EsuBft3199_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3199_2a-0001
Unique Name	EsuBft3199_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_210	contig	Scaffold_210:89410..91055 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft3199_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	164
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3199_2a	EsuBft3199_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_210 89410..91055 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3199_2a-0001-exon	EsuBft3199_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_210 89410..91055 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3199_2a-0001-exon	agat-three_prime_utr-12593	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_210 89410..89522 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3199_2a-0001-cds	EsuBft3199_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_210 89523..90932 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3199_2a-0001-exon	agat-five_prime_utr-7991	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_210 90933..91055 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3199_2a-0001	EsuBft3199_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_210 89523..90932 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_210:89410..91055-
coding sequence from alignment at Scaffold_210:89410..91055-

spliced messenger RNA

>EsuBft3199_2a-0001 ID=EsuBft3199_2a-0001|Name=EsuBft3199_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1646bp|location=Sequence derived from alignment at Scaffold_210:89410..91055- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCGAAAGTGATTGAGAGAGCCCGTAAGAGAGTTGCGGACAAAGTATCGGG
TCCAGTGTACGCAGGGCCAGGCCCGGGGGAATTGTCGATCAACAATTGTG
CAGTAAGGCTTCAGCAAAAAGTCATGAGTGTTCTTCGTACTCTCGATTCT
GGAGTGATCGCGCTTGAACCGGACGTATTTCTAAACGGGTATTGGGCAAC
ACAACCAGACGTTCACACCGGTCGGCGCAGGGAGTTGCTTACCGATCTAC
TACACGAACACCTGTTGACGCACAACCAAATCACTTCGGCTGACACCGTA
CAAGTGTATCGCATAACAGGAGAAGTAGTAGACACCCCACGCGACAGTGT
AACGGCTACCCACTGGCTGCGTCTCATTGTGCGTGAACATGCCTTGACGG
GGGGTGCGGTTGAGTACGCTAATGCCGCGTTGCAGGCTATGATGCTCGGT
ACGCCCGAATCCATGCCCACCGCCGCAGCCCGCGTTTTAGCAGCCTTTCG
CGCCACATTGGTAGATCCTGACCGGCCCCACATCACTGAACAGCGGTTTT
TCTGGCGGTATATCTCGGCAGTGCAGATGATAGCCTTGTTCGAACGCGTC
ACCGAGGTACTCTTGCCGAATCCGGTTGACAGAGCCGGGGTCAACGGGCT
GCTACATGAACGCATACATTCTGTCAGCACCACCCTACAGAAGTTGCGTC
AAGAGTCGCACCACCCCATGGGGGACCACATGAGCCACCGTGGCAAGGTA
GCTGAGAGCCTGTTCCGCGAGTTTGTAGCCGTTTTGAGCGCGCGTTCGAA
GCCATACATGACCCCGACGACGCCCCGCAAACCGACCCGCGCGGGCGGGC
AGGATCGCCTCTGTGCGGCTAACCCTACGCCTCGCCACCTGTCGATGCCC
GAATATCGACAGCTGTTCACCGCAGATGGCTTGGCGTCGTACAACTCGAG
TATACCACTCACCGTGTCGGGAGGCAGCGCGCCCCTCCGGCCGCCGCCTC
CCACTTGGCTAAACTCTGTTGCCGCCGTAGCGCCGCCCGTTGCTGCCCCA
GAGTCCCCTTCGTCGGTTGCCGTGGCAGCGTTCCAGAACCACAAGGCCAG
CACGCCCGGCCAGCACGGTGTTCCTTTCACCGCCAAAGCACCGTCATCGA
CGGCCGCACCAGCGACAACGCCACCAACGGCCGCCACCACGGCCACCGCT
GTGACACACCCGCCGGTGACTGCGCCCCGGTCCGTGATCCTCGACCACCT
CATGGAACATGGGATCTGCTACGCCCACGTGTTCTCGGCGTGCCGTCGAC
AAGGCCGTTTCAGATGGCGACACGACCTACTGCCATCGTCATTCTACAAG
GACGTACCACGCCCGGCGAGCCGTGCGGCTACTCACACGCGCCGCGTCGT
AGCCGCGCTGACGCCCGCCCATTACGACACGGCCGTCGCCATGGGACTCG
AGCTTCACGTGTCGGGCGAGCATCAGGTGGCGATGATGGCAGGGGACATC
CCGCTGGGACCTCGGAGTGACGCCGAGATGTGAAACGAGGACCCGGGTCT
CGCCAACCCGGGGCACCTTGGGTCCGCGAAGGCGGAGCACTGCACCGGCG
ATCAGTTGTGGATACGTGGTGAGATCGGACGAGTTGGGCGTAGACG

