EsuBft317_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft317_10a-0001
Unique Name	EsuBft317_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_499	contig	Scaffold_499:1374534..1378225 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft317_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	229
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft317_10a	EsuBft317_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_499 1374534..1378225 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft317_10a-0001	EsuBft317_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_499 1374994..1376515 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft317_10a-0001-exon	agat-exon-20853	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 1374534..1375123 +
EsuBft317_10a-0001-exon	agat-exon-20854	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 1376106..1377139 +
EsuBft317_10a-0001-exon	EsuBft317_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 1377315..1377360 +
EsuBft317_10a-0001-exon	agat-exon-20852	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 1377598..1378225 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft317_10a-0001-exon	agat-five_prime_utr-7962	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_499 1374534..1374993 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft317_10a-0001-cds	EsuBft317_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_499 1374994..1375123 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft317_10a-0001-exon	agat-three_prime_utr-12531	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_499 1376516..1377139 +
EsuBft317_10a-0001-exon	agat-three_prime_utr-12532	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_499 1377315..1377360 +
EsuBft317_10a-0001-exon	agat-three_prime_utr-12533	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_499 1377598..1378225 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_499:1374534..1378225+
coding sequence from alignment at Scaffold_499:1374534..1378225+

spliced messenger RNA

>EsuBft317_10a-0001 ID=EsuBft317_10a-0001|Name=EsuBft317_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2298bp|location=Sequence derived from alignment at Scaffold_499:1374534..1378225+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TATATTCAACCACTCCTGCCAGACGAATTTTGTACATAATGTTGACAAAA
GCAGTATCATAGTGACCCCCACGAGCAAAGGAACAAATCGTCGTGGCCGG
AATTTTGATTTAAGGCTTCGCTGGGAAGATATGGGCTATTACGTGCCTCA
GCCGACGAGGAGCCTCCAAATATTTCGATGATATGCAGGCTTTTCCCAAA
ACGGGGACAAGAAACATAATTACGCCGCATTTTTTTTTTTATTATCTCAG
CCGTTGTCGCAGCTCCTGCTGCACCGGTGCTGCTGTACAACCAGCTGAGT
ACCTCTGCACACGCGTCTCGTACGCAAGGAGACCCTCCACAATGGAGCCA
CTACAAAGTGTGGATCCCTACGTGGACACCCACAAACGCAACGTATCGCA
AGTTTGCGCAGTGCAGTGCAGCAACACAAAGGCTCAGATGCACGTATCAC
CTACGGCCACATGCCACGGGGCATTCGCAAGAATACCGCCTTCAAGTATG
AGACGAAGGCGGAAGCGCTCGGAGACGCGGACAACTGGACAAGTGAGCTG
GAGAAGCCCATGCGAAGGCGGAGCTTGTCGCCCAAGCACGGCACGACGCC
GAACTGCGAAGTCGCCAAGAAGTGTGCCATCCAAAAACAAGCGGAACGCG
CCAGAGCTTTGAGGGGGTTGCAGCAAGAGGCCAGAATCCTGATGCGCCTA
CGCTGCAGAAGGTTGCGTAACGCCAGACTCGGGCGCCGGGCGTTTGCGTA
CGTCAGGCGCGATCGCAAATCAGAACAGCGGAGGAGATACATGGAGCGGC
GGGTTGCAGAGTGCGACCAGGAGGATGCTTCAATGGACGCACAGGCCGTG
GCTATGTTCTCCACGCTAACGAAGGGGCAACACGTCACGCTGCTGGAGTC
TCACGAGCAGCCACCCCCGGTGACTGATGCACCCACGAGCGACATCAGCG
TGGCCGACCCTCCGGAGGTTCTCGCCGCACACGCAGCGGCCGCGGTGTGA
CCCTCAGCAAACCGGTCCATGCATGTTGGCATGTTTGCGTTCTCGGTGCA
TGAATCAACAGTGTTTTATCACCCAGTTCAGCTGGCACAAGGCCGCGCTG
CGATGATAAAAAATCTCTCTTCGGGGCAGCACGGTCGGTGTTTCCGTCTA
AAAAGTAGGTAGATTCTCTTGCAGACCCCAACATGCCGGTAACATGGCTG
TTTGTGATTCTTTCTCTAACCAACGACACCGTTACAGTGCAATGAAGCTT
CGCATGGAGTTTCGTCGACATCGCCCATAAACTGACCTAATACGGTCGAA
AAATGGTCGATTTATGACTTGCCGTCGATGGGCCAAACTGCGTTGGAGAT
AGCCTCTTTTTGCGGGACCCCAAAAATCTGTCCCAATATGTGATTTCNAT
CTCTCTTCGGGGCAGCACGGTCGGTGTTTCCGTCTAATAAGTAGGTAGCA
TGNTCCATGCATGTTGGCATGTTTGCGTTCTCGGTGCATGAATCAACAGT
GTTCTCCACCCAGTTAAGCTGGCACAAGGTCGCGCTGCGATGATAAAAAA
ATCTCTCTTCGGGGCAGCACGGTCGGTGTTTCCGTAAAAAGGGCCCGCCG
CACAGCGTTTCGTATTGACCCAAGGGAAAAAAAAAAGGGCCCGCCGCACA
GCGTTTCGTATTGACCCAAGGGCTGCCCACCATAGTGCCGGTTCGGGCCC
CACTGAACCCCACAATAGTGCCGGTTCAAACACGCACGCACACACAACAC
ACGAGAGACTCACACAACACAGAAGACAGACACAGAGGAGAGGGTACACG
TGCTGCTACAGACCCGAACAGCTCTAGTGAGGGCGGGGGTTACAGCTACA
GCGGCTGTTTGATTTCTTGCATGTCCCGTTCTTGGGTCGTTTTATTTTTT
CATCTTGTTCTGGTTACATCGAAGGAGGGTGGTGAGGAGGAGGCAGATTT
CGCTTCCTCCTTCACCAATAGGTGGTGCCAGCAGGAGCTTCGCAAAAGTG
TAACCGCCAAACATCCATGGGCTTCATGATCAGTGGTTTGCTTTCGCTGT
CGAGGAGTGATGTTGAGGTTGCACGAAATGGTTTGATCCGTGTAAGGCCA
GTGCCACGGCATTCTTGCCAACAAAATATTGGACACCTATGAGGTGCATC
CTTTGCGATATTCATGTGAAGGGTTGAAGTCAGGTTGTGCAAGTGTGCAG
TACGTGCCCTGAGGTGGGTACAGCAACAAGGTGCAGCATGTGTGTCCCGT
CCAGTTAACTTATTAAGCAACATGTGTGTGTTCGATAGGGCAGTAACC

