EsuBft3262_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3262_2a-0001
Unique NameEsuBft3262_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:881508..884155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3262_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length198
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3262_2aEsuBft3262_2aEctocarpus subulatus male Bft15bgeneScaffold_242 881508..884155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3262_2a-0001EsuBft3262_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 882099..883014 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3262_2a-0001-exonagat-exon-9333Ectocarpus subulatus male Bft15bexonScaffold_242 881508..881587 +
EsuBft3262_2a-0001-exonEsuBft3262_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 882019..882532 +
EsuBft3262_2a-0001-exonagat-exon-9332Ectocarpus subulatus male Bft15bexonScaffold_242 882762..884155 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3262_2a-0001-exonagat-five_prime_utr-8116Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 881508..881587 +
EsuBft3262_2a-0001-exonagat-five_prime_utr-8117Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 882019..882098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3262_2a-0001-cdsEsuBft3262_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 882099..882532 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3262_2a-0001-exonagat-three_prime_utr-12800Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 883015..884155 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3262_2a-0001 ID=EsuBft3262_2a-0001|Name=EsuBft3262_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1988bp|location=Sequence derived from alignment at Scaffold_242:881508..884155+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGCACGACGGCGCGCGACGCTCAGCGGAAGGAGAGAGACCAAACTGCGCG
AGAAGCTCAATGAAGTCACATACTACACGTGTTTTCATCCGATGTCGGCA
ACTGGAAACCGCTGTACCGCGTGCCTTAGAGGAGAACGAGAAGCTTCTGC
CTTGCGGCACATGAGGCCCAGGACCAGCAGCCAAGTCCGGGCGTTCGTAG
ACGAGATTGGCATTGCAAACCAGTTTCCTGCCTTGGACGAGGGGGGGTTA
GGTGCGAGCACCCTCACACTGTGCAAGCGTTCTGGTTGCTTGCTGCAATT
GTACAAAAAGCACGAGCAAAGGATGAGCAAGGAGCGGAGTAAAGACCGGA
GAGCACGTAAGGCAGCGCAGACACCCCGCCATGCCACGGGTATGTGGACT
GTACCTGAACCACAAACGCACCTGAAGCGACGGTGGCTTGATAGGTACTG
CACTTCACCTGAGGCGGTGGAAGCTTTACTGGGTGCTGTGTCTATCACAG
GATGTATTTTGGACGTGTGCGGCGGGCCCACGGACGCCGTGGCGACCCGT
CTTGGACCCACGTGTGAGGTCCTCACGAACGACGTGAGCTCGGGGCGTCC
CGCGGATACCAACCTTGACGCCAGCTTGGAGTCCTTCCCGGACGACTTTT
TCGCAGCTTCCTCGGGGAAGAGGCCTGACTGGGTGGTGACGAGCCCTTCG
TACAAAAGTGCTCTTACTTTTGTCAAGGCCGCGATGTCGTTGGCTACGAG
AGGCGTGACGGTCCCTGCGCCGACCGGGGTGGTTGGCTTCAAACGAATCC
CCCATCTGTGTGCGTCTTTCTGCGGAGAGCCAAATACACACGTGTGAACA
AATTAAAGATGGGCGAATTATGGGGTGTGTGGTATACTCAGGACATTAGC
TGCGACACCACGACGAGGCTTGTCTTCTGTTCTGATTAGCATGGCTGCGA
TTTCGAGCACAGGATGGTCGGATGTGCAAGTTTAGCGTGTGAAATTGTTT
