EsuBft3291_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3291_2a-0001
Unique NameEsuBft3291_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:213900..215856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3291_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length169
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3291_2aEsuBft3291_2aEctocarpus subulatus male Bft15bgeneScaffold_647 213900..215856 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3291_2a-0001-exonagat-exon-23946Ectocarpus subulatus male Bft15bexonScaffold_647 213900..213923 +
EsuBft3291_2a-0001-exonEsuBft3291_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 214182..215856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3291_2a-0001-cdsEsuBft3291_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 213900..213923 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3291_2a-0001-exonagat-three_prime_utr-12882Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 214299..215856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3291_2a-0001EsuBft3291_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 213900..214298 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3291_2a-0001 ID=EsuBft3291_2a-0001|Name=EsuBft3291_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1699bp|location=Sequence derived from alignment at Scaffold_647:213900..215856+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCGGGTTGTACCCGCAAGCACATCAGTGGCCGTGGCTGCCTTCT
ACCAAGAGCGGGAGGGGGCAGCGAAGATCAAGGCGCGTGGGGTACCGCGT
GCACTCTACATCATCAGCTGGCGGGGCCCGGAAATACGTAGCTGTGGGAT
GGTGGAGTTCAAAGGCACGAGTCATGTGCCTGTCTGCTACACCGCTACAC
CGAGGAACGTCGGGACGCCGAGGGACGTCGGGTGTGGGCGGGTGGGGAGG
GAAGCAAAACGGACCAGCTGCGCGGTGGATTTCCGCGGGCACTATCTTCA
TTTTGGTTGGTACCGGAATGTGTTTTATTCTATTTTATTTTTTGTGATTC
TTTTGTATGTGGCGTCTAGCAGTAACGGGCGATAACTTGTATTGCACGTG
AATAGTCGCAAGTGAGGCGCTGTTGCGGACTTGCATAGATCGCTGTTAAT
TGCTTGTTGAAATCCATGGGTGTTTCCGCCGCCACATGCTCGAGTTTCAC
GCGTCACCGCTTGTTTTGTGTTCCCTGTGTGGCCTGTGTGGTTGCAGAAT
AAGGGAGGGTGGCGCCGTGCGTGTTTTGTTTTTGTTTTGGAGGGTGTAGT
GCTCGGAGAATTTTGCGCCCGGTCTGCAGATATTCTGCAACGTGACAGAG
TTATGGTCGTCCTCTCATGATTGAGGTGTAACTATTTCGATCTTGCTGTC
ATTGGATGACGGAGGGCGTTGCCTCTTGGGTGTTGTTGGACTCTATTTAC
GGGAGGAGTTTGGTCGTGTTTCCACGATGTTGCATGTACCATGTGTCTGA
TTTGTTGATTGAATGCTGGACGATCGCCACGTGTATGTGCTTCTAGGCAA
CCAAGTGACTGAGTAGTCTGGTGAATAAGACCATGTAACGAGTAAGGTTA
CGCCGGGAGTTCGAATCTCACCAGGCGTCGCCCTTGTTCAAGGAATGAAG
AAAGGAAAGCGCCTTTCCGAGAAGGGGAAAGCGACGCGCGTTGTTTGGCA
CACTAGAGAGGGCGTATGAAGTCGTCCCCAACTACTAGGCATGTGTTGCG
TAAGGAAGGACATACGGCGTGTAGACTATCAGTGTTATTCGAGGAGCGGA
CAATGGATATCAGGTGCATTGTAGGTGGCTATTATGGCCAAGTTTGTCGT
ACGACCTCACCAGAAGGGTAGGGGCGTGATTGATGATTTGTTTTTGTGCT
GCGCAGGGAGGACCTTGTCGAGTCAGCCGAGCGTGGCGTAGAGAGCGAGC
CGGGGGCGGTGGTAGATATTGTCTTGCCTTGATGTTGCAGTACGGCCGTT
GGAATCTTTCATGATATAAACGGCGTGAAGGCGTTGAGATTTGTAAGGGG
TTTTGATCCGATGGCGGGTTTCCCCTTGTTTCTGATTTGCGTTGTTTTAG
GTGCTTTTCGGATGTACTCTTCGACGCACGAGTGGTGGTTATTCACTGGC
GTAAAGAACCAAGGGAGGGTGTTCGTGCGTGGAGGTAGAATAGTCGGATT
GTACCATATCACTGGCGGTTTCGTGTACCGCAGATGGGATTGCCTTGAGG
GGCGGCTAGGAGAGACCTTGAGATACGAGTTGCGGGCCCCCTTTTCGACT
GGCTTTGGGCCTGGCACTCTTCCTCCCTCCTTCTCCCTCATGTGCCTCTA
CGATAATACATGCCGTTAACAACACTCTTTGGACTCTGGAGGTCANACC
