EsuBft3262_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3262_3a-0001
Unique NameEsuBft3262_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:878690..881203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G180
ProteomeIdEsuBft3262_3
Protein domainsIPR011990
Protein domainsPTHR19959
Protein domainsPF13374
Protein domainsIPR019734
Protein domainsIPR002151
Protein domainsSSF48452
Protein domainsPF13424
Ownerapollo_admin@sb-roscoff.fr
Notekinesin light chain os:doryteuthis pealeii pe:2 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1747
Hectar predicted targeting categoryother localisation
Evalue7.74e-12
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptiondetermination of stomach left/right asymmetry
COG categoryC
Cross References
External references for this mRNA
DatabaseAccession
GO0016938
GO0051704
GO0044463
GO0048675
GO0048489
GO0051295
GO0005635
GO0007018
GO0003777
GO0002119
GO0016020
GO0040011
GO0019894
GO0040038
GO0065007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3262_3aEsuBft3262_3aEctocarpus subulatus male Bft15bgeneScaffold_242 878690..881203 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3262_3a-0001EsuBft3262_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 879918..881203 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3262_3a-0001-exonEsuBft3262_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 878690..880070 -
EsuBft3262_3a-0001-exonagat-exon-9336Ectocarpus subulatus male Bft15bexonScaffold_242 880353..880475 -
EsuBft3262_3a-0001-exonagat-exon-9335Ectocarpus subulatus male Bft15bexonScaffold_242 880781..880852 -
EsuBft3262_3a-0001-exonagat-exon-9334Ectocarpus subulatus male Bft15bexonScaffold_242 881033..881203 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3262_3a-0001-exonagat-three_prime_utr-12801Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 878690..879917 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3262_3a-0001-cdsEsuBft3262_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 879918..880070 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3262_3a-0001 ID=EsuBft3262_3a-0001|Name=EsuBft3262_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1747bp|location=Sequence derived from alignment at Scaffold_242:878690..881203- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTGTACGACTGCATGCCAGGGCAAGTACGTTGAGGCCGAGCCACT
GCTGTACGAGCGGTCACAGGCTAGAGGAGAGAAGGTGCTAGGTCTAGAGC
ATCCTGACGTACATGTCATGGCAAGTGTGCTGAGACAGAGCTACTCTTCG
AACGGTCTTGAGCCATTGGAGAAAGAACTAGGTCCGGAGCACCCTGACGT
GGCCACAACGCTCAACAACCGGGCGGGCTTGTTGGCTAATCAGGGCAAGT
ACATTGAGGCCGAGCCACTTTACGAGCGTTCACAAGCTATACGAGAGAAG
GTGCTGGGTCCGGAGCATTCTATTTTGGCAACGCTCAACAACCGGGCGTG
CTTTTTTGGGAGCCAGGGCAAGTACATTAAGGCAGAGCCACTGTTCGAGC
GATCACAGGGCATACAAGAGAAGGTGCTAGGTCCGGAACATCCTGGTGTG
GCTACCACACTCAACAACCGCGCCCCGGTTGTTGAGTCTCGTAGCAAGAG
TTGGGTGGTCAGGGCCTAGCGTCGGCTTCCTCGTGCTTGCCCTGTGTACA
AATCAGTGGGGTGGTGTAAGCGACTGGCCGAAGGAGAACCAAACCCTCAA
AACGAATGTGTACCCGCCGAAAGTTCCTGGAATTTTTCATGGCTCTCACC
TGACGCTCCAACAACGGGCGGGGTTGTTGATGAGTCAGGCGAGAGCCAAG
CGATTCTTCCTTCTAGAAGATGGTTCTTGATTTTCCTTCAAAGCTTTTCT
AGATGCTTCTAGATGCCTCTAGACCTCCGTTCTGGTTGTAGAACACGTGG
GACAATGTGAGCGCGGTGTCAATGGTCTGGGAGACTGTTGTTTCATCCGT
TAATTCATGTCCCGGTGGGAACTTCGCTACGGACCATGGCGGTGCCACCG
TAATTTCGCTGTCACGTTGCAATTTGTAAACTGTTCTCGAATGTTTCTTA
CAGAGAAAGTTCGCCGAGGCGCAGCCGTTGTTCGAAAGAGCTCTTTTTAT
CAAAGAAGTTGCTCTGGGGGTGGACCACCCGAGCAACTTCTTTGATAACC
AGAGCTCTTTCGAACAACGGCTGCGCCTCAGCTATCTTTCCCTGTAAAAA
ACGGTGTAGAGCCCACTTTAGGCGGCACCGTTCCGTAGCAACAGTTTGCA
AAACTGCCATTGTGACATGATTAAATGGAGGAAGATATAAGCCGGCTTCT
AGATCATTAACTGCCATGATTTGTTCTAGAAGCACACGAGAAGGTCTAAA
TAGTTTTGACAATACTTGTTCCTATCGTGCCTTTTACGTTTCAGGGCAAG
TACGACGAAGCCGGGCCGCTGTATGATCGTTCCCTTGCCATTTGCGAGAA
AGTTTACGGGCCTGATCATCCTGCGGTGGCAACAGTGCTCAACAACCAGG
CGGAGTTGTTGAGAGCGCAGTTGAGAGCCGCGAGACTTTTCCAGTTGAAA
TGTCTTGGCGGCCTGTGGATGTTGTACGTGGCGCTCAACAACCGTGCGGG
TTGTTGAAGAGTCAGGTGAGAGCCAAACGATATTTCTGGAAGCATGTGTA
ACGACTTCGGTCGTGCATTTTTTCCTCCGCAACGTAATCTACGATGATCG
CAATGACCACACCTTCCTCTCTCTTTTCCCTTGTATCGCAGGGAAAGTAT
GACGACGCGGAACCTTTGTACGTAAGAGCTATCGCTATCGGAGAGAAGGC
GTTGGGCCCAGAGCATCCAGATCTTGCCGTGTGGCTCAACAACCGGG
back to top

