EsuBft3285_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3285_3a-0001
Unique NameEsuBft3285_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_287contigScaffold_287:12118..12399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005100316.1
ProteomeIdEsuBft3285_3
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length28
Evalue1.17e-07
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00004,RC00043,RC00070,RC02816
KEGG koko:K01908
KEGG ReactionR00926,R01354
KEGG Pathwayko00640,ko01100,map00640,map01100
EC6.2.1.17
DescriptionRibonuclease H protein
COG categoryE
BRITEko00000,ko00001,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3285_3aEsuBft3285_3aEctocarpus subulatus male Bft15bgeneScaffold_287 12118..12399 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3285_3a-0001-exonEsuBft3285_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_287 12118..12399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3285_3a-0001-cdsEsuBft3285_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_287 12118..12399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3285_3a-0001EsuBft3285_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_287 12118..12399 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3285_3a-0001 ID=EsuBft3285_3a-0001|Name=EsuBft3285_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=282bp|location=Sequence derived from alignment at Scaffold_287:12118..12399- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGTGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCGGGTTCG
AACGGACGACGGGCAGTACTCGGAATGGTTTGACGTCGGCCAAGGTCTCC
GACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTGTTCTCTGCCGCG
ATGCGCATGGTCGCAGTGACCGGGTTCGACAAGGACCCCAACGTGACGGC
GGATATGATCAAGATCGCAACCCGAGTGGAGTGCACGGGCAAGAGGGGCA
GGTCGGCGGGGAAGAAGGCGATGATGGNNNNN
back to top

protein sequence of EsuBft3285_3a-0001

>EsuBft3285_3 ID=EsuBft3285_3|Name=EsuBft3285_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=94bp
MLVVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAA
MRMVAVTGFDKDPNVTADMIKIATRVECTGKRGRSAGKKAMMXX
back to top

mRNA from alignment at Scaffold_287:12118..12399-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3285_3a-0001 ID=EsuBft3285_3a-0001|Name=EsuBft3285_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=282bp|location=Sequence derived from alignment at Scaffold_287:12118..12399- (Ectocarpus subulatus male Bft15b)
ATGCTGGTGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCGGGTTCG
AACGGACGACGGGCAGTACTCGGAATGGTTTGACGTCGGCCAAGGTCTCC
GACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTGTTCTCTGCCGCG
ATGCGCATGGTCGCAGTGACCGGGTTCGACAAGGACCCCAACGTGACGGC
GGATATGATCAAGATCGCAACCCGAGTGGAGTGCACGGGCAAGAGGGGCA
GGTCGGCGGGGAAGAAGGCGATGATGGNNNNN
back to top

Coding sequence (CDS) from alignment at Scaffold_287:12118..12399-

>EsuBft3285_3a-0001 ID=EsuBft3285_3a-0001|Name=EsuBft3285_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=282bp|location=Sequence derived from alignment at Scaffold_287:12118..12399- (Ectocarpus subulatus male Bft15b)
ATGCTGGTGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCGGGTTCG
AACGGACGACGGGCAGTACTCGGAATGGTTTGACGTCGGCCAAGGTCTCC
GACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTGTTCTCTGCCGCG
ATGCGCATGGTCGCAGTGACCGGGTTCGACAAGGACCCCAACGTGACGGC
GGATATGATCAAGATCGCAACCCGAGTGGAGTGCACGGGCAAGAGGGGCA
GGTCGGCGGGGAAGAAGGCGATGATGGNNNNN
back to top