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protein sequence of EsuBft3291_2a-0001

>EsuBft3291_2 ID=EsuBft3291_2|Name=EsuBft3291_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=46bp
MPAGCTRKHISGRGCLLPRAGGGSEDQGAWGTACTLHHQLAGPGNT
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mRNA from alignment at Scaffold_647:213900..215856+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3291_2a-0001 ID=EsuBft3291_2a-0001|Name=EsuBft3291_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1957bp|location=Sequence derived from alignment at Scaffold_647:213900..215856+ (Ectocarpus subulatus male Bft15b)
ATGCCCGCGGGTTGTACCCGCAAGGTATGTGGCCCGCGAACACGGTTGGA
GAACATCCGTGTACACTTGAGAGTAGTGTGTGCTCTCTTGTGTTTATCCC
CATTAAGGAGCGTGTAGGAGGGGGCACGTGAACCCAACCCGTCGTGTGTG
CGGGGAAGGGTACCAGAAAAATCTTGCTGGCCCCGATGGATATGCGGGGA
GAGAAGTGCTTCCTGGCCCCGATGGATAGGGTATCACGGGAGTTGTGTGA
GAAGTGCTGGAGTATTTGGCCACACCCAGCAGCACATCAGTGGCCGTGGC
TGCCTTCTACCAAGAGCGGGAGGGGGCAGCGAAGATCAAGGCGCGTGGGG
TACCGCGTGCACTCTACATCATCAGCTGGCGGGGCCCGGAAATACGTAGC
TGTGGGATGGTGGAGTTCAAAGGCACGAGTCATGTGCCTGTCTGCTACAC
CGCTACACCGAGGAACGTCGGGACGCCGAGGGACGTCGGGTGTGGGCGGG
TGGGGAGGGAAGCAAAACGGACCAGCTGCGCGGTGGATTTCCGCGGGCAC
TATCTTCATTTTGGTTGGTACCGGAATGTGTTTTATTCTATTTTATTTTT
TGTGATTCTTTTGTATGTGGCGTCTAGCAGTAACGGGCGATAACTTGTAT
TGCACGTGAATAGTCGCAAGTGAGGCGCTGTTGCGGACTTGCATAGATCG
CTGTTAATTGCTTGTTGAAATCCATGGGTGTTTCCGCCGCCACATGCTCG
AGTTTCACGCGTCACCGCTTGTTTTGTGTTCCCTGTGTGGCCTGTGTGGT
TGCAGAATAAGGGAGGGTGGCGCCGTGCGTGTTTTGTTTTTGTTTTGGAG
GGTGTAGTGCTCGGAGAATTTTGCGCCCGGTCTGCAGATATTCTGCAACG
TGACAGAGTTATGGTCGTCCTCTCATGATTGAGGTGTAACTATTTCGATC
TTGCTGTCATTGGATGACGGAGGGCGTTGCCTCTTGGGTGTTGTTGGACT
CTATTTACGGGAGGAGTTTGGTCGTGTTTCCACGATGTTGCATGTACCAT
GTGTCTGATTTGTTGATTGAATGCTGGACGATCGCCACGTGTATGTGCTT
CTAGGCAACCAAGTGACTGAGTAGTCTGGTGAATAAGACCATGTAACGAG
TAAGGTTACGCCGGGAGTTCGAATCTCACCAGGCGTCGCCCTTGTTCAAG
GAATGAAGAAAGGAAAGCGCCTTTCCGAGAAGGGGAAAGCGACGCGCGTT
GTTTGGCACACTAGAGAGGGCGTATGAAGTCGTCCCCAACTACTAGGCAT
GTGTTGCGTAAGGAAGGACATACGGCGTGTAGACTATCAGTGTTATTCGA
GGAGCGGACAATGGATATCAGGTGCATTGTAGGTGGCTATTATGGCCAAG
TTTGTCGTACGACCTCACCAGAAGGGTAGGGGCGTGATTGATGATTTGTT
TTTGTGCTGCGCAGGGAGGACCTTGTCGAGTCAGCCGAGCGTGGCGTAGA
GAGCGAGCCGGGGGCGGTGGTAGATATTGTCTTGCCTTGATGTTGCAGTA
CGGCCGTTGGAATCTTTCATGATATAAACGGCGTGAAGGCGTTGAGATTT
GTAAGGGGTTTTGATCCGATGGCGGGTTTCCCCTTGTTTCTGATTTGCGT
TGTTTTAGGTGCTTTTCGGATGTACTCTTCGACGCACGAGTGGTGGTTAT
TCACTGGCGTAAAGAACCAAGGGAGGGTGTTCGTGCGTGGAGGTAGAATA
GTCGGATTGTACCATATCACTGGCGGTTTCGTGTACCGCAGATGGGATTG
CCTTGAGGGGCGGCTAGGAGAGACCTTGAGATACGAGTTGCGGGCCCCCT
TTTCGACTGGCTTTGGGCCTGGCACTCTTCCTCCCTCCTTCTCCCTCATG
TGCCTCTACGATAATACATGCCGTTAACAACACTCTTTGGACTCTGGAGG
TCANACC
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Coding sequence (CDS) from alignment at Scaffold_647:213900..215856+

>EsuBft3291_2a-0001 ID=EsuBft3291_2a-0001|Name=EsuBft3291_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=141bp|location=Sequence derived from alignment at Scaffold_647:213900..215856+ (Ectocarpus subulatus male Bft15b)
ATGCCCGCGGGTTGTACCCGCAAGCACATCAGTGGCCGTGGCTGCCTTCT
ACCAAGAGCGGGAGGGGGCAGCGAAGATCAAGGCGCGTGGGGTACCGCGT
GCACTCTACATCATCAGCTGGCGGGGCCCGGAAATACGTAG
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