EsuBft321_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft321_8a-0001
Unique NameEsuBft321_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_235contigScaffold_235:104329..109610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
StatusManually annotated
Seed ortholog2880.D7G3V2
ProteomeIdEsuBft321_8
Protein domainsPTHR24063
Protein domainsIPR003663
Protein domainsIPR005828
Protein domainsG3DSA
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsIPR020846
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Noteplastidic glucose transporter 4 os:arabidopsis thaliana gn:at5g16150 pe:1 sv:2 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1219
Hectar predicted targeting categoryother localisation
Evalue1.18e-186
EggNOG OGsKOG0254@1|root,KOG0254@2759|Eukaryota
Date last modified2016-09-23
Date creation2016-06-14
KEGG koko:K08150,ko:K20286
KEGG TC2.A.1.1.25,2.A.1.1.62,2.A.1.1.63,2.A.1.1.66,2.A.1.8
GOsGO:0003674,GO:0005215,GO:0005351,GO:0005355,GO:0005402,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0008643,GO:0008645,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015144,GO:0015145,GO:0015149,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015672,GO:0015749,GO:0022804,GO:0022857,GO:0022890,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0031984,GO:0034219,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046323,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0097708,GO:0098655,GO:0098660,GO:0098662,GO:0098791,GO:1902600,GO:1904659
DescriptionSolute carrier family 2, facilitated glucose transporter member
Descriptionglucose import
COG categoryU
BRITEko00000,ko02000,ko04131
NoteGroisillier A., annotator
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0044281
GO0015149
GO0031982
GO0015519
GO0005887
GO0005975
GO0043229
GO0055085
GO0008645
GO0005737
GO0008643
TCDB2.A.1.1..
GO0015753
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft321_8aEsuBft321_8aEctocarpus subulatus male Bft15bgeneScaffold_235 104329..109610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_8a-0001EsuBft321_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_235 104608..109579 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_8a-0001-exonagat-exon-90338Ectocarpus subulatus male Bft15bexonScaffold_235 104329..105153 -
EsuBft321_8a-0001-exonagat-exon-90337Ectocarpus subulatus male Bft15bexonScaffold_235 107161..107346 -