protein sequence of EsuBft3199_2a-0001

>EsuBft3199_2 ID=EsuBft3199_2|Name=EsuBft3199_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=469bp
MSVLRTLDSGVIALEPDVFLNGYWATQPDVHTGRRRELLTDLLHEHLLTH
NQITSADTVQVYRITGEVVDTPRDSVTATHWLRLIVREHALTGGAVEYAN
AALQAMMLGTPESMPTAAARVLAAFRATLVDPDRPHITEQRFFWRYISAV
QMIALFERVTEVLLPNPVDRAGVNGLLHERIHSVSTTLQKLRQESHHPMG
DHMSHRGKVAESLFREFVAVLSARSKPYMTPTTPRKPTRAGGQDRLCAAN
PTPRHLSMPEYRQLFTADGLASYNSSIPLTVSGGSAPLRPPPPTWLNSVA
AVAPPVAAPESPSSVAVAAFQNHKASTPGQHGVPFTAKAPSSTAAPATTP
PTAATTATAVTHPPVTAPRSVILDHLMEHGICYAHVFSACRRQGRFRWRH
DLLPSSFYKDVPRPASRAATHTRRVVAALTPAHYDTAVAMGLELHVSGEH
QVAMMAGDIPLGPRSDAEM

mRNA from alignment at Scaffold_210:89410..91055-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3199_2a-0001 ID=EsuBft3199_2a-0001|Name=EsuBft3199_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1646bp|location=Sequence derived from alignment at Scaffold_210:89410..91055- (Ectocarpus subulatus male Bft15b)
TCGAAAGTGATTGAGAGAGCCCGTAAGAGAGTTGCGGACAAAGTATCGGG
TCCAGTGTACGCAGGGCCAGGCCCGGGGGAATTGTCGATCAACAATTGTG
CAGTAAGGCTTCAGCAAAAAGTCATGAGTGTTCTTCGTACTCTCGATTCT
GGAGTGATCGCGCTTGAACCGGACGTATTTCTAAACGGGTATTGGGCAAC
ACAACCAGACGTTCACACCGGTCGGCGCAGGGAGTTGCTTACCGATCTAC
TACACGAACACCTGTTGACGCACAACCAAATCACTTCGGCTGACACCGTA
CAAGTGTATCGCATAACAGGAGAAGTAGTAGACACCCCACGCGACAGTGT
AACGGCTACCCACTGGCTGCGTCTCATTGTGCGTGAACATGCCTTGACGG
GGGGTGCGGTTGAGTACGCTAATGCCGCGTTGCAGGCTATGATGCTCGGT
ACGCCCGAATCCATGCCCACCGCCGCAGCCCGCGTTTTAGCAGCCTTTCG
CGCCACATTGGTAGATCCTGACCGGCCCCACATCACTGAACAGCGGTTTT
TCTGGCGGTATATCTCGGCAGTGCAGATGATAGCCTTGTTCGAACGCGTC
ACCGAGGTACTCTTGCCGAATCCGGTTGACAGAGCCGGGGTCAACGGGCT
GCTACATGAACGCATACATTCTGTCAGCACCACCCTACAGAAGTTGCGTC
AAGAGTCGCACCACCCCATGGGGGACCACATGAGCCACCGTGGCAAGGTA
GCTGAGAGCCTGTTCCGCGAGTTTGTAGCCGTTTTGAGCGCGCGTTCGAA
GCCATACATGACCCCGACGACGCCCCGCAAACCGACCCGCGCGGGCGGGC
AGGATCGCCTCTGTGCGGCTAACCCTACGCCTCGCCACCTGTCGATGCCC
GAATATCGACAGCTGTTCACCGCAGATGGCTTGGCGTCGTACAACTCGAG
TATACCACTCACCGTGTCGGGAGGCAGCGCGCCCCTCCGGCCGCCGCCTC
CCACTTGGCTAAACTCTGTTGCCGCCGTAGCGCCGCCCGTTGCTGCCCCA
GAGTCCCCTTCGTCGGTTGCCGTGGCAGCGTTCCAGAACCACAAGGCCAG
CACGCCCGGCCAGCACGGTGTTCCTTTCACCGCCAAAGCACCGTCATCGA
CGGCCGCACCAGCGACAACGCCACCAACGGCCGCCACCACGGCCACCGCT
GTGACACACCCGCCGGTGACTGCGCCCCGGTCCGTGATCCTCGACCACCT
CATGGAACATGGGATCTGCTACGCCCACGTGTTCTCGGCGTGCCGTCGAC
AAGGCCGTTTCAGATGGCGACACGACCTACTGCCATCGTCATTCTACAAG
GACGTACCACGCCCGGCGAGCCGTGCGGCTACTCACACGCGCCGCGTCGT
AGCCGCGCTGACGCCCGCCCATTACGACACGGCCGTCGCCATGGGACTCG
AGCTTCACGTGTCGGGCGAGCATCAGGTGGCGATGATGGCAGGGGACATC
CCGCTGGGACCTCGGAGTGACGCCGAGATGTGAAACGAGGACCCGGGTCT
CGCCAACCCGGGGCACCTTGGGTCCGCGAAGGCGGAGCACTGCACCGGCG
ATCAGTTGTGGATACGTGGTGAGATCGGACGAGTTGGGCGTAGACG