protein sequence of EsuBft317_10a-0001

>EsuBft317_10 ID=EsuBft317_10|Name=EsuBft317_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=179bp
MPRGIRKNTAFKYETKAEALGDADNWTSELEKPMRRRSLSPKHGTTPNCE
VAKKCAIQKQAERARALRGLQQEARILMRLRCRRLRNARLGRRAFAYVRR
DRKSEQRRRYMERRVAECDQEDASMDAQAVAMFSTLTKGQHVTLLESHEQ
PPPVTDAPTSDISVADPPEVLAAHAAAAV

mRNA from alignment at Scaffold_499:1374534..1378225+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft317_10a-0001 ID=EsuBft317_10a-0001|Name=EsuBft317_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3692bp|location=Sequence derived from alignment at Scaffold_499:1374534..1378225+ (Ectocarpus subulatus male Bft15b)
TATATTCAACCACTCCTGCCAGACGAATTTTGTACATAATGTTGACAAAA
GCAGTATCATAGTGACCCCCACGAGCAAAGGAACAAATCGTCGTGGCCGG
AATTTTGATTTAAGGCTTCGCTGGGAAGATATGGGCTATTACGTGCCTCA
GCCGACGAGGAGCCTCCAAATATTTCGATGATATGCAGGCTTTTCCCAAA
ACGGGGACAAGAAACATAATTACGCCGCATTTTTTTTTTTATTATCTCAG
CCGTTGTCGCAGCTCCTGCTGCACCGGTGCTGCTGTACAACCAGCTGAGT
ACCTCTGCACACGCGTCTCGTACGCAAGGAGACCCTCCACAATGGAGCCA
CTACAAAGTGTGGATCCCTACGTGGACACCCACAAACGCAACGTATCGCA
AGTTTGCGCAGTGCAGTGCAGCAACACAAAGGCTCAGATGCACGTATCAC
CTACGGCCACATGCCACGGGGCATTCGCAAGAATACCGCCTTCAAGTATG
AGACGAAGGCGGAAGCGCTCGGAGACGCGGACAACTGGACAAGTGAGCTG
GAGAAGCCCATGCGAAGGCGGAGCTTGTCGCCCAAGCACGGTGAGTCTAC
GATTGCTGAGCGGAACTTGCTGCACGTAGCTACTGCTGCGGCAGTTGCTG
TACAGCAGTACTGCTGTACAACCGCAGCAGCAGCAAAGCGGCAGGGTGTG
TACTCCGTGGTGGGTTGAAACATGCAGCAAAGTAGCAACCAGGCGGGCGC
GTTGCTAGCACGGTGGTGACACGTGCAACAACACTAGCCGGCGTTCATGC
GTACGGTTGGTGCGTGTTTTCCATGACAAGTGTAGCTGTGTGAAAAAACG
GCAAGTTGCAGTGCAACAGCATCCATGTGTATGTATGTACTGGAGAACCT
CGACACGAATCCTGTTGTTTGAATCGGACAATCTTGAACAGTAGACGAGT
TGTACAGCATGCAGCAGTGCAGTACTACTTGTATTGATACAAAATAGTGT
AGTGTATTGTACAACCCATCTCTGATTTGTACTTCTAATAGAACACAGCA
GTGCTCAGCAGTACGCTATTAGTGTACATACAAGAAGTACAAAGTGGTTC
TACACGCCAGATCCGAACTTGTGTTTACAAACTGTCTCTATTTTATGGAA
CGCACCAGGGCATACAGCAGCAGCACGCAATTGTACAAGAACACATTGTG
TACAAGTCAGGCCCGAACTTGTACACATGCAACCCGTCTCAAAAACAAGG
TGCCCAACTCTTACAAGTCGAGTCCAGCAGCAACCGACACAAGGGCATAC
CGCACCCACAGATAAACACAAACACCAACATTGGCTTAGAGGGGCTGCCG
TATTGCAGGACGGGAGGCTGTGTGTTCTGCAAAGTACAAGGATTGACATT
CACGGGTTATTCTTCAATTCGAGTAACGGTCCTCTAGCAGGCGCTCTTTG
TTTGTTTTTACCAAGACACAGTCCTTGTATCCAAGCTTTATCGCACAGTT
