTTTTTTTTTCGGTG
TTGTCGCCGTTGTGTATTTTCTTTTTTTTACATATATATATATATATTTT
ATTTCCAGAACGAGAAGGCCGCGAACGCGGACGAGCGACGGCTTGCGAGG
TCCAACCAGGAGCTATTGGCCTCTGACCGGGAAGAGAAGGAGGAGGAACA
TGATGATCAGGTGGAAGAGGTGAGACAGCGCAGCGGCTGATGGCGGCTTT
GTTGTTACCGAAAATGACACAAGATAACACACCCCCTGGACCGATTTTCA
AAGCTCGATTACTCCACGACGAAGAGGATGCATAAACGAAACGATACATT
TTTGGAAAGCTCTCGACGAGACGGTTCCAACGCCGCCGTTTTCGGCGCTG
TGACTCTTTCTGTTGTTGAGAAATCGAGATTTGAAAATCGGTCCAGGGGG
TGTGTTATCTTGGGTCATTTACGGTATGCGGTGGGTGGTTGTGCTGAAGG
TGGTGTTCGTGTCTGTGGATGGCTGTGTTGTATTTGGGCGGCGATTCATT
GGTCTTTTGCGGTATTTTGAGAGTCGTCGTTTTGTCAGGAGACATGTACA
TGTATTTAGCCCGGGCGCCTGTGTTGGTGATGACTATATTCCTTGATGTC
AATTTGATCACGTTTTTTTTTTTTGCTTTACTTCCTTGTGGTGACGATTT
CTTCTTTTGTGTCGTTTTTTGATGATTCGTTTTTCTTTTCTCGTTTTGGT
GACGTTTCTTTTTTTTCTTTTTTGTCGTTGTGATGACTGAAGGTGGCGTG
GTGCATGTTGTTGGCCGCGCTATTGCTCTGCGACATTTCCATCAGAAGCG
ATATTTTTTCAGGAGACAGCAGACGCTGGTCTGGTTTGCTCCCTTCGAAG
CAGTGGTATTTGTAATGAAGGCACCATGGTGTCATCGTAAGGTTAGGGGA
TATCAACGCCGGTGTGCTCTCTTTGTTGCCATTCATCGCCTTGGCTGCTT
GACCGAACACTGTCTTTTGTCTTTGGAGCGGTGGTACGGCACGGTTGTGT
TTGTATCGTGTAAGCGTAGGTTGTGCGCTTGCTCTCTGTGGTATTGTTGG
TGGCCGTGGCCGCGTGACGGCCGCGTCCACCACACACCGTTCCATTCGTC
CCAAGTGAACTAACTGCCTTCGCGATGATTTTTTTGTCCATCTGTGAATG
CTGTACATGTAGAGGAAGGAGTGTTGTGCCCCTGTCCCGAACCCCCTAAC
CCCTGTTGAAACCAAGCTATCTATCCACGCGAAGGATACTGTCTTCAGTG
GCGTATTTTGATATTTTACTCCTCGACTCCCCCCCCTCTTTGGAGCTTGG
GCGGGCGAAGGCCCGGGACATCGCTCCGTCCCGGCTTTGTAGGCATGCAA
TGTCATATGGTCTAACGAATATAAAACGGCATGCACGACGATGAGTATCC
TCCCACCCCCCCGCCGTCCTTTTACGCGTCACGCCCCGCTGGTTCAAAAT
AGGCCCGCGCAAGATATGTTGCCGAGCAGCAACAAGAACCCAATGCCGCC
CACACACAAGCCCCCTCCCCCACGGCTGTGGAGATGGACATCTGTCCTAC
CGACTCGGACAATGACGACGACGATGACGGCAGAGGCGACGGCGTGAGAG
CGGCTTTACGTGCCGGCAAGCTAGCGGAGGAGACGGGTATTGCTAGCGGC
AGCGGTAGCGGCGGCGGCGGTGCCGGCGGTGGTGGGGTTGGCGGGAGCGG
CTTTAGGCAGCCGGTGTTCGGAGGAGAGGACAACAATAACGCCAACGCTG
TCGCAGGGTTTAGGAGGCGGTTGTCTCCGTCGCCGCAGTCGTCGTCGCCG
CCGTCGATGCCAGCGGCTGCGGCTGCGGCTGTGGCTGCGGCGGCAGGGGG
TGTCGCTGACGATTTTCCCAGGGACGGCGCCGCTGGGGGTCGCGTCGATG
GGAGCGACGAGCCGGAGCGGGAGGACGACGGCGGCGCCGGCAGGAGGAGG
