EsuBft3179_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3179_2a-0001
Unique NameEsuBft3179_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_417contigScaffold_417:205544..207765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3179_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length58
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3179_2aEsuBft3179_2aEctocarpus subulatus male Bft15bgeneScaffold_417 205544..207765 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3179_2a-0001-exonagat-exon-26493Ectocarpus subulatus male Bft15bexonScaffold_417 205544..205899 -
EsuBft3179_2a-0001-exonEsuBft3179_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_417 207541..207765 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3179_2a-0001-exonagat-three_prime_utr-12530Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_417 205544..205764 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3179_2a-0001-cdsEsuBft3179_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_417 205765..205899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3179_2a-0001EsuBft3179_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_417 205765..207765 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3179_2a-0001 ID=EsuBft3179_2a-0001|Name=EsuBft3179_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=581bp|location=Sequence derived from alignment at Scaffold_417:205544..207765- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGAAGAATTCAGCACTCTCTTCCCTCTGTGTACACACGAACGAGC
GCTATCCACTATTAGTAGGGCAAGAGCGGGAGCAAGAGAAAAACTCACTG
TGCAAGAAAAGCTCGCTTACGCCGGGATTCGAACCCCTGACCTGACCTCT
AGACGGGTTCGAGGTTTCCAACTAGACCACCGGGGCGACCGGTCAGAGAT
AACCTCGCCCTCGGCGAGGGACGAGGTGGCCATATCTCGGCGAGTGCAGA
GGTACAAGCTCGCATTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAACA
AGATCGACCTCGGACCAGTCAACGCCAATGATATGGGGATGGAGTGTAGA
CGCATCGTAGAACGCGTTTTCGTTTGAAGTTGACGTCTTGTTTGAGAGTA
GATGTGACAGATTTGCGTAGAATAGGGTAAGATGTTATCATGAACGGAGA
TGAAAGGGCTTTTCCAACACGGAGATGTAGCATGGATCAAAGCATTTGTT
GGATTTCAGCTTTTACAAGCGGACATCAACGCAGTAGTATTTTAGCAAGC
TTACGAACGCATATAGGATACCATCAGGATT
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protein sequence of EsuBft3179_2a-0001

>EsuBft3179_2 ID=EsuBft3179_2|Name=EsuBft3179_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=119bp
MREEFSTLFPLCTHERALSTISRARAGAREKLTVQEKLAYAGIRTPDLTS
RRVRGFQLDHRGDRSEITSPSARDEVAISRRVQRYKLALRGRQDAENRRT
RSTSDQSTPMIWGWSVDAS
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mRNA from alignment at Scaffold_417:205544..207765-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3179_2a-0001 ID=EsuBft3179_2a-0001|Name=EsuBft3179_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2222bp|location=Sequence derived from alignment at Scaffold_417:205544..207765- (Ectocarpus subulatus male Bft15b)
ATGCGAGAAGAATTCAGCACTCTCTTCCCTCTGTGTACACACGAACGAGC
GCTATCCACTATTAGTAGGGCAAGAGCGGGAGCAAGAGAAAAACTCACTG
TGCAAGAAAAGCTCGCTTACGCCGGGATTCGAACCCCTGACCTGACCTCT
