Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft329_11 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 177 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft329_11a-0001 ID=EsuBft329_11a-0001|Name=EsuBft329_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1775bp|location=Sequence derived from alignment at Scaffold_604:167084..171801+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TCTCTCACACAGTCACATCTCACGCACACACGTCCTCGTCCCCTTCCCTG
ACAAACACCTCGCGACCACTGCTGCTGCAAGACACCTTCTCCTCCAAGAC
TCCGCGACACCAACTACCCACCACCTGCCTTCGCGAGCTTCCGATCGAGA
CGAACGAACACCACCACCACACACAGCGACGAGTTCGTACAAACAACCAG
AGGCTTCGTCCCAATCACAACGATCAACAACGACAACAACAGAGCCATGA
CTTCCGTCCACAAGCCCGACCTCTCCGGCCTGCCCGCCTTCAACGTCGCT
GGCGGTCGCCCCGACGAGCGCTTCGGTACCAGGGGCTCCTTCACCCGCGG
CGTGCACATCATGTCCGGTGGCCATGCTCGCGATGTACCGCTCGAGGCCG
AGGTCGACCACGGCAAGGTGCTCTTCGTGTCCGCCGTCCACAAGCCGGAT
CTCTCCGCCGAGGCCCGCACCAACGCCGTCCGCCCGACGGAGCGCCTCGG
CTCCCGGGGCCGCTTCACCGCGGGCGTCCGTCGCTGGGCCGGTGGCGAGC
CTCGTGACGTGCCGCTCCCGCGCGTGTGCGACCCGGGTACCGTCCTGTTC
GAGTCCGCCTCGGAACGTAGCAGGCCCTCCTTGTCCTTTTCGCGCGAGAC
CAACGTGTCCGGAGGCAGGCAGGACGAGCGCCACGGGCGGCTGGGATCGT
TCGAGCACGGGGTCGTCGAGGCTCGGGGAGGGCCGCTGCAGGTTCAGGCG
GCCTTCGCGCGCGATGTGGAGCAGCTGTGGCACGAGGGCGGGCAGAAGGA
GAACAAGTACCGCCGCTGCGGGCCCAGCCACTTCGTCGCCGGCGTGTCTA
TTCTGTCGGGCGGCATGCCGGTCTACTGAGAGTAGAGAATGACTGCTGTT
GCTACTGTAAGGAGAGTATGAGGCGCTTGTCATGCTGTCCGCCTCATGCG
TGGTTGGTCATTCACCAAAGGTTGCTCATTGTTGGCAGCGTGTTAGCGTG
TTTGGTCTTCCACCGGCACCAGCGCGAACTTACCGTTGATTTCTTTTTTG
AGAGAGGGGGCAATGTTGAGAAGGTTGCTATCCTTTCGGGTCGTTTTACA
TCGATGGGTGCCTGTGGTGTGCTACATGTTGAGAGCACCACGCAGCGGCG
GCGGGGACCAAGATGGTCGGCTTGAATAAACGTTGTTCATGACTTGTTCG
TGACGAGTGTTGGAGGAGTCGAACAAGTTAAGAAGTTCGTGGTGTTGTAG
TTGATAGAATAGGATGATTAGAAGTGATGACCTGTGTTGGACATGATGCT
ATGTGAAGTGGTTGTTGTCTCAAGGGGGGCGAAAGCGGTAGTTGTTCGTC
CGTGTACACCCTCCCCGCCCCATCGACCCCCGGCAAGGGATCCAGTACTG
AATTGGGGTACAAGAGATTCTCGGCTAGTGTCATTGTCGCCGCTAAGGTT
TCGTGTGGTATTCGTCTCGGTGTCTGTTTTTTCAATAATGGATGGGGGTA
CGGTGGTGGGTGTTGACGTGACGTGCATGGCGTTACTTGAAGGATATTTT
TTCATTCCGATCGACATATTAGTCCGAGAACGATGAATATAGAAAGGTGT
GTACTAGTAGACTCTACTGCTGCTGTAGTTTAGTTGTGCCTCTTTGCTGT
TGTTTTGCGAGGGGGTGCTCTAGCGGGGGGGACGCCATGACGCGCACATG
ATTAAAGGAGAGCGGGAGATACGTAGAAATATCCAGGAATTGAATGGGTT