protein sequence of EsuBft3262_3a-0001

>EsuBft3262_3 ID=EsuBft3262_3|Name=EsuBft3262_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=172bp
MLCTTACQGKYVEAEPLLYERSQARGEKVLGLEHPDVHVMASVLRQSYSS
NGLEPLEKELGPEHPDVATTLNNRAGLLANQGKYIEAEPLYERSQAIREK
VLGPEHSILATLNNRACFFGSQGKYIKAEPLFERSQGIQEKVLGPEHPGV
ATTLNNRAPVVESRSKSWVVRA
back to top

mRNA from alignment at Scaffold_242:878690..881203-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3262_3a-0001 ID=EsuBft3262_3a-0001|Name=EsuBft3262_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2514bp|location=Sequence derived from alignment at Scaffold_242:878690..881203- (Ectocarpus subulatus male Bft15b)
ATGCTGTGTACGACTGCATGCCAGGGCAAGTACGTTGAGGCCGAGCCACT
GCTGTACGAGCGGTCACAGGCTAGAGGAGAGAAGGTGCTAGGTCTAGAGC
ATCCTGACGTACATGTCATGGCAAGTGTGCTGAGACAGAGCTACTCTTCG
AACGGTCTTGAGCCATTGGAGGTATGCTCGGGGCCTGGAGTACCCAGGTG
TGTCCAGACGTTCGACAATTGGGCGGGGTCGGTTGGATCCCACTTCGATT
GAACCTTTTTTTGCCACCTCTCCACGCTTTGTACGACTGCATGCCAGGGC
AAGTACATGAAGGCCGATTCAATGTACGAGCGTTCGTAAGCTATACAAGA
GAAAGAACTAGGTCCGGAGCACCCTGACGTGGCCACAACGCTCAACAACC
GGGCGGGCTTGTTGGCTAATCAGGTGAGAACCGAACGGCTCTTCTAGAAG
ACAATCTTCCTCCGCAGTTCTAGATCTCGAACTGAACCACGTCCGGCTCT
CTGCCGCGCTGTTCACCGCTTGTCATGGCAAGTGTGCTGAGACAGAGCTA
CTCTTCGGCGGTCATGGTCCATTGAAGGAAAGTCTCGGTGCCTGGAGTAC
CCAGATATGCCCAGGCGGTCGACAACCGGGCGGAGGCGGTTGAAGGTTTT
AGTCCACACTTGCTGTAGATCCCACTTTGGTTGAACCATAAATAGAACTC
TGCCACGCTGTGTACGACTGCATGCCAGGGCAAGTACATTGAGGCCGAGC
CACTTTACGAGCGTTCACAAGCTATACGAGAGAAGGTGCTGGGTCCGGAG
CATTCTATTTTGGCAACGCTCAACAACCGGGCGTGCTTTTTTGGGAGCCA
GGTGAAAACCGAACGATTCCTCTAGCAGTTCTAGATACACACCGCAATCG
GACCCTGCCTGGCGCCGTTCACCACATATCGTGGCAAGTGTGCTGAGACA
GAGCTACTCTGCAAACGGTCACGAGCCATTGAAGGGACGGTTCGGGGACT
TGAGTACCTAGATGTGTCCAGGCGGTCGACAACCGGGCGGGGGCGTTTGA
GAATATTTGAATCCACACTTGTTATTAATCCACTTTGATCGAACTATGAA
CACTCTGCCACGCTGTGTACCACTGTATGCCAGGGCAAGTACATTAAGGC
AGAGCCACTGTTCGAGCGATCACAGGGCATACAAGAGAAGGTGCTAGGTC
CGGAACATCCTGGTGTGGCTACCACACTCAACAACCGCGCCCCGGTTGTT
GAGTCTCGTAGCAAGAGTTGGGTGGTCAGGGCCTAGCGTCGGCTTCCTCG
TGCTTGCCCTGTGTACAAATCAGTGGGGTGGTGTAAGCGACTGGCCGAAG
