EsuBft3167_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3167_3a-0001
Unique NameEsuBft3167_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:53115..55366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3167_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length126
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3167_3aEsuBft3167_3aEctocarpus subulatus male Bft15bgeneScaffold_347 53115..55366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3167_3a-0001EsuBft3167_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 53115..54091 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3167_3a-0001-exonagat-exon-31776Ectocarpus subulatus male Bft15bexonScaffold_347 53115..53188 +
EsuBft3167_3a-0001-exonagat-exon-31775Ectocarpus subulatus male Bft15bexonScaffold_347 53453..53522 +
EsuBft3167_3a-0001-exonagat-exon-31774Ectocarpus subulatus male Bft15bexonScaffold_347 53951..54364 +
EsuBft3167_3a-0001-exonEsuBft3167_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 54663..55366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3167_3a-0001-cdsEsuBft3167_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 53115..53188 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3167_3a-0001-exonagat-three_prime_utr-12497Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 54092..54364 +
EsuBft3167_3a-0001-exonagat-three_prime_utr-12498Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 54663..55366 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3167_3a-0001 ID=EsuBft3167_3a-0001|Name=EsuBft3167_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1262bp|location=Sequence derived from alignment at Scaffold_347:53115..55366+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATGGATGCGGAGCGCTGTTTTCGGCGAGGACACCCCATCACCTGA
CAGGGTTATTACGAGGCTGTTACGGCGGGCGGCGAGGAGAAAGAGGACAG
CGATGATGCAGGAACACATCGCGAGATGCATCCAGGGCGCAAAAGATGAC
GACCCCTCCGTACAAAATCTTAGGGTTTACGTGCGGAGCCAATTCGCGAG
CTGTCTTCGCGGAGACCTAGACGGCGTCAAGAAAAAGGTGTGGGAGAGGG
TGGACCCCCTCTTCTTCGAGGGACGTAGATGCTGACTCGGCCCGCTTTGC
AAGAAGGTCAAAGATCTTCCCCCGACCACGCGCTTGATTACCGACGCTTG
GAACGGCCACGTTGACGAAGTCGCCGCCTTAGAATACCGCAAGGCTGATA
CTAAGGCGGCGACTGCGTTCACCTTGACCCGCTTTGCTGGCTGGGAGGGT
AGACTCCGGGCGTGGATAAGTCAGCCGGAAGTGTTGGAGGCAGGGTTGCG
AAACCACCAGGAAGAGAAGGCGTTGCACTACGTATCCTGCATCATCAATC
ACGTGGAGGAGTTGTACAAGGTGTACGTGAAAGAGCGCAAGGATTCCGTG
GCCGTGGAGCTCTCTTACCCGAGTGAAAGGTATCAGATCACAAAACCGCG
CGGGCAAGTCCTGTACTACATTGCCGGGTGGGCGGCCAGCAATGCTTGGG
CGCATCAAAGAAGACACAACCTTTCCCAGGATTGGGTACGTGTCGTCCAA
CACAACACTCGCCGGTCCAGTGGGGAGGCGATATGTACTGATTCTTTGCT
GAGAGATTTCGTAGCAAAAGTCGATTCGAAGAACGATATGAAGAACGGTC
CGGGACTTCTTTACCCTACGATGGAGTGGGTAGAGTTCGTGTATGCTGTG
GAGAGGGGCATATTCCATTTTTTGAAAAACCCCATCTTCCTTGCTGCTTG
CGTCGGAGACTTGCCAGCCGAGATTGTCAAAGTAGTAAGCGAGGCGGAGG
TTCTCAAGGAAGTGTGGGGAAACTGCTGCCCCCTGGTCCTCCTGCCATCG
ATCCTAGTGTATCTCAGGAGATGTTTCTTTTCGTTGTCGGGAAAATCCTC
AACGTGCGAATGGGTGACTTCGCGAAGAGTGTAAGGGAGAATACTTCCCT
CAAGTTCTCGAAGACCGCGCCTGCTTTGCGGCAACAGCTGAACGCGCGTG
TCGGGCCTAATGGAGGGGCGGGGGCCGGTAGTGGCGAAGCAACGGGGGTT
GCACAGGGGGGC
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protein sequence of EsuBft3167_3a-0001

>EsuBft3167_3 ID=EsuBft3167_3|Name=EsuBft3167_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=94bp
MEWMRSAVFGEDTPSPDRVITRLLRRAARRKRTAMMQEHIARCIQGAKDD
DPSVQNLRVYVRSQFASCLRGDLDGVKKKVWERVDPLFFEGRRC