EsuBft321_8a-0001-exonEsuBft321_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_235 108242..108313 -
EsuBft321_8a-0001-exonagat-exon-90339Ectocarpus subulatus male Bft15bexonScaffold_235 108658..108711 -
EsuBft321_8a-0001-exonagat-exon-90336Ectocarpus subulatus male Bft15bexonScaffold_235 109529..109610 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_8a-0001-exonagat-three_prime_utr-12654Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_235 104329..104607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_8a-0001-cdsEsuBft321_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_235 104608..105153 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_8a-0001-exonagat-five_prime_utr-8031Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_235 109580..109610 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft321_8a-0001 ID=EsuBft321_8a-0001|Name=EsuBft321_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1219bp|location=Sequence derived from alignment at Scaffold_235:104329..109610- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGACGACGAGATTGGCCGCGAGGTAGATGGCATGGGGGGGAACAAGGGCG
AGGAGTACAAGGGCAACGTGTCGTGGGCTGAGGTGTTCGCGTACCGGAGG
CCCGTGATGATCGGAGTATTGCTGATGCTGATTCAGGCGTTCACGGGAAT
CAACACGGTCGTCTTCTACTCGACGACCATCTTCGAGCTGGCAGGCGTCG
ACAACACGGTTTTGGCGACCGTTTCCGTGGGACTGACCCTCGTCGTGATG
ACCTCCGTGTCCGGGAGCCTGGTCGACAAGGCCGGGCGGAGAAGCCTCAT
GCTGATAGGCACGCTCGTCATGGCCCTCGCCCTGGCCATCCTGAGCGGCT
CGCTGCTTTGGCTCAACGCAACGCCTCGGGCGCAGGGATGTCTGGCGGTG
GCTGCGACTCTCCTCTTTATCTCGGGTTTCTCCCTCGGCCAGGGATCCGT
CTGCTGGATCCTGCTCACGGAGATCGTCCCGTCCAGGATCCGCGCACAGG
CGTTCTCCATCTTCACGGCCATCAACTGGCTATCGAACCTCTTCATCGGC
CTCTTCACCCTCTCGGCGATAGACGCCATGGGAGAGTGGTTGCTCCCGTC
GTCGGGAGGCGGGTCGTCGTCGCCGTCCGCGAGGGACCAGCAGAAGGTCG
GCGTCGCCGGGCTGTACGCCCTCTTCTGCGTCCTGAGCGTGCTGGCGGTG
GCATTTATCTACTTCTTCGTGCGCGAGACGATGGGGAAGTCTCTCGAAGA
GCTCGAGGAAGGAGGAGGCGGTGGTGGGTTGGCAGGCGGGGGGAGCGCGG
ACCGGCTTGCGTTTGACATCGGGGGAGCACGCGAAGGGCTTGGCGATGAC
AGCGATTCCACGAACGCCCTGTTGCAGCTGTCCGAGCACGGTGATGCCGA
TGATGAGGACGGAGAGGGTGCATGCCGAGTATTGATATAGTGTAGTGCTT
GCGCGGGAATGTGCAACGTGCTTTATCTCATGATTGCGGTATTTTTTGTT
TTTTTACCCGTGCCGTGGGTGATAGATCGATCAATGAACAATAGTTAGTG
GTGTGCGTTTTAGGGATTGTGCCGGTGACGGGGGTCGTTGTAGGAGGCGA
CGACAACTCTGGACCGCTCTTGTCCGGAAGGAGGAGAAGTACAGCGTACC
CGGAGATAACCTACAAGAAGTCGGTTGTTTACCCAGGACCTTGGGAAGAA
CGCTTGCCGAAGAACATTC