TAATGAACAGCCATACTATCGCCGTATGTTCCGGTCTGTCCTCCGTTAAA
ATTACCCCCCACCGGTGTTCAGGCACGACGCCGAACTGCGAAGTCGCCAA
GAAGTGTGCCATCCAAAAACAAGCGGAACGCGCCAGAGCTTTGAGGGGGT
TGCAGCAAGAGGCCAGAATCCTGATGCGCCTACGCTGCAGAAGGTTGCGT
AACGCCAGACTCGGGCGCCGGGCGTTTGCGTACGTCAGGCGCGATCGCAA
ATCAGAACAGCGGAGGAGATACATGGAGCGGCGGGTTGCAGAGTGCGACC
AGGAGGATGCTTCAATGGACGCACAGGCCGTGGCTATGTTCTCCACGCTA
ACGAAGGGGCAACACGTCACGCTGCTGGAGTCTCACGAGCAGCCACCCCC
GGTGACTGATGCACCCACGAGCGACATCAGCGTGGCCGACCCTCCGGAGG
TTCTCGCCGCACACGCAGCGGCCGCGGTGTGACCCTCAGCAAACCGGTCC
ATGCATGTTGGCATGTTTGCGTTCTCGGTGCATGAATCAACAGTGTTTTA
TCACCCAGTTCAGCTGGCACAAGGCCGCGCTGCGATGATAAAAAATCTCT
CTTCGGGGCAGCACGGTCGGTGTTTCCGTCTAAAAAGTAGGTAGATTCTC
TTGCAGACCCCAACATGCCGGTAACATGGCTGTTTGTGATTCTTTCTCTA
ACCAACGACACCGTTACAGTGCAATGAAGCTTCGCATGGAGTTTCGTCGA
CATCGCCCATAAACTGACCTAATACGGTCGAAAAATGGTCGATTTATGAC
TTGCCGTCGATGGGCCAAACTGCGTTGGAGATAGCCTCTTTTTGCGGGAC
CCCAAAAATCTGTCCCAATATGTGATTTCNATCTCTCTTCGGGGCAGCAC
GGTCGGTGTTTCCGTCTAATAAGTAGGTAGCATGNTCCATGCATGTTGGC
ATGTTTGCGTTCTCGGTGCATGAATCAACAGTGTTCTCCACCCAGTTAAG
CTGGCACAAGGTCGCGCTGCGATGATAAAAAAATCTCTCTTCGGGGCAGC
ACGGTCGGTGTTTCCGTAAAAAGGGCCCGCCGCACAGCGTTTCGTATTGA
CCCAAGGTATATGTGTGCAAAGTCTCAGAGTCTAATTCATAAAAACGNAT
ATACCTTGGGTCAATACGAAACGCTGTGCGGCGGGCCCTTTTTCATTTAC
TTCTATGGTCGCCGGTTATTCGGGGTCCCAGGAGCCGCGCACGGACCCGA
AATCTCTAGGACCCCGGATATCCGGCGACAGGGAAAAAAAAAAGGGCCCG
CCGCACAGCGTTTCGTATTGACCCAAGGTATATGTGTGCAAAGTCTCAGA
GTCTAATTCATAAAAACGGCGTGAAGTTTTGCTGTTGAATCTTGTTATAT
CCATTTCCCTGAACCAGCTTGTAGTCTAGACCATTAATTAAGGTCGGCGG
AACAACCAACACGTACAGTAGAGGTCCCTGTTTAGTGCCGGTTGCCGGTA
TAGTGCCGGTCAAATCTCGGCGCACAGAACCCGCCCTGAATAGTGCCAGA
GCGGCACTACTCAGGGCTGCCCACCATAGTGCCGGTTCGGGCCCCACTGA
ACCCCACAATAGTGCCGGTTCAAACACGCACGCACACACAACACACGAGA
GACTCACACAACACAGAAGACAGACACAGAGGAGAGGGTACACGTGCTGC
TACAGACCCGAACAGCTCTAGTGAGGGCGGGGGTTACAGCTACAGCGGCT
GTTTGATTTCTTGCATGTCCCGTTCTTGGGTCGTTTTATTTTTTCATCTT
GTTCTGGTTACATCGAAGGAGGGTGGTGAGGAGGAGGCAGATTTCGCTTC
CTCCTTCACCAATAGGTGGTGCCAGCAGGAGCTTCGCAAAAGTGTAACCG
CCAAACATCCATGGGCTTCATGATCAGTGGTTTGCTTTCGCTGTCGAGGA
GTGATGTTGAGGTTGCACGAAATGGTTTGATCCGTGTAAGGCCAGTGCCA
CGGCATTCTTGCCAACAAAATATTGGACACCTATGAGGTGCATCCTTTGC
GATATTCATGTGAAGGGTTGAAGTCAGGTTGTGCAAGTGTGCAGTACGTG
CCCTGAGGTGGGTACAGCAACAAGGTGCAGCATGTGTGTCCCGTCCAGTT
AACTTATTAAGCAACATGTGTGTGTTCGATAGGGCAGTAACC

