EsuBft3125_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3125_2a-0001
Unique NameEsuBft3125_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:681441..685028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LFJ6
ProteomeIdEsuBft3125_2
Protein domainsCoil
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length2001
Evalue5.39e-12
EggNOG OGsKOG1823@1|root,KOG1823@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
KEGG koko:K14772,ko:K16569
GOsGO:0000166,GO:0000287,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033218,GO:0035639,GO:0036094,GO:0042277,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043295,GO:0046872,GO:0046983,GO:0048037,GO:0072341,GO:0097159,GO:0097367,GO:1900750,GO:1901265,GO:1901363,GO:1901681
Descriptionmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG categoryS
BRITEko00000,ko03009,ko03036,ko04147,ko04812
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3125_2aEsuBft3125_2aEctocarpus subulatus male Bft15bgeneScaffold_499 681441..685028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3125_2a-0001EsuBft3125_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 681888..685028 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3125_2a-0001-exonagat-exon-36540Ectocarpus subulatus male Bft15bexonScaffold_499 681441..681924 +
EsuBft3125_2a-0001-exonagat-exon-36537Ectocarpus subulatus male Bft15bexonScaffold_499 682330..682568 +
EsuBft3125_2a-0001-exonagat-exon-36539Ectocarpus subulatus male Bft15bexonScaffold_499 682684..683514 +
EsuBft3125_2a-0001-exonagat-exon-36541Ectocarpus subulatus male Bft15bexonScaffold_499 683573..683781 +
EsuBft3125_2a-0001-exonEsuBft3125_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 684621..684624 +
EsuBft3125_2a-0001-exonagat-exon-36538Ectocarpus subulatus male Bft15bexonScaffold_499 684795..685028 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3125_2a-0001-exonagat-five_prime_utr-7853Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 681441..681887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3125_2a-0001-cdsEsuBft3125_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 681888..681924 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3125_2a-0001 ID=EsuBft3125_2a-0001|Name=EsuBft3125_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2001bp|location=Sequence derived from alignment at Scaffold_499:681441..685028+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGGAATCTTTCGTGATATGATCGGCGTGAGGCGTTGAATTTCTGAGGG
GTTTTGATCCGGTGGCCGGGTTTCCCCTTTACTTTTGGTTTGTCGTTGTG
TTTCGGTTTTTCGGACGTATTTTCGACGCACTAGAGGTTCTTCACTGGCG
TAAAGAATCAGGGAGGGTGTTTGTGCGTAGAAGTAGATAGTCGAAAAGTA
