EsuBft3191_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3191_3a-0001
Unique Name	EsuBft3191_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_437	contig	Scaffold_437:39823..41847 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005092035.1
ProteomeId	EsuBft3191_3
Protein domains	PTHR19446
Protein domains	SSF56672
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	line-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	2025
Evalue	1.27e-89
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3D94V@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Ribonuclease H protein
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0006259
EC	3.1
GO	0004518
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3191_3a	EsuBft3191_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_437 39823..41847 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3191_3a-0001-exon	EsuBft3191_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_437 39823..41847 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3191_3a-0001-cds	EsuBft3191_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_437 39823..41847 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3191_3a-0001	EsuBft3191_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_437 39823..41847 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_437:39823..41847-
coding sequence from alignment at Scaffold_437:39823..41847-

spliced messenger RNA

>EsuBft3191_3a-0001 ID=EsuBft3191_3a-0001|Name=EsuBft3191_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2025bp|location=Sequence derived from alignment at Scaffold_437:39823..41847- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTACCCGACGCAGCGCGGACGACCTTGGGGGAGGAACCGCGGAGA
CGCCGCACGCAGGAGTGGTGTGAGACCCCAGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCTCCAGCGGTGGGCGAGATTCTTCAGCACCCTA
CTCAACACCAAATCCCCCACCCTGAACCCACACATAATCGGACGAGTGAC
GCAGCGGCCAGCGACACGTGACACTCAACGGTTGGGAGATGTGCCAGAAC
TCGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTGGAAGGCACCC
GGCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATGACGACGAACC
CTTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTGTGGAACGGAG
GAGATATTCCGCGAGAGTGGAAGGATGCAACCATCAAGGTGCTGTACAAG
AAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGATTTCGCTACTATC
TCACGTAGGCAAGGTCCAGATCAAGATCATCACCAACCGTCTAAGCGCCT
TCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCGGATTTCGACCC
GGGCGATCCACCGTCGACATGCTGTGCGTCGTGCGCCGCCTCCAGGAGCT
GGGGCGGAGAAAGAAAATACCGTTCTACATGTGCTTTGTCGACTTGAACA
AGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGTTGGCCAGG
GCCGGGATTCCCGCGAGGCTGCTCAAAGCCATCCGCCAATTCCACGATGG
AATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTATCGGACTGGTTCT
TCGTGACACAGGGCGTGCGACAAGGATGTGTGCTATCCCCACTGCTGTTC
AACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGA
GGATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGACGG
AAGGGGGGGGGGGGGAGGAGACACCCCTTGACCGAGTACGGAGGGCAGTA
TGGGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGCAGA
AGGACTGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTTCG
GGCTAACGGTGTCGGAGAAGAAGACGGAGACGCTCCTGATGCGCGCAAAG
GACAAGCCGACTACAACATCACAGCCCGCCCCGCCTCCACCACTGACCAT
CGAAGCCGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGGTACCTCG
GTGGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTACAGG
AGCAGAGGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGA
CAGACCGCAAGCGCCATTCCGACTCAAGATCCGCCTGCTCCAGGCGGAGG
CGATGGAGGCACTGCTGTACGGCTGCATGACATGGTCACCACTCAGCGGC
CACTATCAGACGCTGCGGTCGATACACCACCGACTGCTCCTTCGAGTTAT
CGGGTACAAGCGCAAGAAAGACACCTACCGGCAGCTCTCTTGCGCCCAGA
CGCTGAAGAAGGTCGAATGCCAGAGCGTTGAAGCCACGATCTGGCAACGA
CGCCTACTGTTTGCGGGAGCATTGGCAACGCAGCCGGACGGGCGACTCCC
GAAACGACTGATGTTTGGCGAAATGACAGGGGCGGAGAAGCGACGTAGGA
GGGGACAGGAACAGAACTGGCCGAAGTGTGTGCTCGGCGACCTGAAGGGG
CCGACCACAGATCCACGAAAACCGATCCATGTTGCTTCGGATTCCCGGTA
CCGAAAGACACGACACCGACGTTAA

