EsuBft3285_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3285_2a-0001
Unique NameEsuBft3285_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_287contigScaffold_287:15343..15658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3285_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length31
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3285_2aEsuBft3285_2aEctocarpus subulatus male Bft15bgeneScaffold_287 15343..15658 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3285_2a-0001-exonEsuBft3285_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_287 15343..15658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3285_2a-0001-cdsEsuBft3285_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_287 15343..15603 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3285_2a-0001-exonagat-three_prime_utr-12865Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_287 15604..15658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3285_2a-0001EsuBft3285_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_287 15343..15603 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3285_2a-0001 ID=EsuBft3285_2a-0001|Name=EsuBft3285_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=316bp|location=Sequence derived from alignment at Scaffold_287:15343..15658+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCATCTGGAGTCCTTCGGGGGGGGCTCCGCAGAGCGGGAGCACGGA
GGCTGCCGCTCGCCCGCAGGTGCGAGTTGTGGGAGCAGAGGAGGGTATCC
GCTACTCCCGAGTTTGGTTATTACGCCGACTCAGGACTAAGTCGAGCAGC
GCGGGTAGCGCCGCTGGGGGGCAACCAGTTTGCCCCGGACGCACGGTCTG
GTGCGTCAAAAGCGTTTTGAGAGCCAACGGGTCTACTTCAATCTGGTTAG
TGTGCGTGTGATGAGTGCCGTGCTTGTAATCAGATAGGCTTGAAGTAGTT
TGGCTGATCTCGAAAT
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protein sequence of EsuBft3285_2a-0001

>EsuBft3285_2 ID=EsuBft3285_2|Name=EsuBft3285_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=86bp
MSIWSPSGGAPQSGSTEAAARPQVRVVGAEEGIRYSRVWLLRRLRTKSSS
AGSAAGGQPVCPGRTVWCVKSVLRANGSTSIWLVCV
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mRNA from alignment at Scaffold_287:15343..15658+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3285_2a-0001 ID=EsuBft3285_2a-0001|Name=EsuBft3285_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=316bp|location=Sequence derived from alignment at Scaffold_287:15343..15658+ (Ectocarpus subulatus male Bft15b)
ATGTCCATCTGGAGTCCTTCGGGGGGGGCTCCGCAGAGCGGGAGCACGGA
GGCTGCCGCTCGCCCGCAGGTGCGAGTTGTGGGAGCAGAGGAGGGTATCC
GCTACTCCCGAGTTTGGTTATTACGCCGACTCAGGACTAAGTCGAGCAGC
GCGGGTAGCGCCGCTGGGGGGCAACCAGTTTGCCCCGGACGCACGGTCTG
GTGCGTCAAAAGCGTTTTGAGAGCCAACGGGTCTACTTCAATCTGGTTAG
TGTGCGTGTGATGAGTGCCGTGCTTGTAATCAGATAGGCTTGAAGTAGTT
TGGCTGATCTCGAAAT
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Coding sequence (CDS) from alignment at Scaffold_287:15343..15658+

>EsuBft3285_2a-0001 ID=EsuBft3285_2a-0001|Name=EsuBft3285_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=261bp|location=Sequence derived from alignment at Scaffold_287:15343..15658+ (Ectocarpus subulatus male Bft15b)
ATGTCCATCTGGAGTCCTTCGGGGGGGGCTCCGCAGAGCGGGAGCACGGA
GGCTGCCGCTCGCCCGCAGGTGCGAGTTGTGGGAGCAGAGGAGGGTATCC
GCTACTCCCGAGTTTGGTTATTACGCCGACTCAGGACTAAGTCGAGCAGC
GCGGGTAGCGCCGCTGGGGGGCAACCAGTTTGCCCCGGACGCACGGTCTG
GTGCGTCAAAAGCGTTTTGAGAGCCAACGGGTCTACTTCAATCTGGTTAG
TGTGCGTGTGA
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