EsuBft3262_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3262_4a-0001
Unique Name	EsuBft3262_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_242	contig	Scaffold_242:875959..877455 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G722
ProteomeId	EsuBft3262_4
Protein domains	IPR011990
Protein domains	PTHR19959
Protein domains	SSF48452
Protein domains	PF13374
Owner	apollo_admin@sb-roscoff.fr
Note	kinesin light chain os:doryteuthis pealeii pe:2 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	1339
Hectar predicted targeting category	other localisation
Evalue	8.58e-10
EggNOG OGs	COG0457@1\|root,KOG4658@1\|root,KOG1840@2759\|Eukaryota,KOG4658@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K10407
KEGG Pathway	ko05132,map05132
Description	ADP binding
COG category	S
BRITE	ko00000,ko00001,ko03019,ko04812

Cross References

External references for this mRNA


Database	Accession
GO	0030426
GO	0035418
GO	0031410
GO	0016938
GO	0051726
GO	0048675
GO	0048489
GO	0005794
GO	0051295
GO	0035617
GO	0003333
GO	0005635
GO	0007018
GO	0003777
GO	0002119
GO	0046843
GO	0007596
GO	0040011
GO	0005829
GO	0019894
GO	0019886
GO	0040038

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3262_4a	EsuBft3262_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_242 875959..877455 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3262_4a-0001-exon	EsuBft3262_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 875959..877126 -
EsuBft3262_4a-0001-exon	agat-exon-9337	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 877175..877297 -
EsuBft3262_4a-0001-exon	agat-exon-9338	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 877408..877455 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3262_4a-0001-exon	agat-three_prime_utr-12802	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_242 875959..876907 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3262_4a-0001-cds	EsuBft3262_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_242 876908..877126 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3262_4a-0001	EsuBft3262_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_242 876908..877455 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_242:875959..877455-
coding sequence from alignment at Scaffold_242:875959..877455-

spliced messenger RNA

>EsuBft3262_4a-0001 ID=EsuBft3262_4a-0001|Name=EsuBft3262_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1339bp|location=Sequence derived from alignment at Scaffold_242:875959..877455- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGAACAAATGCTCAACAACCGCGCCGGAGTTGTTGAAGGCACAGGG
CAAGTACGACGACGCCGAACAACTTTATGAGCGATCTCTAGCCATACGAG
AGAAGGTACTTGGTCCAGAACATCCAGACGTGGCCCAGTCGCTCAACAAC
CGGGAGTTGTTGAGAGCGCAGATTTCGGTAGTGCTCAACAACAGGGGCGG
AGTTATTGGAGATTCAGGTGAGAGTCAAGCGGTGCTTCTAGAAGCATCTA
GAAAAACCATGTCCCTCCACAGGTTTACAACCCTTGTGCTACAACACGAC
CCTATCACGCTGTCGACTCCATTCCATGGGAAGTATTTTGAGACCGAGCC
GTTGTATGGGCGGTCCACCGCGATTTGGGAGAAGCGCTAGGTGCTGACCA
CCCAACAGTTGCCACCTTGCTCAACAACCGGGCGGGGGTGTTAGGGAGGC
AGGTGAACCTTTCGTTGAGAAAACGATCTTCTCCGCAGTTCTAGATCTTA
TTATGACTTTCGTCCGCCTCTCTGCCGCGCCGTTCACCTCGTATCATGGC
ACGTGTGCTGAGACAGAGCTACTCTCCGAACAGTCATGAACCATTGGAGG
GAGGGCTCGGGGCCTGGAGTACCCAGATGTGTATAGGCGGTCGACAACCG
GGCGGGGTCGATTGAGAAGGTTTTATTCTCGCACGTGTTGTAGATGTCAC
TTTGATTGTACTATACCGTATTTGTGCGTGCGATAGCCCCGGGGTGCGAT
CGTTGTTTATGTCATTCCTATGTTGGTTTTTTACCACACCACGGTGCCTT
AAATAACACCGATGGGTGCCGTAACACCGATACCGGTACGGAAATGCAAT
TAAATCATTTCGTTCTAGATTTCCAACGCACCCCCGGTGCGATGACACCG
ATGGGTGCGATTTGGAGAACTTACAGTGGCCATGATACGGTGCTGAGTGA
ACGCACCCCGGTGCGATGACACCGATGGGTGAGATACTCGAAAACGAACA
GGCGGTTCCTGGTACATGTAGCTTGCGTGGGCGGTACCATGCAAACAGCC
CGGAGTGGTGATCAGTGATGACGTCGAATCCGAGTTTGGGGTGGCGTGGT
GCCAAAGAGAACCGACTCTGTGGTTCCCTGCTGGGGAAGGTATACGGCAC
CGCATCATTTTTCTTCCAGCCTCTTTGTTGGTCGCAAGCCCCTCTTTTGT
TGGCTGGTGCTTCCCTCTTGTCTGCCTCAAGGGGCATGGCACCGGTACAA
TCGAAGTACCGTTAACGAACTCCTTCTTCTTCTTGTTCGGTTGGTTGGAG
GTACGGGATGTGTACTGCTGTGTGCTTGGTTGAGTGAGT