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protein sequence of EsuBft321_8a-0001

>EsuBft321_8 ID=EsuBft321_8|Name=EsuBft321_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=302bp
MGGNKGEEYKGNVSWAEVFAYRRPVMIGVLLMLIQAFTGINTVVFYSTTI
FELAGVDNTVLATVSVGLTLVVMTSVSGSLVDKAGRRSLMLIGTLVMALA
LAILSGSLLWLNATPRAQGCLAVAATLLFISGFSLGQGSVCWILLTEIVP
SRIRAQAFSIFTAINWLSNLFIGLFTLSAIDAMGEWLLPSSGGGSSSPSA
RDQQKVGVAGLYALFCVLSVLAVAFIYFFVRETMGKSLEELEEGGGGGGL
AGGGSADRLAFDIGGAREGLGDDSDSTNALLQLSEHGDADDEDGEGACRV
LI
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mRNA from alignment at Scaffold_235:104329..109610-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft321_8a-0001 ID=EsuBft321_8a-0001|Name=EsuBft321_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5282bp|location=Sequence derived from alignment at Scaffold_235:104329..109610- (Ectocarpus subulatus male Bft15b)
CGACGACGAGATTGGCCGCGAGGTAGATGGCATGGGGGGGAACAAGGGCG
AGGAGTACAAGGGCAACGTGTCGTGGGCTGAGGTACGTCGGGTAAAAAAG
CGAGCTAGGATTGGGATTGGCGAAGCCGCTCGTTTGTCCATTCGGTGGTT
GGATTGTGCGGCTGCCTGCTTCTCTTCAGTTTTCTGAATGAGCCCGACGA
AAGGTGGACGAACCAACCACAACGACCATTATCACTATTTACCACTTTTC
ACTGCCACCACCATCATGACTTGCTCCTGCAGATCATGATCTCACTTTCG
GCTATCGCGGCGTAATTTCAACCTCGACCTTACTGCTGCCATGTCAATCG
ACCGGGGCGATATGCACGGAGCAAGCAGAAGGACATACCTCCCGTGAAGC
GGGAGCGCGAGCAGAGACCGTTTGTTGGTGTATTCCTCTGACACATGCTC
TTTGAGTGTTATCATCTCATCCCGTATACCGTGCCCCCCCCCCCCCCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCCCCCCCATGA
ACGATCGGTTCGTGCCTCTGGTATGTGTGTCACGCCATCTGTTTCGCGCG
TCAGACTACGGTATATGTGGACGCATGGTTTCACAGAGAGAAGGGCCCGC
GGGAGTTTTTTTCCCCCACGGTCAATTTAGAATAGAAACGTGACCCGCCT
CGAAGTATGCGCGCTCTACCTAGCCATTTGTGGAGGCAAACATTGAATGA
CCCCCCCTTCCTCCCCCCCCCGCCTGTTGTAAATGCTTTGACGCCGAAGG
TGTTCGCGTACCGGAGGCCCGTGATGATCGGAGTATTGCTGATGCTGATT
CAGGTACGCCTTTCAGACACCAAGGTGTTACCATGGTTGCCACCAAACAC
CTGGAAATGCAACGCTATCACCCGTTCACCCCGTATGCTGTCATTCGGTG
ATCACAGCAGCTGACGATTTGGCGCACGCACAAGGTTGGGTCAGAGGGGG
AAAGACCCCGGGACCAAGTTGACCACCCCTAAGGTTGACACCAATAGTGG
CCACACTGCGCGCGGTTGCTCGCTTTACCCTGCCGGGGTAGTGCACGATA
TGGGGCAAAATCAATCTGTTGTCGCGTACAGCATGCCGCGTTTCCTTGTT
ACGTTTTCACCACCCTCACGCTGCACGCATCACGCACGCACACTCAGGCG
TTCACGGGAATCAACACGGTCGTCTTCTACTCGACGACCATCTTCGAGCT
GGCAGGCGTCGACAACACGGTAAGAGAACGGAAACGAGGACCTGTACAGC
AGTAGTCATCGGAAAAGTTCCGGTGTGTTTTTTCTTATGGTTCAGCGCGC
GACGGCTTGCTTGGTTTGGGTCTGAAGAACGGGAGGGCTGAACGTGCCAA
