EsuBft3276_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3276_3a-0001
Unique NameEsuBft3276_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_385contigScaffold_385:10235..10690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FJH0
ProteomeIdEsuBft3276_3
Protein domainsIPR012606
Protein domainsIPR000589
Protein domainsIPR009068
Protein domainsPTHR11885
Ownerapollo_admin@sb-roscoff.fr
Note40s ribosomal protein s13 os:glycine max gn:rps13 pe:2 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length393
Hectar predicted targeting categoryother localisation
Evalue2.98e-70
EggNOG OGsCOG0184@1|root,KOG0400@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameRPS13
KEGG koko:K02953
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000462,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033119,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042274,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045934,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070013,GO:0070181,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904,GO:1990932
Descriptionsmall ribosomal subunit rRNA binding
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0010468
GO0033119
GO0000184
GO0004571
GO0005730
GO0070062
GO0006614
GO0009507
GO0006415
GO0003333
GO0006414
GO0006413
GO0019083
GO0010090
GO0001510
GO0009965
GO0000911
GO0003735
GO0009664
GO0003729
GO0022627
GO0042545
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3276_3aEsuBft3276_3aEctocarpus subulatus male Bft15bgeneScaffold_385 10235..10690 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3276_3a-0001-exonEsuBft3276_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_385 10235..10453 +
EsuBft3276_3a-0001-exonagat-exon-71424Ectocarpus subulatus male Bft15bexonScaffold_385 10517..10690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3276_3a-0001-cdsEsuBft3276_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_385 10235..10453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3276_3a-0001EsuBft3276_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_385 10235..10690 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3276_3a-0001 ID=EsuBft3276_3a-0001|Name=EsuBft3276_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=393bp|location=Sequence derived from alignment at Scaffold_385:10235..10690+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCGCATGCACAGCGGTGGGAAGGGTATCTCCAAGTCTTCTCTCCT
CTGCAAGAGGAGCCCGCCCTCGTGGCTCAAGATCTCCGCCCAGGAGGTTA
CTGAGCACGTGTGCAAGCTGGCCAAGAAGCGTCTCACTCCTTCTCAGATC
GGTGTGATCCTGCGTGACTCCAAAGGTATCGCTCAGGTCCGCGCCATCAC
CGGCTCCAAGATCCTCCGCGCAGTGGCGGTGCGCAAGCACCTGGAGCGCG
CCCGGTCCGACAAGGACTCCAAGTTCCGCCTTATCCTCATCGAGTCTCGC
ATCCACCGCCAGGCAAGGTACTACAGGACGAACCGCAAGCTGCCAGCCAA
CTGGAAGTACGAGTCCTCGAGCGCCAGCGCTCTGGTCGCTTAG
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protein sequence of EsuBft3276_3a-0001

>EsuBft3276_3 ID=EsuBft3276_3|Name=EsuBft3276_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=130bp
MGRMHSGGKGISKSSLLCKRSPPSWLKISAQEVTEHVCKLAKKRLTPSQI
GVILRDSKGIAQVRAITGSKILRAVAVRKHLERARSDKDSKFRLILIESR
IHRQARYYRTNRKLPANWKYESSSASALVA
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mRNA from alignment at Scaffold_385:10235..10690+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3276_3a-0001 ID=EsuBft3276_3a-0001|Name=EsuBft3276_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=456bp|location=Sequence derived from alignment at Scaffold_385:10235..10690+ (Ectocarpus subulatus male Bft15b)
ATGGGGCGCATGCACAGCGGTGGGAAGGGTATCTCCAAGTCTTCTCTCCT
CTGCAAGAGGAGCCCGCCCTCGTGGCTCAAGATCTCCGCCCAGGAGGTTA
CTGAGCACGTGTGCAAGCTGGCCAAGAAGCGTCTCACTCCTTCTCAGATC
GGTGTGATCCTGCGTGACTCCAAAGGTATCGCTCAGGTCCGCGCCATCAC
CGGCTCCAAGATCCTCCGCGTGCTTAAGGCCAATGGCCTTGCCGCCGAGA
TCCCCGAGGACCTTTACATGGTCATCAAGTAGGCAGTGGCGGTGCGCAAG
CACCTGGAGCGCGCCCGGTCCGACAAGGACTCCAAGTTCCGCCTTATCCT
CATCGAGTCTCGCATCCACCGCCAGGCAAGGTACTACAGGACGAACCGCA
AGCTGCCAGCCAACTGGAAGTACGAGTCCTCGAGCGCCAGCGCTCTGGTC
GCTTAG
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Coding sequence (CDS) from alignment at Scaffold_385:10235..10690+

>EsuBft3276_3a-0001 ID=EsuBft3276_3a-0001|Name=EsuBft3276_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=393bp|location=Sequence derived from alignment at Scaffold_385:10235..10690+ (Ectocarpus subulatus male Bft15b)
ATGGGGCGCATGCACAGCGGTGGGAAGGGTATCTCCAAGTCTTCTCTCCT
CTGCAAGAGGAGCCCGCCCTCGTGGCTCAAGATCTCCGCCCAGGAGGTTA
CTGAGCACGTGTGCAAGCTGGCCAAGAAGCGTCTCACTCCTTCTCAGATC
GGTGTGATCCTGCGTGACTCCAAAGGTATCGCTCAGGTCCGCGCCATCAC
CGGCTCCAAGATCCTCCGCGCAGTGGCGGTGCGCAAGCACCTGGAGCGCG
CCCGGTCCGACAAGGACTCCAAGTTCCGCCTTATCCTCATCGAGTCTCGC
ATCCACCGCCAGGCAAGGTACTACAGGACGAACCGCAAGCTGCCAGCCAA
CTGGAAGTACGAGTCCTCGAGCGCCAGCGCTCTGGTCGCTTAG
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