GCCGTTACGTAGGACGCAGCTGGGACAACTTGAAGCGTATGTGCTGAGAG
GCTTTGGATGATAGTGCGGAGTCCCCATGTTCTCTCGAGAATTGGGGCCT
CTCCTCCTTCTCCCTCTCTCCTCTCTCATGCGAGCTAATACACACAGTTA
AACAGCAGCCCCAAGTCCGCCGGCCCTTAACAGGGCTAGGGCTCACGAAC
ACGCTAGCGTTCGTCCTCCCGGGAGGATCCGCAAGACGGTGCGGGCTATG
CCAAGCGAGAGGCAGCGGGGTTCCAGCAGCCAGGGGGACGACGCTGGTGG
GCGAGCTCCGGGAGTGCCTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGAGGACGAGGTTGGGGAGCGCCGGCGGCACCACCGGCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCGAGCGTCGCCCCA
TCTACCACGTCGACCGGCACGGCCGATGTGGGCGGCGGCGAGGGCGACCA
CCGCAGCAGTAACAGCCGCGGTAGCGGCGGCAGCAGCGGCGATGACAGCG
GCAGCGACAGCAGCAGCGGCAGCGACAGCGAGACGGATCTCCCGGCGCTC
TGTGGGCCAGAGGCCCGGCGGCTCGCCCGCTTCGACAAGCCGGCGGAACT
CACCAGCCGCCGCACTAGGGAGAACCCTCGCCGAAATCCGAGGTACGAGT
CGCCCCCGTCGCCGNGCAGCAGCAGCCGCGGTAGCGGCGGCAGCAGCGGC
GATGACAGCGGCAGCGACAGCAGCAGCGGCAGCGACAGCGAGACGGATCT
CCCGGCGCTCCGTGGGCCAGAGGCCCGGCGGCTCGCCCGCTTCGACAAGC
CGGCGGAACTTACCATCCGCCGCACCAGAGAAAACCCTCGCCGAAACCCG
AGGTACGCGTCGCCCCCGTCGCCAACGAGTGCCGAAGCCCTGCTCGCCTC
GGTGGCGAGCCTGCCCGTCAGCAGCACGGAGGAGTTCACCAGCTGGATGC
TCTCGGCGGTACTTCACGTTGCGGAAGGGCTAGAGGCGAGGGTGGTGCGA
GAGTTGCAGTTCGAGCGGGCGGAGGAGGCCCAAGCTGCGCGTCAAGGGGG
CGTTGTCCTTGAGGACAACCAAGGGGCCATAGCGTTGGTGCAGAACCCCC
TCAGCTCAGGTCGCACGAAACACATCGATGTGCGGTTTCATTTCATCCGC
GGATTGTTTAGGTCGGAAGATATTTCGGTCAAGTTCGTTCCGACAACGGA
GCAACACGCGGACCTCCTAACCAAGGCCCTCAGCAGGGCCAGTCTGCAGT
ACCACCGGCGCAAACTGGCCGCAAACAGCTCCTACAAGCCACCAAACCCC
CCCTCGGTAGACGTCCGCAAAGCCGAATCCGCCGAACCCGCTTCTTCTAG
AGTCACCGCCCCCGCGGAAGCAACTTCTCCTATTGCCACCACCGACGCGG
CGGACGCAGCGTTGATGGATATAGACAGCGAGAAGAGTTCAACAGCGTTA
GCGGTTCCCGCCGTCCCGTCGTCTCTGGTAAAGCCTTCCTTTGATGCGTG
A
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protein sequence of EsuBft3125_2a-0001

>EsuBft3125_2 ID=EsuBft3125_2|Name=EsuBft3125_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=517bp
MPSERQRGSSSQGDDAGGRAPGVPGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDEVGERRRHHRXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVA
PSTTSTGTADVGGGEGDHRSSNSRGSGGSSGDDSGSDSSSGSDSETDLPA
LCGPEARRLARFDKPAELTSRRTRENPRRNPRYESPPSPXSSSRGSGGSS
GDDSGSDSSSGSDSETDLPALRGPEARRLARFDKPAELTIRRTRENPRRN
PRYASPPSPTSAEALLASVASLPVSSTEEFTSWMLSAVLHVAEGLEARVV
RELQFERAEEAQAARQGGVVLEDNQGAIALVQNPLSSGRTKHIDVRFHFI
RGLFRSEDISVKFVPTTEQHADLLTKALSRASLQYHRRKLAANSSYKPPN
PPSVDVRKAESAEPASSRVTAPAEATSPIATTDAADAALMDIDSEKSSTA
LAVPAVPSSLVKPSFDA
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mRNA from alignment at Scaffold_499:681441..685028+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3125_2a-0001 ID=EsuBft3125_2a-0001|Name=EsuBft3125_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3588bp|location=Sequence derived from alignment at Scaffold_499:681441..685028+ (Ectocarpus subulatus male Bft15b)
