Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft3135_3 |
| Protein domains | IPR002181 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Length | 88 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft3135_3a-0001 ID=EsuBft3135_3a-0001|Name=EsuBft3135_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=887bp|location=Sequence derived from alignment at Scaffold_106:84640..86981+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CACCGCGCCATCGAGGCGGCTCTTAATCGACCATCTATCTAGCTCAAACA
GCCTATAATAGAGGCCTCTCGGATCTTCATGCCACTCTAACTGCTTCACA
TGCCTTCCGAGCTTGCTCTGGGTCCACCTGGCGGCGGCCCATGCTTATCA
ACAAAACCAGCAAAAGACCGACGATGGCCCGCGTCGGCGGTGGGTGGTGG
TGGTGCTGCTGTATCTCGTCGCTGGATGCTCTGATTGCGACGCTGAAGTG
CTCAAGCGAAAACTCGGGTCTCTCCCAGTGCTGCACGACTGAAAAAAAAC
ACAAGGTGGGCCAGCAGGCTTGTGAGGTGAACAGCCCCACAGCTCTACCA
GGAAACGGAGGAGGAAGAGGAGACCCTCTGNTCGGTGCACGTGCCCGTCG
AACGGGAGGAATGACCCGGTCGGGCAGGAAACGGAGGAGGAAGAGCCAAC
GCCCAGACTACTTCCTAGCTATTTTCGCCGAGAAAGAAAGGAAGGCAGAG
TTTCGCCAATGCAGTAAATGCAAGTACCGGAAATCGGACAGGAGCCGCGT
AAGGTGGTATCCCATGGATGCTGCAGGAGATCATGTCGCGGAGGGTAATG
CGATGGTGAGTGATGGTGATTGGTGGTGCGGCCGTTGCTACCAGAGCCGG
TTGAACGGCATGAAGAGAGACGACAAACCGACAGAGGAACAAGCGGGGGA
CGAGGCGCNGCGCCGACGCTTCTAGAGCCTTCGAGCACGGTGCGCAGGAT
GATGGATGACGTCCTCGGTCGAGGTGAGATCCTTTGCTGGCAGAACGTCG
CCGGTTGGCTAGCTGCTGAACGCGCGAAGGTTGGCATGGGGGAGATAACG
GGGAAGTACGCACGACAACTCGTCCTGGACTTGTTTA back to topprotein sequence of EsuBft3135_3a-0001 >EsuBft3135_3 ID=EsuBft3135_3|Name=EsuBft3135_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=194bp
MLINKTSKRPTMARVGGGWWWCCCISSLDALIATLKCSSENSGLSQCCTT
EKKHKVGQQACEVNSPTALPGNGGGRGDPLXGARARRTGGMTRSGRKRRR
KSQRPDYFLAIFAEKERKAEFRQCSKCKYRKSDRSRVRWYPMDAAGDHVA
EGNAMVSDGDWWCGRCYQSRLNGMKRDDKPTEEQAGDEAXRRRF back to topmRNA from alignment at Scaffold_106:84640..86981+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft3135_3a-0001 ID=EsuBft3135_3a-0001|Name=EsuBft3135_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2342bp|location=Sequence derived from alignment at Scaffold_106:84640..86981+ (Ectocarpus subulatus male Bft15b)
CACCGCGCCATCGAGGCGGCTCTTAATCGACCATCTATCTAGCTCAAACA
GCCTATAATAGAGGCCTCTCGGATCTTCATGCCACTCTAACTGCTTCACA
TGCCTTCCGAGCTTGCTCTGGGTCCACCTGGCGGCGGCCCATGCTTATCA
ACAAAACCAGCAAAAGACCGACGATGGCCCGCGTCGGCGGTGGGTGGTGG
TGGTGCTGCTGTATCTCGTCGCTGGATGCTCTGATTGCGACGCTGAAGTG
CTCAAGCGAAAACTCGGGTCTCTCCCAGTGCTGCACGACTGAAAAAAAAC
ACAAGTACGCTGAATAACGCTTCCAACGGGAAAGTAGCCCCTTGTGGAAA
CTTCTCTGATCAGGCGGCTCGCTTGGCAACAGACCTCCACACCTAGCACC
GGCTCTTGAGGGCGAACGAGAGCATAAACTGTCCAGACTTAAAAGAGGTA
TGTAAATAAGATGCCAGGGCACGCCAGGGTATGTTTTATATGTCCAGTTG
CGCACGGTATGGTGAAAAAGTTGGACTTTAGCTAGAAGAGCGTACCACCA
TCCAGCAGCTCCAAAATCAGGGAGCGAGCTTCACACGCGACCCGACCTCT
GCGCGAGGTAGTTGTATTGCAGCCTAACTATGCTGCCGCCTTATACTTAG