protein sequence of EsuBft3262_4a-0001

>EsuBft3262_4 ID=EsuBft3262_4|Name=EsuBft3262_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=129bp
MRNKCSTTAPELLKAQGKYDDAEQLYERSLAIREKVLGPEHPDVAQSLNN
RELLRAQISVVLNNRGGVIGDSGESQAVLLEASRKTMSLHRFTTLVLQHD
PITLSTPFHGKYFETEPLYGRSTAIWEKR

mRNA from alignment at Scaffold_242:875959..877455-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3262_4a-0001 ID=EsuBft3262_4a-0001|Name=EsuBft3262_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1497bp|location=Sequence derived from alignment at Scaffold_242:875959..877455- (Ectocarpus subulatus male Bft15b)
ATGCGGAACAAATGCTCAACAACCGCGCCGGAGTTGTTGAAGGCACAGGT
GAGAGCCACCAGATTTTTCCAGGAATTTTCGTAGGGTTTACCGTGTCCAT
GTATCTGTTCAGACCCTGGCGAACCGCTCCCTCACATAACCCACTTCTTG
CTATGCAGGGCAAGTACGACGACGCCGAACAACTTTATGAGCGATCTCTA
GCCATACGAGAGAAGGTACTTGGTCCAGAACATCCAGACGTGGCCCAGTC
GCTCAACAACCGGGAGTTGTTGAGAGCGCAGGTGAGAGCCATCAGGAAAT
TCTAGCAAGTTTCTTGTGCTACCCGATAGATTTCGGTAGTGCTCAACAAC
AGGGGCGGAGTTATTGGAGATTCAGGTGAGAGTCAAGCGGTGCTTCTAGA
AGCATCTAGAAAAACCATGTCCCTCCACAGGTTTACAACCCTTGTGCTAC
AACACGACCCTATCACGCTGTCGACTCCATTCCATGGGAAGTATTTTGAG
ACCGAGCCGTTGTATGGGCGGTCCACCGCGATTTGGGAGAAGCGCTAGGT
GCTGACCACCCAACAGTTGCCACCTTGCTCAACAACCGGGCGGGGGTGTT
AGGGAGGCAGGTGAACCTTTCGTTGAGAAAACGATCTTCTCCGCAGTTCT
AGATCTTATTATGACTTTCGTCCGCCTCTCTGCCGCGCCGTTCACCTCGT
ATCATGGCACGTGTGCTGAGACAGAGCTACTCTCCGAACAGTCATGAACC
ATTGGAGGGAGGGCTCGGGGCCTGGAGTACCCAGATGTGTATAGGCGGTC
GACAACCGGGCGGGGTCGATTGAGAAGGTTTTATTCTCGCACGTGTTGTA
GATGTCACTTTGATTGTACTATACCGTATTTGTGCGTGCGATAGCCCCGG
GGTGCGATCGTTGTTTATGTCATTCCTATGTTGGTTTTTTACCACACCAC
GGTGCCTTAAATAACACCGATGGGTGCCGTAACACCGATACCGGTACGGA
AATGCAATTAAATCATTTCGTTCTAGATTTCCAACGCACCCCCGGTGCGA
TGACACCGATGGGTGCGATTTGGAGAACTTACAGTGGCCATGATACGGTG
CTGAGTGAACGCACCCCGGTGCGATGACACCGATGGGTGAGATACTCGAA
AACGAACAGGCGGTTCCTGGTACATGTAGCTTGCGTGGGCGGTACCATGC
AAACAGCCCGGAGTGGTGATCAGTGATGACGTCGAATCCGAGTTTGGGGT
GGCGTGGTGCCAAAGAGAACCGACTCTGTGGTTCCCTGCTGGGGAAGGTA
TACGGCACCGCATCATTTTTCTTCCAGCCTCTTTGTTGGTCGCAAGCCCC
TCTTTTGTTGGCTGGTGCTTCCCTCTTGTCTGCCTCAAGGGGCATGGCAC
CGGTACAATCGAAGTACCGTTAACGAACTCCTTCTTCTTCTTGTTCGGTT
GGTTGGAGGTACGGGATGTGTACTGCTGTGTGCTTGGTTGAGTGAGT

Coding sequence (CDS) from alignment at Scaffold_242:875959..877455-

>EsuBft3262_4a-0001 ID=EsuBft3262_4a-0001|Name=EsuBft3262_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=390bp|location=Sequence derived from alignment at Scaffold_242:875959..877455- (Ectocarpus subulatus male Bft15b)
ATGCGGAACAAATGCTCAACAACCGCGCCGGAGTTGTTGAAGGCACAGGG
CAAGTACGACGACGCCGAACAACTTTATGAGCGATCTCTAGCCATACGAG
AGAAGGTACTTGGTCCAGAACATCCAGACGTGGCCCAGTCGCTCAACAAC
CGGGAGTTGTTGAGAGCGCAGATTTCGGTAGTGCTCAACAACAGGGGCGG
AGTTATTGGAGATTCAGGTGAGAGTCAAGCGGTGCTTCTAGAAGCATCTA
GAAAAACCATGTCCCTCCACAGGTTTACAACCCTTGTGCTACAACACGAC
CCTATCACGCTGTCGACTCCATTCCATGGGAAGTATTTTGAGACCGAGCC
GTTGTATGGGCGGTCCACCGCGATTTGGGAGAAGCGCTAG