GTTGGAATCTTTCGTGATATGATCGGCGTGAGGCGTTGAATTTCTGAGGG
GTTTTGATCCGGTGGCCGGGTTTCCCCTTTACTTTTGGTTTGTCGTTGTG
TTTCGGTTTTTCGGACGTATTTTCGACGCACTAGAGGTTCTTCACTGGCG
TAAAGAATCAGGGAGGGTGTTTGTGCGTAGAAGTAGATAGTCGAAAAGTA
GCCGTTACGTAGGACGCAGCTGGGACAACTTGAAGCGTATGTGCTGAGAG
GCTTTGGATGATAGTGCGGAGTCCCCATGTTCTCTCGAGAATTGGGGCCT
CTCCTCCTTCTCCCTCTCTCCTCTCTCATGCGAGCTAATACACACAGTTA
AACAGCAGCCCCAAGTCCGCCGGCCCTTAACAGGGCTAGGGCTCACGAAC
ACGCTAGCGTTCGTCCTCCCGGGAGGATCCGCAAGACGGTGCGGGCTATG
CCAAGCGAGAGGCAGCGGGGTTCCAGCAGCCAGGGTACGCAACTCTGAAC
TGGACGCTTTCTGACNCCAGCCTTCCGGAGGGGAGGAAGGCCTCGAAGGG
ACAGCGGAGGGCGGAGCACGGCGGCGGCGGCGGCGGTGGCAACCAGAAGG
GGAGAGGGAGTGGCGCGAAGGCTTGTGGCGGTGGCGGAGGCGGCGACGAC
GATGCGGGTAGCATGCGCGGTCGCTGTTTCCGGTGCGGAGGGGGGGGGAG
GTGGTGTACTTCCCCCGATGCGGTAACCTGTACGTCCAAAACGGTTTCCG
CACACACACCGAACATGCCTGTACCGCAAGTGCTCCTGGCAACGCGAAAG
CGTCGAGCACCCCCGTTGACATCAACGACTTCCACTGCGCGCACGACCAC
TCCCACGAGGTGCTGCTGAGGACCACGGCGAAGCAGCAGGGGACGACGCT
GGTGGGCGAGCTCCGGGAGTGCCTGGGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGAGGACGAGGTTGGGGAGGTGAGGATTACACAAGGTGGAG
GGAGGACAAAGGGAGAACCTGTGGATGGAGAACCAGGTTTCAACCTTGGC
ACGACGGCAGCCCCGGGGCCCGCGGGGCCGCCCGCGCGCGTAGCGCCGGC
GGCACCACCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGCGCGAGCGTCGCCCCATCTACCACGTCGACCGGCACGGCCGATGTG
GGCGGCGGCGAGGGCGACCACCGCAGCAGTAACAGCCGCGGTAGCGGCGG
CAGCAGCGGCGATGACAGCGGCAGCGACAGCAGCAGCGGCAGCGACAGCG
AGACGGATCTCCCGGCGCTCTGTGGGCCAGAGGCCCGGCGGCTCGCCCGC
TTCGACAAGCCGGCGGAACTCACCAGCCGCCGCACTAGGGAGAACCCTCG
CCGAAATCCGAGGTACGAGTCGCCCCCGTCGCCGNGCAGCAGCAGCCGCG
GTAGCGGCGGCAGCAGCGGCGATGACAGCGGCAGCGACAGCAGCAGCGGC
AGCGACAGCGAGACGGATCTCCCGGCGCTCCGTGGGCCAGAGGCCCGGCG
GCTCGCCCGCTTCGACAAGCCGGCGGAACTTACCATCCGCCGCACCAGAG
AAAACCCTCGCCGAAACCCGAGGTACGCGTCGCCCCCGTCGCCAACGAGT
GCCGAAGCCCTGCTCGCCTCGGTGGCGAGCCTGCCCGTCAGCAGCACGGA
GGAGTTCACCAGCTGGATGCTCTCGGCGGTACTTCACGTTGCGGAAGGGC
TAGAGGCGAGGGTGGTGCGAGAGTTGCAGTTCGAGCGGGCGGAGGAGGCC
CAAGCTGCGCGTCAAGGGGGCGTTGTTAGTGCGTGCTGTGCTGTCACTTG
TTGACCTAGAGACCAGTGGTAGCAGCATCCAGGTCCTTGAGGACAACCAA
GGGGCCATAGCGTTGGTGCAGAACCCCCTCAGCTCAGGTCGCACGAAACA
CATCGATGTGCGGTTTCATTTCATCCGCGGATTGTTTAGGTCGGAAGATA
TTTCGGTCAAGTTCGTTCCGACAACGGAGCAACACGCGGACCTCCTAACC
AAGGCCCTCAGCAGGGCCAGTCTGCAGTACCACCGGCGCAAGTTGATGAA
TTTGCCGAGTAGCTGTAGCAGTTTCTAGCACTTGGGAGATGCGGGGAAAG
GCGCATAACTGTTGCGGTCTGTGTACCAATGGCAGGAGTAGGGGGCATTG
GGAGACCATCGTCCGGGGCAACGTAGTTCCTCGCGTTCTTGTCTTCGCCT
TGGCCTTTCTAATAAGTGCGGCAGTTGTGATCCGCTGTGATAGCGACGGA
TTTTGTGGTGGTAGGGTTTTTTCGAGGGGTTTTACCCGGACGCCGGGTTC
CCCCTCCATATATTACCATGTTGGTATTGTTATTTTTTTATGTATCCAGC
GGCGTTCTTGCCCCATTGATTGATGGTTAGTCACTTGCGTGAAGAACCAG
GGAGGGTGTTCGTGGGNNNNGCAGGGCCAGTCTGCAGTACCACCGGCGCA
