EsuBft3186_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3186_3a-0001
Unique NameEsuBft3186_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_463contigScaffold_463:513257..515113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3186_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length150
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3186_3aEsuBft3186_3aEctocarpus subulatus male Bft15bgeneScaffold_463 513257..515113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3186_3a-0001EsuBft3186_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_463 513280..513774 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3186_3a-0001-exonagat-exon-87902Ectocarpus subulatus male Bft15bexonScaffold_463 513257..513345 +
EsuBft3186_3a-0001-exonagat-exon-87903Ectocarpus subulatus male Bft15bexonScaffold_463 513505..513559 +
EsuBft3186_3a-0001-exonEsuBft3186_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_463 513758..515113 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3186_3a-0001-exonagat-five_prime_utr-7968Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_463 513257..513279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3186_3a-0001-cdsEsuBft3186_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_463 513280..513345 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3186_3a-0001-exonagat-three_prime_utr-12551Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 513775..515113 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3186_3a-0001 ID=EsuBft3186_3a-0001|Name=EsuBft3186_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1500bp|location=Sequence derived from alignment at Scaffold_463:513257..515113+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGCACCCGGCCTTCCCTCCCTGATGATCTCCAGCACCGCCGCCGCCGCA
GCCACCGACCCCCGGTCATCTTGGCGGCCGACCACGGCGCGGCGGCGGCA
GCGGCGACAGCAGCCGCGGCAGCAGCAGCAGCGGGGCCACGAGACGGCGA
CAAAAGCTTGACCACCGAAGACCCGTACGTGGTGGCCTCCCTCAAGAGAG
CCATCGTCGAGCTGTACGACACCTGCCACCGGCTTCTGTCGTTCAAGGTG
GGCGAAGCCGGGGTTGCTTGTTGCTGCTTTTTGCTCTCAAATTGCTGCAC
GATCGACGGTGCGTTATACTTGTCGAGGAGGTATGAGGCTCCGATCCGTG
AGAGGCCGTCCTAAAATACCTGGGCGGTGGTTGTTCTTCCCCCGCGTCAG
GGGGGTAGGTAGCGCTGGAACCCCCCTGTCGTACGGTACGTCCTCAAGTG
TGTTCTGTGAGTGCGTTTTAGCTTCCCCTAGGGCACGGATGACTTTGCGT
TGCTGGCCGTTCTGTTCACATTGCACCCGAGAAGTGTTTATCGGGGGCTC
GTGATGCCGGACAGCCTCCCCTGGGTTGGGAACATGCCTGAGACTGATGC
GCTGACGTTTTGCCCCATTTAGTGTAGCATCTCTTGTGTGCAGCGCTCGT
GTTACGTTGCAGCACACACCAGAGAGTGTTGTTTTGCGTGTGTTTGTTTT
GCTGATTTACTGCTGCTGCACCTGTTTTGCGACACGGCGGTGTACTTCTA
TTCTCGCTTCCACTTCCACACATCCTTGTCCATCAAACTGTACGCAGCGT
GACACAATACTTGACCTTATAGCCCTGCACAGCAGTTCGTTGGGTAACGA
CAACGTTGTCCCTGGTTGCTCATCGCTCCGGGCGATAGCTACAGCAGTAG
CTGCGCGGAGGTATCATAGGTCGACATCAGCGTACCTAGCATCCCTACTG
TAGCGGCACATGATGTGCAGCAGTGAGTTGCAGCAGGAGTAGTAGTAGGC
CCTCTATAAGGCGGGTGCCGTGTTAGGGCGGGTGAATCGGTCTGGGCGCA
TGCCCGCCTTGAGGGCCTATGAAGACAACTGCTTGAAGTGGAAAGCTAAA
ATCGACGGCGTGATAATGCACCTAACTTACTCTTTTATGTACTCACCTTT
GTCGCCCTGCTGTCCCTCATCATCATCGCTACAATCGACACGCAAGTACA
CTTTGCGGCCCATCATGCGTTCCACAGAATCCACCGAGGGTTCCCGGAGC
TCTCTGTCCATGCCTTCGGGTGCACTGCTGCTGCGATCATGCACAGCAAG
CACGGCCTACAGCACAGGAGGTTGAACATCGCAGGTGGTGGATCGGCCGC
CGAGAGATGCGGGGGGATTCAGCATTCAGCACCTAAAGTGAACTACTTAA