TGGCGTGAGCGGGTAGAAAATCGAA back to topprotein sequence of EsuBft329_11a-0001 >EsuBft329_11 ID=EsuBft329_11|Name=EsuBft329_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=210bp
MTSVHKPDLSGLPAFNVAGGRPDERFGTRGSFTRGVHIMSGGHARDVPLE
AEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGSRGRFTAGVRRWAGG
EPRDVPLPRVCDPGTVLFESASERSRPSLSFSRETNVSGGRQDERHGRLG
SFEHGVVEARGGPLQVQAAFARDVEQLWHEGGQKENKYRRCGPSHFVAGV
SILSGGMPVY back to topmRNA from alignment at Scaffold_604:167084..171801+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft329_11a-0001 ID=EsuBft329_11a-0001|Name=EsuBft329_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4718bp|location=Sequence derived from alignment at Scaffold_604:167084..171801+ (Ectocarpus subulatus male Bft15b)
TCTCTCACACAGTCACATCTCACGCACACACGTCCTCGTCCCCTTCCCTG
ACAAACACCTCGCGACCACTGCTGCTGCAAGACACCTTCTCCTCCAAGAC
TCCGCGACACCAACTACCCACCACCTGCCTTCGCGAGCTTCCGATCGAGA
CGAACGAACACCACCACCACACACAGCGACGAGTTCGTACAAACAACCAG
AGGTGAGAGCGGTTGTTGTGAAGGACCTTCTCGTAGCCTCTCTCCGTTTG
CCGCCGTGGCACAGTAATTGCGGCGACGAGCGTGGCGAACCAGGGGCCGA
CATCACGGCAGTATACTTATCAATACCGCAATGTACGGTAGCACGGCCTG
CCCGCTCCGATTGTTTCAAGCGGGCTAAAGATATGATGGGGGGTGACATC
CGACGGCGGTTGTTCGACTCTCCGCTCCGCGGTAGAGAACATCGTGTGTC
ACATCTATCACCCATTTTCTTGTGGTCGAGGAGAAACAGGCGAGCTGCCG
TGCTCTATCTCCCACACAGGACCCGCCCGATCCAGTGTTCGTGGGCGCTC
TTAAGATCGAGTATGTGTAATGTACAGAATGATCAGACCACGAGAGCTCG
GTGCAATTTACAGCGTCGATCAGGTAGTAGGTGACTCAGTGGTCTGTCTT
GAACATTCAACCATTAAACCTCCAATCCGGCTCTTTTTTGTTCTCGAAGA
GTCCCAGGCGGAGAAACACAGATACATCTGTGATGTTCCCGACTCATGCT
TGGCCCACCACACTGCTATACCGTATAGAGGCGCCGCGCTCCCAGATTTG
CCATGAACAAAAGAGTAAAGGGCATAACGCGGCGGCCGTGCTTGTTGTGT
GCTCCCTATTTGCTCCTCGTCGTGTAGTCTAGCTAAATACATCACGACAT
TATTTTCTGTTGTACTTTCGTTTCCGGCCGTGTGGCGATGGTATAGACTT
ACTTCGTAATATTTAGGTAGTCCGGCCCTGTCTCTCATGTTTTTCCCTCA
CCTAGTTAGCCGTCGATATGGGATACGGTGAAAAGCGAAAAGATGTCACC
GGGTGCGGTCGTTTTCTTATACCACGGTACATACTTCTAGTACATCCGTT
TTTTCCTCTTTATGTTTGGACGCCGATGGTGTCATCTCTCCGACACCGGT
CGGTGCGGGAATGCAATTCGAAAACACTTAGATTCGCTTTTCCAAGGCAC
ACCGGTGCGATTTCTCCGACCGGTGCGATGCGCAACGAAATACACACAGC
GGGCCTGCTGGTGCTCGGCGGGTGTTGTATGCACGCACCATCTTCCCGAC
CCGTGCCATCTCTCCGTCTCCTCTCAGTACCAGTACTACGGCGTATCTAT
CTACAAGCAGATGTGCGCGGAGTAGGCACCGTTGTTGCTGGCCGTGAGCA