GAGAACCAAACCCTCAAAACGAATGTGTACCCGCCGAAAGTTCCTGGAAT
TTTTCATGGCTCTCACCTGACGCTCCAACAACGGGCGGGGTTGTTGATGA
GTCAGGCGAGAGCCAAGCGATTCTTCCTTCTAGAAGATGGTTCTTGATTT
TCCTTCAAAGCTTTTCTAGATGCTTCTAGATGCCTCTAGACCTCCGTTCT
GGTTGTAGAACACGTGGGACAATGTGAGCGCGGTGTCAATGGTCTGGGAG
ACTGTTGTTTCATCCGTTAATTCATGTCCCGGTGGGAACTTCGCTACGGA
CCATGGCGGTGCCACCGTAATTTCGCTGTCACGTTGCAATTTGTAAACTG
TTCTCGAATGTTTCTTACAGAGAAAGTTCGCCGAGGCGCAGCCGTTGTTC
GAAAGAGCTCTTTTTATCAAAGAAGTTGCTCTGGGGGTGGACCACCCGAG
CAACTTCTTTGATAACCAGAGCTCTTTCGAACAACGGCTGCGCCTCAGCT
ATCTTTCCCTGTAAAAAACGGTGTAGAGCCCACTTTAGGCGGCACCGTTC
CGTAGCAACAGTTTGCAAAACTGCCATTGTGACATGATTAAATGGAGGAA
GATATAAGCCGGCTTCTAGATCATTAACTGCCATGATTTGTTCTAGAAGC
ACACGAGAAGGTCTAAATAGTTTTGACAATACTTGTTCCTATCGTGCCTT
TTACGTTTCAGGGCAAGTACGACGAAGCCGGGCCGCTGTATGATCGTTCC
CTTGCCATTTGCGAGAAAGTTTACGGGCCTGATCATCCTGCGGTGGCAAC
AGTGCTCAACAACCAGGCGGAGTTGTTGAGAGCGCAGTTGAGAGCCGCGA
GACTTTTCCAGTTGAAATGTCTTGGCGGCCTGTGGATGTTGTACGTGGCG
CTCAACAACCGTGCGGGTTGTTGAAGAGTCAGGTGAGAGCCAAACGATAT
TTCTGGAAGCATGTGTAACGACTTCGGTCGTGCATTTTTTCCTCCGCAAC
GTAATCTACGATGATCGCAATGACCACACCTTCCTCTCTCTTTTCCCTTG
TATCGCAGGGAAAGTATGACGACGCGGAACCTTTGTACGTAAGAGCTATC
GCTATCGGAGAGAAGGCGTTGGGCCCAGAGCATCCAGATCTTGCCGTGTG
GCTCAACAACCGGG
back to top

Coding sequence (CDS) from alignment at Scaffold_242:878690..881203-

>EsuBft3262_3a-0001 ID=EsuBft3262_3a-0001|Name=EsuBft3262_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=519bp|location=Sequence derived from alignment at Scaffold_242:878690..881203- (Ectocarpus subulatus male Bft15b)
ATGCTGTGTACGACTGCATGCCAGGGCAAGTACGTTGAGGCCGAGCCACT
GCTGTACGAGCGGTCACAGGCTAGAGGAGAGAAGGTGCTAGGTCTAGAGC
ATCCTGACGTACATGTCATGGCAAGTGTGCTGAGACAGAGCTACTCTTCG
AACGGTCTTGAGCCATTGGAGAAAGAACTAGGTCCGGAGCACCCTGACGT
GGCCACAACGCTCAACAACCGGGCGGGCTTGTTGGCTAATCAGGGCAAGT
ACATTGAGGCCGAGCCACTTTACGAGCGTTCACAAGCTATACGAGAGAAG
GTGCTGGGTCCGGAGCATTCTATTTTGGCAACGCTCAACAACCGGGCGTG
CTTTTTTGGGAGCCAGGGCAAGTACATTAAGGCAGAGCCACTGTTCGAGC
GATCACAGGGCATACAAGAGAAGGTGCTAGGTCCGGAACATCCTGGTGTG
GCTACCACACTCAACAACCGCGCCCCGGTTGTTGAGTCTCGTAGCAAGAG
TTGGGTGGTCAGGGCCTAG
back to top