Coding sequence (CDS) from alignment at Scaffold_499:1374534..1378225+

>EsuBft317_10a-0001 ID=EsuBft317_10a-0001|Name=EsuBft317_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=540bp|location=Sequence derived from alignment at Scaffold_499:1374534..1378225+ (Ectocarpus subulatus male Bft15b)
ATGCCACGGGGCATTCGCAAGAATACCGCCTTCAAGTATGAGACGAAGGC
GGAAGCGCTCGGAGACGCGGACAACTGGACAAGTGAGCTGGAGAAGCCCA
TGCGAAGGCGGAGCTTGTCGCCCAAGCACGGCACGACGCCGAACTGCGAA
GTCGCCAAGAAGTGTGCCATCCAAAAACAAGCGGAACGCGCCAGAGCTTT
GAGGGGGTTGCAGCAAGAGGCCAGAATCCTGATGCGCCTACGCTGCAGAA
GGTTGCGTAACGCCAGACTCGGGCGCCGGGCGTTTGCGTACGTCAGGCGC
GATCGCAAATCAGAACAGCGGAGGAGATACATGGAGCGGCGGGTTGCAGA
GTGCGACCAGGAGGATGCTTCAATGGACGCACAGGCCGTGGCTATGTTCT
CCACGCTAACGAAGGGGCAACACGTCACGCTGCTGGAGTCTCACGAGCAG
CCACCCCCGGTGACTGATGCACCCACGAGCGACATCAGCGTGGCCGACCC
TCCGGAGGTTCTCGCCGCACACGCAGCGGCCGCGGTGTGA