AAGTTCCGCCAGCCTGTTTTCGACGGTGACGGGGACGACAACCACCATCC
CGCTGACGCTGCTGGCGCCGCCGCCGCTTTTTCCGCCGGGTGCTCCGGTC
AGTCGGCGGCGGTGGCGACGGCGGCCTTTAGCGGGGACAGCAGCGGCGGT
GGCGGCGGCGAGAAGATTACCGCGCTGCCGGAGGCGGTGTCAGACGAGAA
CGCCGCCCCCGTAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCACCACCCG
CCGCCGCCGGCGCTCGACCGCCACTGGCTGGAGTTCTCCGGGAGGCCGGT
GCTCCCCCCGGCGTTAGCGGCGGTGTCGGCGAAAATGGAAGGCGTTTCTA
CGGTGTGGATGGTGATGATGTTCCGAGGGGCAATCCTTCTGGTCGCGGAA
ACCTTTCCCCCGATGGCGGCGGCGCCGGCGGGTCGGAGAACAACGATGGT
GTAGTCGGCGGCGGCGGAAGGTACGGAGAGCCTGCTGTACCGGCCACTGC
TGCTGCTGCTGCTGTTGACGCGGCCGCCGCTGCTGCGGCGGCGGGAGGAA
ACCCTAACAACGCCAGCCTGAGCAATGCCTCCGTGATGTTTGTCAATCCG
CGAGAGGCGGAATGCGGAGGAGGAGGAGGGGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGAAGAGACTGCTGAGGCAAGGGGAGGGCTGCAGAGGAGGC
TAACGTTCGGTCACGCGGGGGGAGCGGCGGCGGCGCCGTCCGTCAGAGGG
GAGGGAAAGCCTGTTGGTGCTGCTGCTGCTGCTGCTGCTGTTGTCGCTGC
CGGTGGGGGTGGTGAAGACACCGCGGAGGAGGCAAAGGTTAGCATGTCGT
GTGTTGGAAGACTTGCGTGTTAAGGCGTGTACAATATACGTTTTTTTTGT
CTTGGGCGTTATCACTCTAGTAGCAGTATGCGTATTCGAACTGTTTTTCT
CAAGCGAATGTAGTGTGAGAATAGTTGTGGGTCAGGGAGGCGGGAGATTT
TGTGAAAAAGGCGTAGATAGTACCGTAGGTTGCACGACTCAAGATAACAC
ACCCTCTTTTTTGCCGATGTTCTAAGCTCGACTACGTCGCCCACGAAGAT
GATGATGCCGAAATCAAACGAAACGTTTCGGAAGCATCTCGACGAGACGG
TTCCAACGCCGCCATTTTCGATACCGCCACTGGATTGGATCGAGTCATGA
AGATCGATCCAGGGGGTGTGATATCTTGTGTCATATACGGTATTCATGTC
TGGAAGGTTTCAGTTGGGCCGTCTTGGCGAGAAAATGCGAGTACGGGGAA
ATAGCAGACGCAGGGCGTACGCAGACTCTTCTCCTTATCCCTATCCCGGA
CCCTATCCCAACTTCCCGATTGCCTTCTTTTTTGAACACGTTTGCTTAAT
CGACAAACCTTGCGACTGCTGCTTTTTCAGTCTGGTGGCGGTCGGCCTGC
TTTTTCTCACGCGAAAATATTATTTGGAGGAAGCCACAAACACAACAGAC
AAGCACATCAACAGCTACAACACTGCCACCAGCGGCAACAGCCAATATAC
CACAAAAAACATTACACAATAGAAGCATTTTAAACTAAATCCAGAAACAA
CATTTTTACAACGCAGGACGGAGAGGAGGAAGACATGACGATCAACACCA
AGCTCGTGTGGGAAGAGTTTTCGGCGTGGTTCGGCGAAGACGACGAAGAA
GACGGGGGAGACGTCGATGGCGCGTTCGGGGAGGAGGGGGGGATGCTGCT
ACAAGAGCAAGGGTCTAACAAGCGCTGTGAGTGTGGGACGGTAGAGGCTC
CTGTTTAG
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Coding sequence (CDS) from alignment at Scaffold_604:15597..19504-