protein sequence of EsuBft3191_3a-0001

>EsuBft3191_3 ID=EsuBft3191_3|Name=EsuBft3191_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=674bp
MLYPTQRGRPWGRNRGDAARRSGVRPQXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRWARFFSTL
LNTKSPTLNPHIIGRVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAP
GHDSLPAELLKIDDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYK
KGDRSNCNNYRGISLLSHVGKVQIKIITNRLSAFCEANNILPEEQCGFRP
GRSTVDMLCVVRRLQELGRRKKIPFYMCFVDLNKAYDSVDREMLWKVLAR
AGIPARLLKAIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLF
NIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEGGGGEETPLDRVRRAV
WGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAK
DKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYR
SRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSG
HYQTLRSIHHRLLLRVIGYKRKKDTYRQLSCAQTLKKVECQSVEATIWQR
RLLFAGALATQPDGRLPKRLMFGEMTGAEKRRRRGQEQNWPKCVLGDLKG
PTTDPRKPIHVASDSRYRKTRHRR

mRNA from alignment at Scaffold_437:39823..41847-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3191_3a-0001 ID=EsuBft3191_3a-0001|Name=EsuBft3191_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2025bp|location=Sequence derived from alignment at Scaffold_437:39823..41847- (Ectocarpus subulatus male Bft15b)
ATGCTCTACCCGACGCAGCGCGGACGACCTTGGGGGAGGAACCGCGGAGA
CGCCGCACGCAGGAGTGGTGTGAGACCCCAGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCTCCAGCGGTGGGCGAGATTCTTCAGCACCCTA
CTCAACACCAAATCCCCCACCCTGAACCCACACATAATCGGACGAGTGAC
GCAGCGGCCAGCGACACGTGACACTCAACGGTTGGGAGATGTGCCAGAAC
TCGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTGGAAGGCACCC
GGCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATGACGACGAACC
CTTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTGTGGAACGGAG
GAGATATTCCGCGAGAGTGGAAGGATGCAACCATCAAGGTGCTGTACAAG
AAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGATTTCGCTACTATC
TCACGTAGGCAAGGTCCAGATCAAGATCATCACCAACCGTCTAAGCGCCT
TCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCGGATTTCGACCC
GGGCGATCCACCGTCGACATGCTGTGCGTCGTGCGCCGCCTCCAGGAGCT
GGGGCGGAGAAAGAAAATACCGTTCTACATGTGCTTTGTCGACTTGAACA
AGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGTTGGCCAGG
GCCGGGATTCCCGCGAGGCTGCTCAAAGCCATCCGCCAATTCCACGATGG
AATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTATCGGACTGGTTCT
TCGTGACACAGGGCGTGCGACAAGGATGTGTGCTATCCCCACTGCTGTTC
AACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGA
GGATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGACGG
AAGGGGGGGGGGGGGAGGAGACACCCCTTGACCGAGTACGGAGGGCAGTA
TGGGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGCAGA
AGGACTGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTTCG
GGCTAACGGTGTCGGAGAAGAAGACGGAGACGCTCCTGATGCGCGCAAAG
GACAAGCCGACTACAACATCACAGCCCGCCCCGCCTCCACCACTGACCAT
CGAAGCCGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGGTACCTCG
GTGGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTACAGG
AGCAGAGGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGA
CAGACCGCAAGCGCCATTCCGACTCAAGATCCGCCTGCTCCAGGCGGAGG
CGATGGAGGCACTGCTGTACGGCTGCATGACATGGTCACCACTCAGCGGC
CACTATCAGACGCTGCGGTCGATACACCACCGACTGCTCCTTCGAGTTAT
CGGGTACAAGCGCAAGAAAGACACCTACCGGCAGCTCTCTTGCGCCCAGA
CGCTGAAGAAGGTCGAATGCCAGAGCGTTGAAGCCACGATCTGGCAACGA
CGCCTACTGTTTGCGGGAGCATTGGCAACGCAGCCGGACGGGCGACTCCC
GAAACGACTGATGTTTGGCGAAATGACAGGGGCGGAGAAGCGACGTAGGA
GGGGACAGGAACAGAACTGGCCGAAGTGTGTGCTCGGCGACCTGAAGGGG
CCGACCACAGATCCACGAAAACCGATCCATGTTGCTTCGGATTCCCGGTA
CCGAAAGACACGACACCGACGTTAA