AGACGGGTTCGAGGTTTCCAACTAGACCACCGGGGCGACCGGTCAGAGAT
AACCTCGCCCTCGGCGAGGGACGAGGTTATGCACGACGTATTTTTTCGGC
GGCATCAGATGGACCGCCGGTAGATGGGAGAAATCTATCCATACCAACAC
CCAGTTACAGCTGCAGCAGCAGACCGCTCGCTACTTCCGCTGTCTGGGCG
TCGCTACTTCTGTATTCACTGTGATGCGTGGTGCATGCAAAGAACGGCCC
GCAGGACATAGAAAGGGGGGTACGCGGCAGAGACAATAGGGTAACCCATT
ATCGTACATTCTGTCGGGACTCCTGGTGCTCGGCATAAAAAATTTCCTTA
AACCGGAGAGTTTCCTTAACGCGAGTGTCCTCAAAGTGGGGTCGACTGCA
GTTCCATAAGGGTGCAACCACCGACAACACACCCGACAAACCAACTACCC
AACACCTTCCTTCGGTACATTCCCAGCAATACATGCAGATAGGTGCACAA
AACGGTTACCACACTGTCTTGTTGACCGTGTTTCCCACGGGGGAGATGTC
GCTGTATGCTGCTCGGGAAATCATGGAAACACAGGTAGCCTTCACTGACG
CTATGGATTCATTGCTAATCCGTCTTAGAATCTTTTCATAGATGGAGATG
GATTCGTTGTGTAATATGAAGAAAATGAAAAATAATAGAACTACTTCAGT
TATCCCTCCAGGCAACCTAGAGAACCAAGATTTCATCGAAACACCGGCTC
GCCTCGAAAAACATTCTTCGTTTTCATAATGTCGTGCTGCTTCGTATGCG
TTCTTCGAGGTGCGCCAATACGCGGCAATCCACACTGAGTGTCGATGACG
AGCACGCAGTTTCTGAGTAGCACCCACCAGACGAGCTATGTATAAAATAC
AGCGAGGAGAGAGAGGGAGATCGCACAAACACGCGCGCACGCACACAAAC
ACGCGAATATATATGTCGAGCTACTGCAGCACAGCGGTACGTCGTACCCA
CACCCAGGGATCCATCCATGCTTTTATATCATGTGCACGCCCGTCCTCCC
CCCAGAACACTTCAAGTACCGTGATGATGCTCTGGCACCTCCGCGTTGAT
ATTTTTCGCTCGCTTGACTCCATTTATCGGTAGGATCTTTGGAGTGAACA
CCCCACCCAAAGCAATCGCCATCAGTCATCCATCCCGACGCGTCGGTATG
CTTACAACCCGCATGGCAGAATACATGCACGGTGATTTCTTTGCTGCCCC
GGTTACGGTCTCTGCTCTGGCGTATCTTTTCCTTCATTTATTGATTCATT
GAGTGAGGTGCAACATTTTGAAAGCGTGTGGCCCGCAGATGAATGGGCTT
CATCGTGTATTGGTGGGCTTTGCCCGCGATATTAGACTCCTAAAACTCTG
TCCCGTTATATTTAATTTTTGCCGTACGTTCTTTGCGCTGTTGCCACGGC
ACCCTGCACGCAGCCGGCCATGACTTGAAAAATAAAGTGTAAATGGTCGT
TTGCGGTTGGTTAATTTTCTGGTGCAAACATGAAGCACAGCAGGTCGAGC
ATTACGTTTGTATTCGATTGGCATGCACATCGTAGAGACAAATTTTATGA
AATGAAAACTGCTGTCGCCACATCGTCCGTGTTGCACCTCGGTAGTTGTT
TGTTGTTATTGTTTTGTTCACATCTTCAAGGAATTACTTCTTCAGATCGT
TTCGGTGGCTACACAGGTGGCCATATCTCGGCGAGTGCAGAGGTACAAGC
TCGCATTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAACAAGATCGACC
TCGGACCAGTCAACGCCAATGATATGGGGATGGAGTGTAGACGCATCGTA
GAACGCGTTTTCGTTTGAAGTTGACGTCTTGTTTGAGAGTAGATGTGACA
GATTTGCGTAGAATAGGGTAAGATGTTATCATGAACGGAGATGAAAGGGC
TTTTCCAACACGGAGATGTAGCATGGATCAAAGCATTTGTTGGATTTCAG
CTTTTACAAGCGGACATCAACGCAGTAGTATTTTAGCAAGCTTACGAACG
CATATAGGATACCATCAGGATT
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Coding sequence (CDS) from alignment at Scaffold_417:205544..207765-

>EsuBft3179_2a-0001 ID=EsuBft3179_2a-0001|Name=EsuBft3179_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=360bp|location=Sequence derived from alignment at Scaffold_417:205544..207765- (Ectocarpus subulatus male Bft15b)
ATGCGAGAAGAATTCAGCACTCTCTTCCCTCTGTGTACACACGAACGAGC
GCTATCCACTATTAGTAGGGCAAGAGCGGGAGCAAGAGAAAAACTCACTG
TGCAAGAAAAGCTCGCTTACGCCGGGATTCGAACCCCTGACCTGACCTCT
AGACGGGTTCGAGGTTTCCAACTAGACCACCGGGGCGACCGGTCAGAGAT
AACCTCGCCCTCGGCGAGGGACGAGGTGGCCATATCTCGGCGAGTGCAGA
GGTACAAGCTCGCATTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAACA
AGATCGACCTCGGACCAGTCAACGCCAATGATATGGGGATGGAGTGTAGA
CGCATCGTAG
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