GGTTCGAGCGGGGTAATAAACAAGGCGAAACGTTCCTTCCGAGTTTCTTA
AATAAGGAACAATGGTTGTCGGAGGAGATGCCTCTAACACAACTGTGTGG
GGGATGGGGCATATTCGGATAGTGTAATGACTCGAGCACGATCGAAGATG
CCAGCGCGTGCACGAAAATTGGTTCTGAGGTGCTCCCTTTTCTATTGTCG
TGGTCTCGGCATGAAGAAGGATTTGCTTGGCACGCGTGTTCCTTGCGTAA
GAACAAACAAAAACGCGGTGTATGGGGTGGACGATGAAAGAGTGGCTGAG
TTCCTTGAAGTGAAGCAGTTGCCAGCACCTGTGACACCGCTCATGGTGAA
ACTTTAACATGTACCAATGCAAGCTAACAACAATATTTTGCTAACCGATA
CACGAAAAGCAAACCGACGCCTCAAGTTGACCGTTCATTAGTCCCAGTTC
GTGAAGGTACCGAGGTACGCGTATCACCAGGCTGCAGATTCAGCTGTTGT
CCTACATGGCAGTGCGAAGCGTATCCCTCTATTTGCTCGTACTCATGAAC
GTCATCCTCCCGGAAACTACAAGGACCTAAAACCACGACGCCGGTCCCCA
ACTTCGCTTCCCCGTTCGAACAACCAAACATACCCGGCAAAGGTTCCTCA
TCGCTGTCGCTGCTGTCACTATCTGAAACCACCTGCCCTTCCTGTGCTAA
ATAATCTTCCCGCATCTCATTTTCTTCCGTCTCTTCCTCGCGGCATGTGA
GCTTGCACTTGCACAACTCTGAGCATTGACCGAAACCTTTAGTGGTGCAA
ACGCACCTCGTGCAGTGACCGCCTCGCTTCCTCTTCCCAAATGAACACAT
GCACCTCACCGTTTCAAACCCACCCGACCAGATGGTCACCTTAGGGACCC
TGCGCATCAACATCATACAACCGCCTTCAACCTCCGTATTCTCGATGTAC
CCCATCCCGTCCCACTTGGGAATTTGAATGGGGTACCT
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protein sequence of EsuBft3262_2a-0001

>EsuBft3262_2 ID=EsuBft3262_2|Name=EsuBft3262_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=228bp
MRPRTSSQVRAFVDEIGIANQFPALDEGGLGASTLTLCKRSGCLLQLYKK
HEQRMSKERSKDRRARKAAQTPRHATGMWTVPEPQTHLKRRWLDRYCTSP
EAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADT
NLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVT
VPAPTGVVGFKRIPHLCASFCGEPNTHV
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mRNA from alignment at Scaffold_242:881508..884155+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3262_2a-0001 ID=EsuBft3262_2a-0001|Name=EsuBft3262_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2648bp|location=Sequence derived from alignment at Scaffold_242:881508..884155+ (Ectocarpus subulatus male Bft15b)
AGCACGACGGCGCGCGACGCTCAGCGGAAGGAGAGAGACCAAACTGCGCG
AGAAGCTCAATGAAGTCACATACTACACGTGTGAGTGATTTATAACGGTG
TATTGTACCTGAGGTGATTGAAATTCGTGTCGTTGGCCTGAGGCAGGCTG
CGGCCTGTTTTACGAGCCACGGTTCCGCCGCTTCGGGAGACGAACTTTGA
CGCCCAGTTGCGGAGCGTGAGGTACACAAAATGAACCAGCGGCCGGAGGG
CTCAAGCATTTGATAAGCACAGGCCTGAAAAATCGGTTATAGAGTTTGGG
ATCTGGTCTGAAGAAACCGATACAGACCATTCGGATATGGTGCCTCAAAA
CGCGGCGGAACCTCATAAAACGGCGCAGTAGCTGCGCCCGGTCGTGAGTC
CCTGCTGCCGCTACAGTCATATCTGTCTCAAAATGATGTTCTGTAGTCCT
TCCAACTAGTCTTGGTTTTGTCAACAGACTTTTTTATTTGTTGTTCACGA
AATCTTGACAGGTTTTCATCCGATGTCGGCAACTGGAAACCGCTGTACCG
CGTGCCTTAGAGGAGAACGAGAAGCTTCTGCCTTGCGGCACATGAGGCCC
AGGACCAGCAGCCAAGTCCGGGCGTTCGTAGACGAGATTGGCATTGCAAA
CCAGTTTCCTGCCTTGGACGAGGGGGGGTTAGGTGCGAGCACCCTCACAC
TGTGCAAGCGTTCTGGTTGCTTGCTGCAATTGTACAAAAAGCACGAGCAA
AGGATGAGCAAGGAGCGGAGTAAAGACCGGAGAGCACGTAAGGCAGCGCA
GACACCCCGCCATGCCACGGGTATGTGGACTGTACCTGAACCACAAACGC
ACCTGAAGCGACGGTGGCTTGATAGGTACTGCACTTCACCTGAGGCGGTG
GAAGCTTTACTGGGTGCTGTGTCTATCACAGGATGTATTTTGGACGTGTG