Coding sequence (CDS) from alignment at Scaffold_437:39823..41847-

>EsuBft3191_3a-0001 ID=EsuBft3191_3a-0001|Name=EsuBft3191_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2025bp|location=Sequence derived from alignment at Scaffold_437:39823..41847- (Ectocarpus subulatus male Bft15b)
ATGCTCTACCCGACGCAGCGCGGACGACCTTGGGGGAGGAACCGCGGAGA
CGCCGCACGCAGGAGTGGTGTGAGACCCCAGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCTCCAGCGGTGGGCGAGATTCTTCAGCACCCTA
CTCAACACCAAATCCCCCACCCTGAACCCACACATAATCGGACGAGTGAC
GCAGCGGCCAGCGACACGTGACACTCAACGGTTGGGAGATGTGCCAGAAC
TCGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTGGAAGGCACCC
GGCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATGACGACGAACC
CTTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTGTGGAACGGAG
GAGATATTCCGCGAGAGTGGAAGGATGCAACCATCAAGGTGCTGTACAAG
AAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGATTTCGCTACTATC
TCACGTAGGCAAGGTCCAGATCAAGATCATCACCAACCGTCTAAGCGCCT
TCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCGGATTTCGACCC
GGGCGATCCACCGTCGACATGCTGTGCGTCGTGCGCCGCCTCCAGGAGCT
GGGGCGGAGAAAGAAAATACCGTTCTACATGTGCTTTGTCGACTTGAACA
AGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGTTGGCCAGG
GCCGGGATTCCCGCGAGGCTGCTCAAAGCCATCCGCCAATTCCACGATGG
AATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTATCGGACTGGTTCT
TCGTGACACAGGGCGTGCGACAAGGATGTGTGCTATCCCCACTGCTGTTC
AACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGA
GGATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAGGGGAAGACGG
AAGGGGGGGGGGGGGAGGAGACACCCCTTGACCGAGTACGGAGGGCAGTA
TGGGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGCAGA
AGGACTGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTTCG
GGCTAACGGTGTCGGAGAAGAAGACGGAGACGCTCCTGATGCGCGCAAAG
GACAAGCCGACTACAACATCACAGCCCGCCCCGCCTCCACCACTGACCAT
CGAAGCCGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGGTACCTCG
GTGGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTACAGG
AGCAGAGGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGA
CAGACCGCAAGCGCCATTCCGACTCAAGATCCGCCTGCTCCAGGCGGAGG
CGATGGAGGCACTGCTGTACGGCTGCATGACATGGTCACCACTCAGCGGC
CACTATCAGACGCTGCGGTCGATACACCACCGACTGCTCCTTCGAGTTAT
CGGGTACAAGCGCAAGAAAGACACCTACCGGCAGCTCTCTTGCGCCCAGA
CGCTGAAGAAGGTCGAATGCCAGAGCGTTGAAGCCACGATCTGGCAACGA
CGCCTACTGTTTGCGGGAGCATTGGCAACGCAGCCGGACGGGCGACTCCC
GAAACGACTGATGTTTGGCGAAATGACAGGGGCGGAGAAGCGACGTAGGA
GGGGACAGGAACAGAACTGGCCGAAGTGTGTGCTCGGCGACCTGAAGGGG
CCGACCACAGATCCACGAAAACCGATCCATGTTGCTTCGGATTCCCGGTA
CCGAAAGACACGACACCGACGTTAA