GAAGCAAAGTAGACAAGTATAGAGTTGGCTTAGGGTAAGGAATAAGGTTT
AAGGTTATGGCCCGAATCGCGATTGGGGTCGGGCGATATACCGCAATCAG
GGTTAGAGTCGAGAGCAACCAACCTTTCCAGAACGTGTCTAGAGCATGCC
CTGGTGCAATACATTCCGTGTCTAGTGAGAAACTGCTTTTCAAGGTGGCT
TCGGTCAGCTTCTTCTCGATGATGACGAATATTGGGTGTTCTCTGCGCCG
CGGCTCTACGTGCTAGCCGAGCACACGCGTAGGACTTGTATGACGCGAGA
GTGCTTGCGGGGCGGTCCAAACCTCGAACGGGTGTTCGTTTTGGCTTCAG
CAGCCCTCTCCCTTCTCGTGGCGCCCGATATCGCGAACTCTCGACCCAGG
ACAGCACGGCTTCGCCGCATCCCCGCGATGACGACTCTGCGCAGTCCGCA
CGCCGTCAGCCAGTTCGACGTTTTTCAATGAACTCGGTCCTTTTTTTTTT
TGCTTTGGCGTGACGGCGATAAGACACGAATCTCATCATTACTGCTTGAG
TTTCCCGGCAGTCGACGTGTGTGACACGGCGGACTGAGGTTTCTCTTCGT
CCGAGAACAAGGCGGGCTTTTTTTTCGACAGCGTGGCGTGCCGTTGATAC
TGAACACATAATTCGACCCATGAACGGTTTGTGTTATCGCCGTCGCCACC
ACCGCCGTCCTAACGTGCGGGGGCCAACTCGCACTGCCACAAAAAAATAT
ATATATATGTGCAGGTTTTGGCGACCGTTTCCGTGGGACTGACCCTCGTC
GTGATGACCTCCGTGTCCGGGAGCCTGGTCGACAAGGCCGGGCGGAGAAG
CCTCATGCTGATAGGCACGCTCGTCATGGCCCTCGCCCTGGCCATCCTGA
GCGGCTCGCTGCTTTGGCTCAACGCAACGCCTCGGGCGCAGGGATGTCTG
GTGAGCCACTGCTGTTGTCGACGTCGTTTTTCACGTTCGAAATGTTTTTT
TCATAGGCACGGCAATGTAGTACGATTAGTTGTTGTTTCTGTCGTGACTT
CAAAGTTGTGGTGTTGGCCTCTACTACCAAGCGATTCCGCATTCCGATGA
AAAACCGTGTGAGCTACTGTCGCCTGCTCATGGTGCCGCATGGGTTGGGA
TACTCGACTGCTGACCCTCATTTCTTTGCTCGGCTACGTATTGAGCGCGG
GGTCATTCCTCCTGTGCGTCCAGCGTCATACTTGAAGGCGGTCTTTTGCT
TCCGCTATGAAGGGCATGTGGGATATGGGGAAGGGACGCTAGCGAACAGG
GTTAATACTTTCGTTAGACCCTGTTGAACAACTCGAAGACCTACACCTTT
TCCCATCGCACCCTTATGTGCGTTCACGGGAAAGTGCGCCTGTTTCTTTC
GTCCCCTCTCGCTTTCCGGCTAGACATTTACTCGCCGCCACGCTTCGCTC
CGCCCCCCTCGCCCCTCCTAGTCTGCCCTTGATCATGCCCTCCTCTCCTT
TTTGCCGCGATTGCGATAATCGCTCTCTTCTGTATTTCTGAGCGTTTTCT
GTCGTTCCGTCTCCTTTCAGAACGTGTTTTCCTCTGTCTCTTTTGGTCTG
CATTTGATAGTATCACCCCCCCCTTTCCCCCCCTCTCTCGTCTCTTCGCG
ACATTCCTTCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTACGCAGCTGTCATCCGTACGCAAGGAAGT
AGGCACAAGATGCCAAACACCCTTAACAGGATGCAGCGCACCCTTCATGC
GACTCGCCGAATACCTAACGGTACCNGGGTTTTCGTCGCTTGGCAGCGAT
GTTGTATAACAAGCCGATCACTTCGTGAGCTCGGCAACCAGGTTACCGCT
TCATTTCCCTTCTTTGTTTCTTTTGCAGTAACCACAATGGTGGTCGAGTA
GATCATGTTGTGCGGAGTCGAGAACCCTCACTCCGCGCAAGGGGGATAAT
CGCACCACGTTGTGTCAAATTGGTCAAAGCACCCTCGAGGCAGTTACACA
GTGCTTACAACTGTCTCCGGAAGTAAAAGCACCAGAAAATAAATTTAGTC
ATACGCAGCTGTCATCCGTACGCAAGGAAGTAGGCACAAGATGCCAAACA
CCCTTAACAGGATGCAGCGCACCCTTCATGCGACTCGCCGAATACCTAAC
GGTACCTCGCGCTTGGTGATGTGAGAGGCTGGTCCGGTGAGAACCCGGCG
TACTCCGTCCCAGCTGTAGGGCTGCGAGGTCAATGGTCTAACGAATACGG
CATGCACGACTATGAGTATGAGTATGAGAACACCCCCCCTCTCCCCTTCC
