EsuBft329_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft329_12a-0001
Unique NameEsuBft329_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_604contigScaffold_604:164859..165273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft329_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length41
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft329_12aEsuBft329_12aEctocarpus subulatus male Bft15bgeneScaffold_604 164859..165273 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_12a-0001-exonEsuBft329_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_604 164859..165273 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_12a-0001-exonagat-three_prime_utr-12898Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 164859..165086 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_12a-0001-cdsEsuBft329_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_604 165087..165242 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_12a-0001-exonagat-five_prime_utr-8178Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_604 165243..165273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft329_12a-0001EsuBft329_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_604 165087..165242 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft329_12a-0001 ID=EsuBft329_12a-0001|Name=EsuBft329_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=415bp|location=Sequence derived from alignment at Scaffold_604:164859..165273- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCGGGCCTCCAGGCCGTCGGTGTAGGCAGCAATGCCCATCTCGTCTTTGT
GCGCGGAGGCAGACGTCATCAGAAAGGTGGACGGGCACTATGTACACGGC
CCTAGGTTCGCTAGAGGGAGCTGTACTGTCTCAGTAACCTTGTTTTGCCA
TCAAAGGAGGAGGGGACGACAGGTGGTGAAGAGCTGATTGGGCTGGTTGA
CCCTTCGGCGCGAAAATTTCCAGACCAACAACCCTAAGTGCAACGAGGGA
GAAAGCGAGGAACCGACTGGGAAGGACAGCAACGAGAGCGTGTACGAAGC
GAAGCGGGTCGAGTTTGGTCGTGCTAGGACTGGCGACAGCGGCACCGGAG
CGGCGGCACCGGAGCAGCGGAACCGGAGCATGCGGACGGCATCGAACCGT
GGTGCACGGACAAAC
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protein sequence of EsuBft329_12a-0001

>EsuBft329_12 ID=EsuBft329_12|Name=EsuBft329_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=51bp
MPISSLCAEADVIRKVDGHYVHGPRFARGSCTVSVTLFCHQRRRGRQVVK
S
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mRNA from alignment at Scaffold_604:164859..165273-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft329_12a-0001 ID=EsuBft329_12a-0001|Name=EsuBft329_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=415bp|location=Sequence derived from alignment at Scaffold_604:164859..165273- (Ectocarpus subulatus male Bft15b)
GCGGGCCTCCAGGCCGTCGGTGTAGGCAGCAATGCCCATCTCGTCTTTGT
GCGCGGAGGCAGACGTCATCAGAAAGGTGGACGGGCACTATGTACACGGC
CCTAGGTTCGCTAGAGGGAGCTGTACTGTCTCAGTAACCTTGTTTTGCCA
TCAAAGGAGGAGGGGACGACAGGTGGTGAAGAGCTGATTGGGCTGGTTGA
CCCTTCGGCGCGAAAATTTCCAGACCAACAACCCTAAGTGCAACGAGGGA
GAAAGCGAGGAACCGACTGGGAAGGACAGCAACGAGAGCGTGTACGAAGC
GAAGCGGGTCGAGTTTGGTCGTGCTAGGACTGGCGACAGCGGCACCGGAG
CGGCGGCACCGGAGCAGCGGAACCGGAGCATGCGGACGGCATCGAACCGT
GGTGCACGGACAAAC
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Coding sequence (CDS) from alignment at Scaffold_604:164859..165273-

>EsuBft329_12a-0001 ID=EsuBft329_12a-0001|Name=EsuBft329_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=156bp|location=Sequence derived from alignment at Scaffold_604:164859..165273- (Ectocarpus subulatus male Bft15b)
ATGCCCATCTCGTCTTTGTGCGCGGAGGCAGACGTCATCAGAAAGGTGGA
CGGGCACTATGTACACGGCCCTAGGTTCGCTAGAGGGAGCTGTACTGTCT
CAGTAACCTTGTTTTGCCATCAAAGGAGGAGGGGACGACAGGTGGTGAAG
AGCTGA
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