>EsuBft329_22a-0001 ID=EsuBft329_22a-0001|Name=EsuBft329_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1641bp|location=Sequence derived from alignment at Scaffold_604:15597..19504- (Ectocarpus subulatus male Bft15b)
ATGAACGAGAAGGCCGCGAACGCGGACGAGCGACGGCTTGCGAGGTCCAA
CCAGGAGCTATTGGCCTCTGACCGGGAAGAGAAGGAGGAGGAACATGATG
ATCAGGTGGAAGAGGCCCGCGCAAGATATGTTGCCGAGCAGCAACAAGAA
CCCAATGCCGCCCACACACAAGCCCCCTCCCCCACGGCTGTGGAGATGGA
CATCTGTCCTACCGACTCGGACAATGACGACGACGATGACGGCAGAGGCG
ACGGCGTGAGAGCGGCTTTACGTGCCGGCAAGCTAGCGGAGGAGACGGGT
ATTGCTAGCGGCAGCGGTAGCGGCGGCGGCGGTGCCGGCGGTGGTGGGGT
TGGCGGGAGCGGCTTTAGGCAGCCGGTGTTCGGAGGAGAGGACAACAATA
ACGCCAACGCTGTCGCAGGGTTTAGGAGGCGGTTGTCTCCGTCGCCGCAG
TCGTCGTCGCCGCCGTCGATGCCAGCGGCTGCGGCTGCGGCTGTGGCTGC
GGCGGCAGGGGGTGTCGCTGACGATTTTCCCAGGGACGGCGCCGCTGGGG
GTCGCGTCGATGGGAGCGACGAGCCGGAGCGGGAGGACGACGGCGGCGCC
GGCAGGAGGAGGAAGTTCCGCCAGCCTGTTTTCGACGGTGACGGGGACGA
CAACCACCATCCCGCTGACGCTGCTGGCGCCGCCGCCGCTTTTTCCGCCG
GGTGCTCCGGTCAGTCGGCGGCGGTGGCGACGGCGGCCTTTAGCGGGGAC
AGCAGCGGCGGTGGCGGCGGCGAGAAGATTACCGCGCTGCCGGAGGCGGT
GTCAGACGAGAACGCCGCCCCCGTAGCAGCAGCAGCAGCAGCAGCAGCAG
CGGCACCACCCGCCGCCGCCGGCGCTCGACCGCCACTGGCTGGAGTTCTC
CGGGAGGCCGGTGCTCCCCCCGGCGTTAGCGGCGGTGTCGGCGAAAATGG
AAGGCGTTTCTACGGTGTGGATGGTGATGATGTTCCGAGGGGCAATCCTT
CTGGTCGCGGAAACCTTTCCCCCGATGGCGGCGGCGCCGGCGGGTCGGAG
AACAACGATGGTGTAGTCGGCGGCGGCGGAAGGTACGGAGAGCCTGCTGT
ACCGGCCACTGCTGCTGCTGCTGCTGTTGACGCGGCCGCCGCTGCTGCGG
CGGCGGGAGGAAACCCTAACAACGCCAGCCTGAGCAATGCCTCCGTGATG
TTTGTCAATCCGCGAGAGGCGGAATGCGGAGGAGGAGGAGGGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCGGAAGAGACTGCTGAGGCAAGGGGAGGGC
TGCAGAGGAGGCTAACGTTCGGTCACGCGGGGGGAGCGGCGGCGGCGCCG
TCCGTCAGAGGGGAGGGAAAGCCTGTTGGTGCTGCTGCTGCTGCTGCTGC
TGTTGTCGCTGCCGGTGGGGGTGGTGAAGACACCGCGGAGGAGGCAAAGG
ACGGAGAGGAGGAAGACATGACGATCAACACCAAGCTCGTGTGGGAAGAG
TTTTCGGCGTGGTTCGGCGAAGACGACGAAGAAGACGGGGGAGACGTCGA
TGGCGCGTTCGGGGAGGAGGGGGGGATGCTGCTACAAGAGCAAGGGTCTA
ACAAGCGCTGTGAGTGTGGGACGGTAGAGGCTCCTGTTTAG
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