GTTGTGTTTCCACCTAATGCAAAAGGTTCGAGGCGATTTGGTGCGGCAGG
GGATAAGCATGGTGTGTCCAAAATTCAAATTTCAGGAGAGTCCACGTCTT
GGGTCCGAACTCAGCCCTCTTACACGTTGCGCATGTACATCCATCCATTG
CATCCACCATTCACACCCAAGATACGATGGAAATGCTCGATGCAGTAATT
CCAGCTCAGGGTCAGCCAATCACTACGAGTTTCAGTCGAATTGGGCTTTC
AAGAGGGCAAGTACGATTTCTTCGAGTGCAATTATTACGCTCGGTGCTTT
GCCGATATACGAGCCGAACATGACTCGGGGCGCTTAGCTGCAGACACTCC
AGTCCGTGCATAAAGATTTAAACGCCGCAGCATCATAGGGTCAGGTAGAT
AAACTACGTATTTGAACAGGTTTCAGTCCGTTGCGTTCTCAGGTGCATAG
GCGCGCCTGTAAAGAGGATCAGATCTTATGCATGGGTTAGAAGGGGCACC
GAAGATCCCACCCCACGAATAAGCGTGCGCCTGGCTTAGCTGTACGTTCA
AGAGGAACATGTTGTTTTTGTAACTCTGGTCAGGTTTCGAATGCATGGAC
AAACAGCCGGCATAGGTCGAGCTGCTGCCAGATGAATCGTCAGAGACGTA
GGGTGGGCCAGCAGGCTTGTGAGGTGAACAGCCCCACAGCTCTACCAGGT
ACGCCACCGGCGATGCCTCGGAACCAGTATGGGAGCCCTTCTACACCCGG
AAGTGGGGGTATGCAGCTGATACTAACCCTTCGACAGCTCACGGAAGGCG
CGCTATCCCCGCGTCAGCCAGTGGTCGACGACACAGGAGGAGACTCCACA
AGTGAACGTCCACGGAGCGGGAGCAGGAGACAGGGTAACCTAACCACCGA
GGCGCACACCCCCGTCGCCGCGACAAAGCGCGACGCGGGAGATTCCGGTG
CACGTGTCCGTCGAACGGGAGGAAAGACCCGGTCGGGCAGGAAACGGAGG
AGGAAGAGGAGACCCTCTGNTCGGTGCACGTGCCCGTCGAACGGGAGGAA
TGACCCGGTCGGGCAGGAAACGGAGGAGGAAGAGCCAACGCCCAGACTAC
TTCCTAGCTATTTTCGCCGAGAAAGAAAGGAAGGCAGAGTTTCGCCAATG
CAGTAAATGCAAGTACCGGAAATCGGACAGGAGCCGCGTAAGGTGGTATC
CCATGGATGCTGCAGGAGATCATGTCGCGGAGGGTAATGCGATGGTGAGT
GATGGTGATTGGTGGTGCGGCCGTTGCTACCAGAGCCGGTTGAACGGCAT
GAAGAGAGACGACAAACCGACAGAGGAACAAGCGGGGGACGAGGCGCNGT
ATCCCGTGGATGCTGCAGGAGATCATGTCGCGGAGGGTATTGCGATGGTG
AGCGATGGTGATTGGTGGTGCGGCCATTGCTACCAGAGCCGGTTGAACGG
CATGAAGAGAGACGACAAACCGACAGAGTATCCAGCGAACAGGTCATGTG
GATCGGGGGACGAGGCGCCGACGCTTCTAGAGCCTTCGAGCACGGTGCGC
AGGATGATGGATGACGTCCTCGGTCGAGGTGAGATCCTTTGCTGGCAGAA
CGTCGCCGGTTGGCTAGCTGCTGAACGCGCGAAGGTTGGCATGGGGGAGA
TAACGGGGAAGTACGCACGACAACTCGTCCTGGACTTGTTTA back to topCoding sequence (CDS) from alignment at Scaffold_106:84640..86981+ >EsuBft3135_3a-0001 ID=EsuBft3135_3a-0001|Name=EsuBft3135_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=585bp|location=Sequence derived from alignment at Scaffold_106:84640..86981+ (Ectocarpus subulatus male Bft15b)
ATGCTTATCAACAAAACCAGCAAAAGACCGACGATGGCCCGCGTCGGCGG
TGGGTGGTGGTGGTGCTGCTGTATCTCGTCGCTGGATGCTCTGATTGCGA
CGCTGAAGTGCTCAAGCGAAAACTCGGGTCTCTCCCAGTGCTGCACGACT
GAAAAAAAACACAAGGTGGGCCAGCAGGCTTGTGAGGTGAACAGCCCCAC
AGCTCTACCAGGAAACGGAGGAGGAAGAGGAGACCCTCTGNTCGGTGCAC
GTGCCCGTCGAACGGGAGGAATGACCCGGTCGGGCAGGAAACGGAGGAGG
AAGAGCCAACGCCCAGACTACTTCCTAGCTATTTTCGCCGAGAAAGAAAG
GAAGGCAGAGTTTCGCCAATGCAGTAAATGCAAGTACCGGAAATCGGACA
GGAGCCGCGTAAGGTGGTATCCCATGGATGCTGCAGGAGATCATGTCGCG
GAGGGTAATGCGATGGTGAGTGATGGTGATTGGTGGTGCGGCCGTTGCTA
CCAGAGCCGGTTGAACGGCATGAAGAGAGACGACAAACCGACAGAGGAAC
AAGCGGGGGACGAGGCGCNGCGCCGACGCTTCTAG back to top
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