ATTCCTCTAGGCTGCTGGGTTGATTTACGTTGTGCTCCATCCCTGTAAGT
TAACCTGCTCTTGATCATTCTCTGCTTCTCTTCCTGCCTGCCCCCTCGTC
GCGACACTCATTCCCTTCTTATTGGTCGGTCTACTACATCTACATGACCC
CTTACAGGCGGTGGCTGCGACTCTCCTCTTTATCTCGGGTTTCTCCCTCG
GCCAGGGATCCGTCTGCTGGATCCTGCTCACGGAGATCGTCCCGTCCAGG
ATCCGCGCACAGGCGTTCTCCATCTTCACGGCCATCAACTGGCTATCGAA
CCTCTTCATCGGCCTCTTCACCCTCTCGGCGATAGACGCCATGGGAGAGT
GGTTGCTCCCGTCGTCGGGAGGCGGGTCGTCGTCGCCGTCCGCGAGGGAC
CAGCAGAAGGTCGGCGTCGCCGGGCTGTACGCCCTCTTCTGCGTCCTGAG
CGTGCTGGCGGTGGCATTTATCTACTTCTTCGTGCGCGAGACGATGGGGA
AGTCTCTCGAAGAGCTCGAGGAAGGAGGAGGCGGTGGTGGGTTGGCAGGC
GGGGGGAGCGCGGACCGGCTTGCGTTTGACATCGGGGGAGCACGCGAAGG
GCTTGGCGATGACAGCGATTCCACGAACGCCCTGTTGCAGCTGTCCGAGC
ACGGTGATGCCGATGATGAGGACGGAGAGGGTGCATGCCGAGTATTGATA
TAGTGTAGTGCTTGCGCGGGAATGTGCAACGTGCTTTATCTCATGATTGC
GGTATTTTTTGTTTTTTTACCCGTGCCGTGGGTGATAGATCGATCAATGA
ACAATAGTTAGTGGTGTGCGTTTTAGGGATTGTGCCGGTGACGGGGGTCG
TTGTAGGAGGCGACGACAACTCTGGACCGCTCTTGTCCGGAAGGAGGAGA
AGTACAGCGTACCCGGAGATAACCTACAAGAAGTCGGTTGTTTACCCAGG
ACCTTGGGAAGAACGCTTGCCGAAGAACATTC
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Coding sequence (CDS) from alignment at Scaffold_235:104329..109610-

>EsuBft321_8a-0001 ID=EsuBft321_8a-0001|Name=EsuBft321_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=909bp|location=Sequence derived from alignment at Scaffold_235:104329..109610- (Ectocarpus subulatus male Bft15b)
ATGGGGGGGAACAAGGGCGAGGAGTACAAGGGCAACGTGTCGTGGGCTGA
GGTGTTCGCGTACCGGAGGCCCGTGATGATCGGAGTATTGCTGATGCTGA
TTCAGGCGTTCACGGGAATCAACACGGTCGTCTTCTACTCGACGACCATC
TTCGAGCTGGCAGGCGTCGACAACACGGTTTTGGCGACCGTTTCCGTGGG
ACTGACCCTCGTCGTGATGACCTCCGTGTCCGGGAGCCTGGTCGACAAGG
CCGGGCGGAGAAGCCTCATGCTGATAGGCACGCTCGTCATGGCCCTCGCC
CTGGCCATCCTGAGCGGCTCGCTGCTTTGGCTCAACGCAACGCCTCGGGC
GCAGGGATGTCTGGCGGTGGCTGCGACTCTCCTCTTTATCTCGGGTTTCT
CCCTCGGCCAGGGATCCGTCTGCTGGATCCTGCTCACGGAGATCGTCCCG
TCCAGGATCCGCGCACAGGCGTTCTCCATCTTCACGGCCATCAACTGGCT
ATCGAACCTCTTCATCGGCCTCTTCACCCTCTCGGCGATAGACGCCATGG
GAGAGTGGTTGCTCCCGTCGTCGGGAGGCGGGTCGTCGTCGCCGTCCGCG
AGGGACCAGCAGAAGGTCGGCGTCGCCGGGCTGTACGCCCTCTTCTGCGT
CCTGAGCGTGCTGGCGGTGGCATTTATCTACTTCTTCGTGCGCGAGACGA
TGGGGAAGTCTCTCGAAGAGCTCGAGGAAGGAGGAGGCGGTGGTGGGTTG
GCAGGCGGGGGGAGCGCGGACCGGCTTGCGTTTGACATCGGGGGAGCACG
CGAAGGGCTTGGCGATGACAGCGATTCCACGAACGCCCTGTTGCAGCTGT
CCGAGCACGGTGATGCCGATGATGAGGACGGAGAGGGTGCATGCCGAGTA
TTGATATAG
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