CCTAAACCACGCGGCGAAAGGAACCGGTCCACCCTGCTGCCTGCCGCCAT
AGGTACACGCGCACAGCGCAAACCTTGCAGCGAGGACAGCAGGCGGGAAG
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protein sequence of EsuBft3186_3a-0001

>EsuBft3186_3 ID=EsuBft3186_3|Name=EsuBft3186_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=45bp
MISSTAAAAATDPRSSWRPTTARRRQRRQQPRQQQQRGHETATKA
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mRNA from alignment at Scaffold_463:513257..515113+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3186_3a-0001 ID=EsuBft3186_3a-0001|Name=EsuBft3186_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1857bp|location=Sequence derived from alignment at Scaffold_463:513257..515113+ (Ectocarpus subulatus male Bft15b)
GTGCACCCGGCCTTCCCTCCCTGATGATCTCCAGCACCGCCGCCGCCGCA
GCCACCGACCCCCGGTCATCTTGGCGGCCGACCACGGCGGTCTCGGTCTC
GGTCTCTGGAGGAGCACCGACTATCTCCGCTGCCCCGGCACGACGGAGGT
GCAGTTCCAGTCCCATCATCCGCACCAAGGCGCCATAGTTGATCATCTGC
AAGCACATCGCCTTTCGTTTTTGCCGGGGGTGGGTGGGGGGGGGAGAGCG
GCGGCGGCAGCGGCGACAGCAGCCGCGGCAGCAGCAGCAGCGGGGCCACG
AGAGTCCGCGGGCGGAGATCGGCCTCGAGCGCGATGGCGGGCACGACGCC
GTCTTCACAGCAGCGCGAGGGTGGCAACGGGGGGGTCTCCGGCTGGGTCC
GTCCTCTTCAAGCACCCCCTGGCCCATCTCTGCAGTAGGGGAGCGAGCGG
TGGTGATGGTGACGACGTGGGCGGTGGCATGGGCTTCATGGCCAACACCA
GCGGCGACAAAAGCTTGACCACCGAAGACCCGTACGTGGTGGCCTCCCTC
AAGAGAGCCATCGTCGAGCTGTACGACACCTGCCACCGGCTTCTGTCGTT
CAAGGTGGGCGAAGCCGGGGTTGCTTGTTGCTGCTTTTTGCTCTCAAATT
GCTGCACGATCGACGGTGCGTTATACTTGTCGAGGAGGTATGAGGCTCCG
ATCCGTGAGAGGCCGTCCTAAAATACCTGGGCGGTGGTTGTTCTTCCCCC
GCGTCAGGGGGGTAGGTAGCGCTGGAACCCCCCTGTCGTACGGTACGTCC
TCAAGTGTGTTCTGTGAGTGCGTTTTAGCTTCCCCTAGGGCACGGATGAC
TTTGCGTTGCTGGCCGTTCTGTTCACATTGCACCCGAGAAGTGTTTATCG
GGGGCTCGTGATGCCGGACAGCCTCCCCTGGGTTGGGAACATGCCTGAGA
CTGATGCGCTGACGTTTTGCCCCATTTAGTGTAGCATCTCTTGTGTGCAG
CGCTCGTGTTACGTTGCAGCACACACCAGAGAGTGTTGTTTTGCGTGTGT
TTGTTTTGCTGATTTACTGCTGCTGCACCTGTTTTGCGACACGGCGGTGT
ACTTCTATTCTCGCTTCCACTTCCACACATCCTTGTCCATCAAACTGTAC
GCAGCGTGACACAATACTTGACCTTATAGCCCTGCACAGCAGTTCGTTGG
GTAACGACAACGTTGTCCCTGGTTGCTCATCGCTCCGGGCGATAGCTACA
GCAGTAGCTGCGCGGAGGTATCATAGGTCGACATCAGCGTACCTAGCATC
CCTACTGTAGCGGCACATGATGTGCAGCAGTGAGTTGCAGCAGGAGTAGT
AGTAGGCCCTCTATAAGGCGGGTGCCGTGTTAGGGCGGGTGAATCGGTCT
GGGCGCATGCCCGCCTTGAGGGCCTATGAAGACAACTGCTTGAAGTGGAA
AGCTAAAATCGACGGCGTGATAATGCACCTAACTTACTCTTTTATGTACT
CACCTTTGTCGCCCTGCTGTCCCTCATCATCATCGCTACAATCGACACGC
AAGTACACTTTGCGGCCCATCATGCGTTCCACAGAATCCACCGAGGGTTC
CCGGAGCTCTCTGTCCATGCCTTCGGGTGCACTGCTGCTGCGATCATGCA
CAGCAAGCACGGCCTACAGCACAGGAGGTTGAACATCGCAGGTGGTGGAT
CGGCCGCCGAGAGATGCGGGGGGATTCAGCATTCAGCACCTAAAGTGAAC
TACTTAACCTAAACCACGCGGCGAAAGGAACCGGTCCACCCTGCTGCCTG
CCGCCATAGGTACACGCGCACAGCGCAAACCTTGCAGCGAGGACAGCAGG
CGGGAAG
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Coding sequence (CDS) from alignment at Scaffold_463:513257..515113+

>EsuBft3186_3a-0001 ID=EsuBft3186_3a-0001|Name=EsuBft3186_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=138bp|location=Sequence derived from alignment at Scaffold_463:513257..515113+ (Ectocarpus subulatus male Bft15b)
ATGATCTCCAGCACCGCCGCCGCCGCAGCCACCGACCCCCGGTCATCTTG
GCGGCCGACCACGGCGCGGCGGCGGCAGCGGCGACAGCAGCCGCGGCAGC
AGCAGCAGCGGGGCCACGAGACGGCGACAAAAGCTTGA
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