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mRNA from alignment at Scaffold_347:53115..55366+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3167_3a-0001 ID=EsuBft3167_3a-0001|Name=EsuBft3167_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2252bp|location=Sequence derived from alignment at Scaffold_347:53115..55366+ (Ectocarpus subulatus male Bft15b)
ATGGAATGGATGCGGAGCGCTGTTTTCGGCGAGGACACCCCATCACCTGA
CAGGGTTATTACGAGGCTGTTACGGTGAGAATTTACCGCGGGAAATGTTG
ATGGCGTCCATTGTCGTGTTGTAGTCCATGACACTTTTGCAATATTTTTC
TCTCCGTCTTCGTTCTCTTGAATTGCCTGGCTGGTGTGGTGACTTCGCGC
CTAGTTCCCCCACTTGTCTCAATGCCCGTAACTTACATGGTTGCGGTCAT
CGATATTGAGTCGTCTCCGCGACAGCAGTTATCGTCATATAGATCGCGCC
GTTCGTAACGCTTTGGCATTCTCGCACACTGATGACAGGCGGGCGGCGAG
GAGAAAGAGGACAGCGATGATGCAGGAACACATCGCGAGATGCATCCAGG
GCGCAAAAGTAAGCTGAAGCCTGGGTTACCTAAGCGTCGAACGAGCCTCA
GCAGTGACTACAAGAGTGCATTTTCTGTGTGATGTTTTCATACGTTGTTC
TGCGGGGTGTTGCCCCGTCGGTGATGACCGCTTGATGTATCGCCCTGTTC
ATACTCCGACGTCATTTCCGCAAAGTTGAACTCTCCGGATGCTCCCGAAG
AAAACAGAGTGATGTTCGGGTGAGATCGCCATGTAGATCGTAGTCTGCTC
GCGCAATTTATGCTAAACACGGAGTATCAGCCAATGTTTCCAGTTGGCGT
GAACTCGCAGAGTCGTATCAGCTTTCGTCGTTTAGTTGAACGACTGATCA
ACATAGCAACGAGGGCCTATTGGTTACAAGCTGTTCACCCGCGCATTTTG
TGATTGTCCACGGCCGTCTGGATCACCATGCGGCAGGATGACGACCCCTC
CGTACAAAATCTTAGGGTTTACGTGCGGAGCCAATTCGCGAGCTGTCTTC
GCGGAGACCTAGACGGCGTCAAGAAAAAGGTGTGGGAGAGGGTGGACCCC
CTCTTCTTCGAGGGACGTAGATGCTGACTCGGCCCGCTTTGCAAGAAGGT
CAAAGATCTTCCCCCGACCACGCGCTTGATTACCGACGCTTGGAACGGCC
ACGTTGACGAAGTCGCCGCCTTAGAATACCGCAAGGCTGATACTAAGGCG
GCGACTGCGTTCACCTTGACCCGCTTTGCTGGCTGGGAGGGTAGACTCCG
GGCGTGGATAAGTCAGCCGGAAGTGTTGGAGGCAGGGTTGCGAAACCACC
AGGAAGAGAAGGCGTTGCACTACGTATCCTGCATCATCAATCACGTGGAG
GTGGGTTGATACGGTATTCAGTTAGCGAGTGGGGCATTTGTGGAAGGGCT
TGCGTGTCATCTCCGCATCCGTGTGTGAACAAGTCAAAACTTCCATCCTC
CTGCATCTGCACGTTACTGCGGTGATTGTAGGTTTGAGAAAGCGCGCCGT
GTGTTTATGTCTGGTAGGAATAGGTGTGTTGATCAACCATCCAATTTCAT
GTTGTTGATGTGTATTCCACGGCCAAGTAGCTGAGGTACTCTCCCCATGC
CCGCGCTCCTCTGATCGAACCGTTCCCCATCCCCTCCCCTTAATGCAGGA
GTTGTACAAGGTGTACGTGAAAGAGCGCAAGGATTCCGTGGCCGTGGAGC
TCTCTTACCCGAGTGAAAGGTATCAGATCACAAAACCGCGCGGGCAAGTC
CTGTACTACATTGCCGGGTGGGCGGCCAGCAATGCTTGGGCGCATCAAAG
AAGACACAACCTTTCCCAGGATTGGGTACGTGTCGTCCAACACAACACTC
GCCGGTCCAGTGGGGAGGCGATATGTACTGATTCTTTGCTGAGAGATTTC
GTAGCAAAAGTCGATTCGAAGAACGATATGAAGAACGGTCCGGGACTTCT
TTACCCTACGATGGAGTGGGTAGAGTTCGTGTATGCTGTGGAGAGGGGCA
TATTCCATTTTTTGAAAAACCCCATCTTCCTTGCTGCTTGCGTCGGAGAC
TTGCCAGCCGAGATTGTCAAAGTAGTAAGCGAGGCGGAGGTTCTCAAGGA
AGTGTGGGGAAACTGCTGCCCCCTGGTCCTCCTGCCATCGATCCTAGTGT
ATCTCAGGAGATGTTTCTTTTCGTTGTCGGGAAAATCCTCAACGTGCGAA
TGGGTGACTTCGCGAAGAGTGTAAGGGAGAATACTTCCCTCAAGTTCTCG
AAGACCGCGCCTGCTTTGCGGCAACAGCTGAACGCGCGTGTCGGGCCTAA
TGGAGGGGCGGGGGCCGGTAGTGGCGAAGCAACGGGGGTTGCACAGGGGG
GC
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Coding sequence (CDS) from alignment at Scaffold_347:53115..55366+

>EsuBft3167_3a-0001 ID=EsuBft3167_3a-0001|Name=EsuBft3167_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=285bp|location=Sequence derived from alignment at Scaffold_347:53115..55366+ (Ectocarpus subulatus male Bft15b)
ATGGAATGGATGCGGAGCGCTGTTTTCGGCGAGGACACCCCATCACCTGA
CAGGGTTATTACGAGGCTGTTACGGCGGGCGGCGAGGAGAAAGAGGACAG
CGATGATGCAGGAACACATCGCGAGATGCATCCAGGGCGCAAAAGATGAC
GACCCCTCCGTACAAAATCTTAGGGTTTACGTGCGGAGCCAATTCGCGAG
CTGTCTTCGCGGAGACCTAGACGGCGTCAAGAAAAAGGTGTGGGAGAGGG
TGGACCCCCTCTTCTTCGAGGGACGTAGATGCTGA
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