Coding sequence (CDS) from alignment at Scaffold_210:89410..91055-

>EsuBft3199_2a-0001 ID=EsuBft3199_2a-0001|Name=EsuBft3199_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1410bp|location=Sequence derived from alignment at Scaffold_210:89410..91055- (Ectocarpus subulatus male Bft15b)
ATGAGTGTTCTTCGTACTCTCGATTCTGGAGTGATCGCGCTTGAACCGGA
CGTATTTCTAAACGGGTATTGGGCAACACAACCAGACGTTCACACCGGTC
GGCGCAGGGAGTTGCTTACCGATCTACTACACGAACACCTGTTGACGCAC
AACCAAATCACTTCGGCTGACACCGTACAAGTGTATCGCATAACAGGAGA
AGTAGTAGACACCCCACGCGACAGTGTAACGGCTACCCACTGGCTGCGTC
TCATTGTGCGTGAACATGCCTTGACGGGGGGTGCGGTTGAGTACGCTAAT
GCCGCGTTGCAGGCTATGATGCTCGGTACGCCCGAATCCATGCCCACCGC
CGCAGCCCGCGTTTTAGCAGCCTTTCGCGCCACATTGGTAGATCCTGACC
GGCCCCACATCACTGAACAGCGGTTTTTCTGGCGGTATATCTCGGCAGTG
CAGATGATAGCCTTGTTCGAACGCGTCACCGAGGTACTCTTGCCGAATCC
GGTTGACAGAGCCGGGGTCAACGGGCTGCTACATGAACGCATACATTCTG
TCAGCACCACCCTACAGAAGTTGCGTCAAGAGTCGCACCACCCCATGGGG
GACCACATGAGCCACCGTGGCAAGGTAGCTGAGAGCCTGTTCCGCGAGTT
TGTAGCCGTTTTGAGCGCGCGTTCGAAGCCATACATGACCCCGACGACGC
CCCGCAAACCGACCCGCGCGGGCGGGCAGGATCGCCTCTGTGCGGCTAAC
CCTACGCCTCGCCACCTGTCGATGCCCGAATATCGACAGCTGTTCACCGC
AGATGGCTTGGCGTCGTACAACTCGAGTATACCACTCACCGTGTCGGGAG
GCAGCGCGCCCCTCCGGCCGCCGCCTCCCACTTGGCTAAACTCTGTTGCC
GCCGTAGCGCCGCCCGTTGCTGCCCCAGAGTCCCCTTCGTCGGTTGCCGT
GGCAGCGTTCCAGAACCACAAGGCCAGCACGCCCGGCCAGCACGGTGTTC
CTTTCACCGCCAAAGCACCGTCATCGACGGCCGCACCAGCGACAACGCCA
CCAACGGCCGCCACCACGGCCACCGCTGTGACACACCCGCCGGTGACTGC
GCCCCGGTCCGTGATCCTCGACCACCTCATGGAACATGGGATCTGCTACG
CCCACGTGTTCTCGGCGTGCCGTCGACAAGGCCGTTTCAGATGGCGACAC
GACCTACTGCCATCGTCATTCTACAAGGACGTACCACGCCCGGCGAGCCG
TGCGGCTACTCACACGCGCCGCGTCGTAGCCGCGCTGACGCCCGCCCATT
ACGACACGGCCGTCGCCATGGGACTCGAGCTTCACGTGTCGGGCGAGCAT
CAGGTGGCGATGATGGCAGGGGACATCCCGCTGGGACCTCGGAGTGACGC
CGAGATGTGA