CACCGGCAAACGGCAACGTAGGCTGGAACCTACGACGTAGCGTTTTACCA
CGCAGTGAGTGGTCATGGCTTGAATGCGAGTTCGACAACGGCGTGCCAAG
GGCAACAAACGAATGGTTGTGGTTTTATCTGGAGTACACAGTACTGGTAC
ATACGGCAGCCGGTTCTCTCCCGCATCCGTTTCGGTGTTCCTCTACGCGC
AGCAGCTCATTTGAAATTAATGTGTTGCTGTGGGTGAAGGGAGCGGCTTG
TATGTGGTGTGCGTGGCTAACTGAGTGTACGGTTGGCAACTTCCATACGA
AGCAACAACAACAAATGACAATCTGCGTGAACCGCGACCGATTGTACATA
CATACATGTAGAAGTGGCGCTCCGATGACACCGTCCGCACACTTGCAAAA
GGTGATCCCACATGTACCTCGTTTCAGCAGCTCAAGAAGAGCTCAATCTT
GGGTTTGGGGGTCGGCAAAATCGCACACGGTGCGATCGGTGCGGAATCGA
AATATATCATGCCGTTCTTGATTTTCTCTGCGAACTCTGGTGCCATCTCC
ACGGTTTGAGCCATCTCTCCGCCTTCTACGGTAGTTCCACCACACCATAC
CATGCATGCTCAGCTCCGCACTCCTTGAGGAAGAAGTCACACTGCCTACT
ACTGTAGTGTTGTTGCACCAGCTTTGAATTGTGATCTTCCTCTAGCCCCC
TTGTGCTTACATTGTGTCAAGTATTTCCAACGTTTGCACGGCAATTGTTC
TGAATATGGACACAATAGTGCGCACGCTCACTTACCCTCCCGTCTGGCGT
TCGTCGTTCCGTCATCACAACTGAAAATTGCGTGAACGTTTTACAGCGGG
AACAAAATACAGTGTAGACTATGCGATTCTCGACGTCACGTCGCACTATG
CCCATCAACCCCAAACAATCTATGCGAGCCGGTATCTCATCATTTTGTTG
TCATTCCCCCTGCCCACGATGTCTCCGCCCGCTGCCCCGCCAATATTCAG
GCTTCGTCCCAATCACAACGATCAACAACGACAACAACAGAGCCATGACT
TCCGTCCACAAGCCCGACCTCTCCGGCCTGCCCGCCTTCAACGTCGCTGG
CGGTCGCCCCGACGAGCGCTTCGGTACCAGGGGCTCCTTCACCCGCGGCG
TGCACATCATGTCCGGTGGCCATGCTCGCGATGTACCGCTCGAGGCCGAG
GTCGACCACGGGAAGGTGCTCTTCGTGTCCGCCATCCACAAGCCGGACCT
CTCCGCCGAGGCCCGCACCAACGCCGTCCGACCCATGGAGCGCCTTGGAG
CCCGCGGCCGCTTCACGCCGGGGGGGCGTCGCTGGGCCGGTGGCAAGCCT
CGCGACGTACCGCTCGAGGCCGAGGTCGACCACGGCAAGGTGCTCTTCGT
GTCCGCCGTCCACAAGCCGGATCTCTCCGCCGAGGCCCGCACCAACGCCG
TCCGCCCGACGGAGCGCCTCGGCTCCCGGGGCCGCTTCACCGCGGGCGTC
CGTCGCTGGGCCGGTGGCGAGCCTCGTGACGTGCCGCTCCCGCGCGTGTG
CGACCCGGGTACCGTCCTGTTCGAGTCCGCCTCGGAACGTAGCAGGCCCT
CCTTGTCCTTTTCGCGCGAGACCAACGTGTCCGGAGGCAGGCAGGACGAG
CGCCACGGGCGGCTGGGATCGTTCGAGCACGGGGTCGTCGAGGCTCGGGG
AGGGCCGCTGCAGGTTCAGGCGGCCTTCGCGCGCGATGTGGAGCAGCTGT
GGCACGAGGGCGGGCAGAAGGAGAACAAGTACCGCCGCTGCGGGCCCAGC
CACTTCGTCGCCGGCGTGTCTATTCTGTCGGGCGGCATGCCGGTCTACTG
AGAGTAGAGAATGACTGCTGTTGCTACTGTAAGGAGAGTATGAGGCGCTT
GTCATGCTGTCCGCCTCATGCGTGGTTGGTCATTCACCAAAGGTTGCTCA
TTGTTGGCAGCGTGTTAGNCTATTCTGTCGGGCGGCATGCCGGTCTACTG
AGAGTAGAGAATGACTGCTGTAGCTACTGTAAGGAGAGTATGAGGCGCTT
GTCATGCTGTCGACCTCATGCGTGGTTGGTCATTCACCAAAGGTTGCTCA
TTGTTGGCAGCGTGTTAGCGTGTTTGGTCTTCCACCGGCACCAGCGCGAA