AGTTGATGAATTTGCCGAGTAGCTGTAGCAGTTTCTAGCACTTGGGAGAT
GCGGGGAAAGGCGCATAACTGTTGCGGTCTGTGTACCAATGGCAGGAGTA
GGGGGCATTGGGAGACCATCGTCCGGGGCAACGTAGTTCCTCGCGTTCTT
GTCTTCGCCTTGGCCTTTCTAATAAGTGCGGCAGTTGTGATCCGCTGTGA
TAGCGACGGATTTTGTGGTGGTAGGGTTTTTTCGAGGGGTTTTGCCCGGA
CGCCGGGTTTCCCCTCCATATATTACCATGTTGGTATTGTTATTTTTTAT
GTATCCAGCGGCGTTCTTGCCCCATTGATTGATGGTTAGTCACTTGCGTG
AAGAACCAGGGAGGGTGTTCGTGGGTCTGCGAACATTGGTGGTGTTGAAT
ACATGTGCTGTATGATTTGGGGTAACGCAGACTGGTAAGATTGCCGGTTG
ATAAGGGGCACCGCGATGATTCACGGGGCCCCTCCTTGCTGTGGGAGCCG
CTCTTCGAGCATTCCCTCTTTCGTCCATGTGAGGGACGATCGTCTAGCTC
TCGTGAAGTTAATACATCACCAAAACAGTCTCACCCGATAAATAAGTGGC
GTAGGCCGCAAACAGCTCCTACAAGCCACCAAACCCCCCCTCGGTAGACG
TCCGCAAAGCCGAATCCGCCGAACCCGCTTCTTCTAGAGTCACCGCCCCC
GCGGAAGCAACTTCTCCTATTGCCACCACCGACGCGGCGGACGCAGCGTT
GATGGATATAGACAGCGAGAAGAGTTCAACAGCGTTAGCGGTTCCCGCCG
TCCCGTCGTCTCTGGTAAAGCCTTCCTTTGATGCGTGA
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Coding sequence (CDS) from alignment at Scaffold_499:681441..685028+

>EsuBft3125_2a-0001 ID=EsuBft3125_2a-0001|Name=EsuBft3125_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1554bp|location=Sequence derived from alignment at Scaffold_499:681441..685028+ (Ectocarpus subulatus male Bft15b)
ATGCCAAGCGAGAGGCAGCGGGGTTCCAGCAGCCAGGGGGACGACGCTGG
TGGGCGAGCTCCGGGAGTGCCTGGGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGAGGACGAGGTTGGGGAGCGCCGGCGGCACCACCGGCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCGAGCGTCGCC
CCATCTACCACGTCGACCGGCACGGCCGATGTGGGCGGCGGCGAGGGCGA
CCACCGCAGCAGTAACAGCCGCGGTAGCGGCGGCAGCAGCGGCGATGACA
GCGGCAGCGACAGCAGCAGCGGCAGCGACAGCGAGACGGATCTCCCGGCG
CTCTGTGGGCCAGAGGCCCGGCGGCTCGCCCGCTTCGACAAGCCGGCGGA
ACTCACCAGCCGCCGCACTAGGGAGAACCCTCGCCGAAATCCGAGGTACG
AGTCGCCCCCGTCGCCGNGCAGCAGCAGCCGCGGTAGCGGCGGCAGCAGC
GGCGATGACAGCGGCAGCGACAGCAGCAGCGGCAGCGACAGCGAGACGGA
TCTCCCGGCGCTCCGTGGGCCAGAGGCCCGGCGGCTCGCCCGCTTCGACA
AGCCGGCGGAACTTACCATCCGCCGCACCAGAGAAAACCCTCGCCGAAAC
CCGAGGTACGCGTCGCCCCCGTCGCCAACGAGTGCCGAAGCCCTGCTCGC
CTCGGTGGCGAGCCTGCCCGTCAGCAGCACGGAGGAGTTCACCAGCTGGA
TGCTCTCGGCGGTACTTCACGTTGCGGAAGGGCTAGAGGCGAGGGTGGTG
CGAGAGTTGCAGTTCGAGCGGGCGGAGGAGGCCCAAGCTGCGCGTCAAGG
GGGCGTTGTCCTTGAGGACAACCAAGGGGCCATAGCGTTGGTGCAGAACC
CCCTCAGCTCAGGTCGCACGAAACACATCGATGTGCGGTTTCATTTCATC
CGCGGATTGTTTAGGTCGGAAGATATTTCGGTCAAGTTCGTTCCGACAAC
GGAGCAACACGCGGACCTCCTAACCAAGGCCCTCAGCAGGGCCAGTCTGC
AGTACCACCGGCGCAAACTGGCCGCAAACAGCTCCTACAAGCCACCAAAC
CCCCCCTCGGTAGACGTCCGCAAAGCCGAATCCGCCGAACCCGCTTCTTC
TAGAGTCACCGCCCCCGCGGAAGCAACTTCTCCTATTGCCACCACCGACG
CGGCGGACGCAGCGTTGATGGATATAGACAGCGAGAAGAGTTCAACAGCG
TTAGCGGTTCCCGCCGTCCCGTCGTCTCTGGTAAAGCCTTCCTTTGATGC
GTGA
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