CGGCGGGCCCACGGACGCCGTGGCGACCCGTCTTGGACCCACGTGTGAGG
TCCTCACGAACGACGTGAGCTCGGGGTAAGAACGGTGTGTGAGGGTATCT
GAAAGTAGGCCAACAATTAAAATCTCTGCACATGCTAACTCATTTCACGT
AAGGGGAGCTATCTTTTCAAACATGCATGTGGCCATTGTATATCCAGTGG
GTGCCTTTGGTGAAAGCAAGACTATCACTTTTGGATAAACGGTATTTCTT
CCATATGAGGTGCGCGATCGCTGAATTTCTTTTGACTGCTGTTCTCGATG
CCAGGCGTCCCGCGGATACCAACCTTGACGCCAGCTTGGAGTCCTTCCCG
GACGACTTTTTCGCAGCTTCCTCGGGGAAGAGGCCTGACTGGGTGGTGAC
GAGCCCTTCGTACAAAAGTGCTCTTACTTTTGTCAAGGCCGCGATGTCGT
TGGCTACGAGAGGCGTGACGGTCCCTGCGCCGACCGGGGTGGTTGGCTTC
AAACGAATCCCCCATCTGTGTGCGTCTTTCTGCGGAGAGCCAAATACACA
CGTGTGAACAAATTAAAGATGGGCGAATTATGGGGTGTGTGGTATACTCA
GGACATTAGCTGCGACACCACGACGAGGCTTGTCTTCTGTTCTGATTAGC
ATGGCTGCGATTTCGAGCACAGGATGGTCGGATGTGCAAGTTTAGCGTGT
GAAATTGTTTGGTTCGAGCGGGGTAATAAACAAGGCGAAACGTTCCTTCC
GAGTTTCTTAAATAAGGAACAATGGTTGTCGGAGGAGATGCCTCTAACAC
AACTGTGTGGGGGATGGGGCATATTCGGATAGTGTAATGACTCGAGCACG
ATCGAAGATGCCAGCGCGTGCACGAAAATTGGTTCTGAGGTGCTCCCTTT
TCTATTGTCGTGGTCTCGGCATGAAGAAGGATTTGCTTGGCACGCGTGTT
CCTTGCGTAAGAACAAACAAAAACGCGGTGTATGGGGTGGACGATGAAAG
AGTGGCTGAGTTCCTTGAAGTGAAGCAGTTGCCAGCACCTGTGACACCGC
TCATGGTGAAACTTTAACATGTACCAATGCAAGCTAACAACAATATTTTG
CTAACCGATACACGAAAAGCAAACCGACGCCTCAAGTTGACCGTTCATTA
GTCCCAGTTCGTGAAGGTACCGAGGTACGCGTATCACCAGGCTGCAGATT
CAGCTGTTGTCCTACATGGCAGTGCGAAGCGTATCCCTCTATTTGCTCGT
ACTCATGAACGTCATCCTCCCGGAAACTACAAGGACCTAAAACCACGACG
CCGGTCCCCAACTTCGCTTCCCCGTTCGAACAACCAAACATACCCGGCAA
AGGTTCCTCATCGCTGTCGCTGCTGTCACTATCTGAAACCACCTGCCCTT
CCTGTGCTAAATAATCTTCCCGCATCTCATTTTCTTCCGTCTCTTCCTCG
CGGCATGTGAGCTTGCACTTGCACAACTCTGAGCATTGACCGAAACCTTT
AGTGGTGCAAACGCACCTCGTGCAGTGACCGCCTCGCTTCCTCTTCCCAA
ATGAACACATGCACCTCACCGTTTCAAACCCACCCGACCAGATGGTCACC
TTAGGGACCCTGCGCATCAACATCATACAACCGCCTTCAACCTCCGTATT
CTCGATGTACCCCATCCCGTCCCACTTGGGAATTTGAATGGGGTACCT
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Coding sequence (CDS) from alignment at Scaffold_242:881508..884155+

>EsuBft3262_2a-0001 ID=EsuBft3262_2a-0001|Name=EsuBft3262_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=687bp|location=Sequence derived from alignment at Scaffold_242:881508..884155+ (Ectocarpus subulatus male Bft15b)
ATGAGGCCCAGGACCAGCAGCCAAGTCCGGGCGTTCGTAGACGAGATTGG
CATTGCAAACCAGTTTCCTGCCTTGGACGAGGGGGGGTTAGGTGCGAGCA
CCCTCACACTGTGCAAGCGTTCTGGTTGCTTGCTGCAATTGTACAAAAAG
CACGAGCAAAGGATGAGCAAGGAGCGGAGTAAAGACCGGAGAGCACGTAA
GGCAGCGCAGACACCCCGCCATGCCACGGGTATGTGGACTGTACCTGAAC
CACAAACGCACCTGAAGCGACGGTGGCTTGATAGGTACTGCACTTCACCT
GAGGCGGTGGAAGCTTTACTGGGTGCTGTGTCTATCACAGGATGTATTTT
GGACGTGTGCGGCGGGCCCACGGACGCCGTGGCGACCCGTCTTGGACCCA
CGTGTGAGGTCCTCACGAACGACGTGAGCTCGGGGCGTCCCGCGGATACC
AACCTTGACGCCAGCTTGGAGTCCTTCCCGGACGACTTTTTCGCAGCTTC
CTCGGGGAAGAGGCCTGACTGGGTGGTGACGAGCCCTTCGTACAAAAGTG
CTCTTACTTTTGTCAAGGCCGCGATGTCGTTGGCTACGAGAGGCGTGACG
GTCCCTGCGCCGACCGGGGTGGTTGGCTTCAAACGAATCCCCCATCTGTG
TGCGTCTTTCTGCGGAGAGCCAAATACACACGTGTGA
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