CTTACCGTTGATTTCTTTTTTGAGAGAGGGGGCAATGTTGAGAAGGTTGC
TATCCTTTCGGGTCGTTTTACATCGATGGGTGCCTGTGGTGTGCTACATG
TTGAGAGCACCACGCAGCGGCGGCGGGGTTGTGGTTCCGTTCGGCTTGCC
TCGTACCGCCGGGTAGGTGCAGAGGTGCAGAGTAGATGATTTGTGTATCA
ATGCATATGCTCGTGCAGCAAATTGGTATTTTCAAAGCACGGCAGCACTG
ACTGTTCGTCGTCGCTCGGGGTCATACGTTCCAGGACCAAGATGGTCGGC
TTGAATAAACGTTGTTCATGACTTGTTCGTGACGAGTGTTGGAGGAGTCG
AACAAGTTAAGAAGTTCGTGGTGTTGTAGTTGATAGAATAGTTGATAGAA
ATAGTACCAGTAGGGGATACGAGAGCACTGTTGTGGATGCAGTGCTTCAC
ATCCATCATCCATACGATGAACAAACTGCTTTGGACTAGTGTGTTGTGTG
GGAAGGGATGATTAGAAGTGATGACCTGTGTTGGACATGATGCTATGTGA
AGTGGTTGTTGTCTCAAGGGGGGCGAAAGCGGTAGTTGTTCGTCCGTGTA
CACCCTCCCCGCCCCATCGACCCCCGGCAAGGGATCCAGTACTGAATTGG
GGTACAAGAGATTCTCGGCTAGTGTCATTGTCGCCGCTAAGGTTTCGTGT
GGTATTCGTCTCGGTGTCTGTTTTTTCAATAATGGATGGGGGTACGGTGG
TGGGTGTTGACGTGACGTGCATGGCGTTACTTGAAGGATATTTTTTCATT
CCGATCGACATATTAGTCCGAGAACGATGAATATAGAAAGGTGTGTACTA
GTAGACTCTACTGCTGCTGTAGTTTAGTTGTGCCTCTTTGCTGTTGTTTT
GCGAGGGGGTGCTCTAGCGGGGGGGACGCCATGACGCGCACATGATTAAA
GGAGAGCGGGAGATACGTAGAAATATCCAGGAATTGAATGGGTTTGGCGT
GAGCGGGTGTTTGGGCGTGCATACGGCGGAGGACGTCGAGTTCAACTTCG
CCGGGTAAGTTCTTCTTTGCGAAACGCAAGAATATGAACTTTCTCGCCTT
CTTTGAGGCACGCACACAACAAATATTCCAGCGGGAACTTTCTCCTAGTA
CTTCCAGAGAAAATCGAA back to topCoding sequence (CDS) from alignment at Scaffold_604:167084..171801+ >EsuBft329_11a-0001 ID=EsuBft329_11a-0001|Name=EsuBft329_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=633bp|location=Sequence derived from alignment at Scaffold_604:167084..171801+ (Ectocarpus subulatus male Bft15b)
ATGACTTCCGTCCACAAGCCCGACCTCTCCGGCCTGCCCGCCTTCAACGT
CGCTGGCGGTCGCCCCGACGAGCGCTTCGGTACCAGGGGCTCCTTCACCC
GCGGCGTGCACATCATGTCCGGTGGCCATGCTCGCGATGTACCGCTCGAG
GCCGAGGTCGACCACGGCAAGGTGCTCTTCGTGTCCGCCGTCCACAAGCC
GGATCTCTCCGCCGAGGCCCGCACCAACGCCGTCCGCCCGACGGAGCGCC
TCGGCTCCCGGGGCCGCTTCACCGCGGGCGTCCGTCGCTGGGCCGGTGGC
GAGCCTCGTGACGTGCCGCTCCCGCGCGTGTGCGACCCGGGTACCGTCCT
GTTCGAGTCCGCCTCGGAACGTAGCAGGCCCTCCTTGTCCTTTTCGCGCG
AGACCAACGTGTCCGGAGGCAGGCAGGACGAGCGCCACGGGCGGCTGGGA
TCGTTCGAGCACGGGGTCGTCGAGGCTCGGGGAGGGCCGCTGCAGGTTCA
GGCGGCCTTCGCGCGCGATGTGGAGCAGCTGTGGCACGAGGGCGGGCAGA
AGGAGAACAAGTACCGCCGCTGCGGGCCCAGCCACTTCGTCGCCGGCGTG
TCTATTCTGTCGGGCGGCATGCCGGTCTACTGA back to top
|