EsuBft3261_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3261_3a-0001
Unique NameEsuBft3261_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_103contigScaffold_103:27624..28041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog103372.F4WU88
ProteomeIdEsuBft3261_3
Protein domainsPTHR13476
Protein domainsIPR015418
Ownerapollo_admin@sb-roscoff.fr
NoteScaffold_omatin modification-related protein meaf6 os:danio rerio gn:meaf6 pe:2 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length418
Hectar predicted targeting categoryother localisation
Evalue2.23e-07
EggNOG OGsKOG3856@1|root,KOG3856@2759|Eukaryota,39U1C@33154|Opisthokonta,3BEQC@33208|Metazoa,3CVKX@33213|Bilateria,41ZHD@6656|Arthropoda,3SMK4@50557|Insecta,46GKZ@7399|Hymenoptera
Ec32 ortholog descriptionEaf6 NuA4 complex protein
Ec32 orthologEc-26_004380.1
Date last modified2016-07-26
Date creation2016-06-14
Preferred nameMEAF6
KEGG koko:K11344
GOsGO:0000123,GO:0000775,GO:0000776,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009966,GO:0009987,GO:0010646,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0023051,GO:0031248,GO:0031974,GO:0031981,GO:0032991,GO:0035267,GO:0036211,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0043968,GO:0043981,GO:0043982,GO:0043983,GO:0044154,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051276,GO:0051726,GO:0065007,GO:0070013,GO:0070775,GO:0070776,GO:0071704,GO:0071840,GO:0098687,GO:1901564,GO:1901796,GO:1902493,GO:1902494,GO:1902531,GO:1902562,GO:1990234
DescriptionHistone acetyltransferase subunit NuA4
COG categoryS
BRITEko00000,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0043968
GO0005813
GO0005737
GO0070776
GO0044154
GO0043981
GO0035267
GO0043982
GO0043983
GO0043984
GO0005730
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3261_3aEsuBft3261_3aEctocarpus subulatus male Bft15bgeneScaffold_103 27624..28041 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3261_3a-0001-exonEsuBft3261_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_103 27624..28041 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3261_3a-0001-exonagat-five_prime_utr-8115Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_103 27624..27702 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3261_3a-0001-cdsEsuBft3261_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_103 27703..28041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3261_3a-0001EsuBft3261_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_103 27703..28041 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3261_3a-0001 ID=EsuBft3261_3a-0001|Name=EsuBft3261_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=418bp|location=Sequence derived from alignment at Scaffold_103:27624..28041+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTCCTGTTACTCACTGTCATCACTGGCACCACACTAGTCGTGGGCCTC
GATCGGCCCTAAGGGACGCAGCAGAATAAATGGCAAAAGAGGCGGCGGCA
AAGGGCTCTGCAGCCTCGGTGGACGTCCGACCCTCGGAGACGCCCAAGGA
CCTGAAGAAGAGGGTAAGGGGTCTGGACAAGTCGCTCACCAGCGTGCACG
AGCGCTTGGTGCAGACCGAGAAGCAGATCTTCGACCTAGAGCGTAGCTAT
CTCGAGGAGACCAGGCTCTACGGAAACGTGCTCCAGGGCTGGGATGCGTA
CCTCGACACCAAGGGGAAGGGAGTAGCAGCAGGCGGGAAGGGCGAGGCGG
CGGCTGGGGGACGAGGAGGGGTCAACATGCGAGAGGTAGCTTCTGAAGAC
GGGGAGGAAGGTATGTAG
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protein sequence of EsuBft3261_3a-0001

>EsuBft3261_3 ID=EsuBft3261_3|Name=EsuBft3261_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=112bp
MAKEAAAKGSAASVDVRPSETPKDLKKRVRGLDKSLTSVHERLVQTEKQI
FDLERSYLEETRLYGNVLQGWDAYLDTKGKGVAAGGKGEAAAGGRGGVNM
REVASEDGEEGM
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mRNA from alignment at Scaffold_103:27624..28041+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3261_3a-0001 ID=EsuBft3261_3a-0001|Name=EsuBft3261_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=418bp|location=Sequence derived from alignment at Scaffold_103:27624..28041+ (Ectocarpus subulatus male Bft15b)
TGCTCCTGTTACTCACTGTCATCACTGGCACCACACTAGTCGTGGGCCTC
GATCGGCCCTAAGGGACGCAGCAGAATAAATGGCAAAAGAGGCGGCGGCA
AAGGGCTCTGCAGCCTCGGTGGACGTCCGACCCTCGGAGACGCCCAAGGA
CCTGAAGAAGAGGGTAAGGGGTCTGGACAAGTCGCTCACCAGCGTGCACG
AGCGCTTGGTGCAGACCGAGAAGCAGATCTTCGACCTAGAGCGTAGCTAT
CTCGAGGAGACCAGGCTCTACGGAAACGTGCTCCAGGGCTGGGATGCGTA
CCTCGACACCAAGGGGAAGGGAGTAGCAGCAGGCGGGAAGGGCGAGGCGG
CGGCTGGGGGACGAGGAGGGGTCAACATGCGAGAGGTAGCTTCTGAAGAC
GGGGAGGAAGGTATGTAG
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Coding sequence (CDS) from alignment at Scaffold_103:27624..28041+

>EsuBft3261_3a-0001 ID=EsuBft3261_3a-0001|Name=EsuBft3261_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=339bp|location=Sequence derived from alignment at Scaffold_103:27624..28041+ (Ectocarpus subulatus male Bft15b)
ATGGCAAAAGAGGCGGCGGCAAAGGGCTCTGCAGCCTCGGTGGACGTCCG
ACCCTCGGAGACGCCCAAGGACCTGAAGAAGAGGGTAAGGGGTCTGGACA
AGTCGCTCACCAGCGTGCACGAGCGCTTGGTGCAGACCGAGAAGCAGATC
TTCGACCTAGAGCGTAGCTATCTCGAGGAGACCAGGCTCTACGGAAACGT
GCTCCAGGGCTGGGATGCGTACCTCGACACCAAGGGGAAGGGAGTAGCAG
CAGGCGGGAAGGGCGAGGCGGCGGCTGGGGGACGAGGAGGGGTCAACATG
CGAGAGGTAGCTTCTGAAGACGGGGAGGAAGGTATGTAG
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