EsuBft3113_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3113_3a-0001
Unique NameEsuBft3113_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:63311..67165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3113_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length327
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3113_3aEsuBft3113_3aEctocarpus subulatus male Bft15bgeneScaffold_347 63311..67165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3113_3a-0001EsuBft3113_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 66976..67165 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3113_3a-0001-exonagat-exon-59814Ectocarpus subulatus male Bft15bexonScaffold_347 63311..63426 -
EsuBft3113_3a-0001-exonagat-exon-59815Ectocarpus subulatus male Bft15bexonScaffold_347 63556..63750 -
EsuBft3113_3a-0001-exonagat-exon-59817Ectocarpus subulatus male Bft15bexonScaffold_347 63963..66298 -
EsuBft3113_3a-0001-exonagat-exon-59816Ectocarpus subulatus male Bft15bexonScaffold_347 66492..67048 -
EsuBft3113_3a-0001-exonEsuBft3113_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 67098..67165 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3113_3a-0001-exonagat-three_prime_utr-12338Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 63311..63426 -
EsuBft3113_3a-0001-exonagat-three_prime_utr-12339Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 63556..63750 -
EsuBft3113_3a-0001-exonagat-three_prime_utr-12340Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 63963..66298 -
EsuBft3113_3a-0001-exonagat-three_prime_utr-12341Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 66492..66975 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3113_3a-0001-cdsEsuBft3113_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 66976..67048 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3113_3a-0001 ID=EsuBft3113_3a-0001|Name=EsuBft3113_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3272bp|location=Sequence derived from alignment at Scaffold_347:63311..67165- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGGATATAAAGTCGATGCCTACATCAAAGCGCTAGCACCAAAAAA
CATGCTGCGCATGATTAGGCATTACGCAAAGCATACCTTGCGACTTTCCC
CCCTCCGCTGGTTCAGCAACGTGAGGTACCTCAACTGGTAGTGATTGGTT
TTACTGGTTCTGTTGCAGACTCCTTGGGGCTCCGTGGGATGTTCATGCGG
GCAAATATTCTAGCGTTCATTCCCCCCCAACACCGTGCATTCCGTGACGC
TGTACAACGTATTATCCCTTGTTTTAGGTATGGTGCTACCCTAGATAGTA
TGATGTTCAATACCACCAACGTAGCGAGAGATGTAAATCATGGTAAATAT
AGATGCATTTGCAAAGACCACCAATGGAGTCAGTACACGGTTGTTGCCAA
GGATGGTTCCAAATGTTTGATTACCACAGATGCCGGATGTCTTCAGGATG
ACAATGCTGCAGCTGTGCTAAACCTTCAAGCTGGTTTTAGAGCAGAATAT
GCTGAAGCCTTGAATGACCTCTCTTTCTTTGAATCGCTCATAGACGCCAT
AGAATCTTACATTGGCGATTTATGTCATGAACTCAAAGTGCCACGCGATG
ACATTGAGGACTGGGACGATATTTTGATATTTTGTACGACGCGATAGAAC
AAAAAGTGACTGACGCGGACAAGAGGGAGGTTGCTAAGCCTCTTACGGGC
CACATAGATTTTGCTGCAGCTAGGACATCTTTTCAACAATTGCACAAGAA
GGTGGTGTTTACGAGAGTCGACAAAGCGGCCAACTGCATCTGTATCACTT
GCAAGGCGTGCTATATTAGGCTAGCCAAAGCAGAACTTGAAGGACCGTGG
TATAGGACAGTACACGGAGAGTTGGAGCTGGTGAAACAGACGACCATTGA
CCGACAACACAAGTTTTTGCTAGATGAAAAGTTGCCCATCCCACAGCAGC
AGTACAAAGACGAGGATGGTGACACTCAGTATAAAAACAGTGAGAAGTTA
CCCACACGATACGTCACTGCTAAACTACATAAGCCGTTGGTAGCGACACG
TGGAATTACGGCTTGTTGTGGTACGATAACAGAAGGGGTGGCTAAGGAAG
TCAACGCAGTCCTGGTTGGTATCCGGCCTTGTTTACACACGATCCGGGGT
GAAGAATGCGCAAAAGTTGGTATTGCTGCCAAGGAATGTTGGATTACCTC
TAGCGGGGAAAGTCTTCTAGAAGTAGCACAGGATATCGATATTCGAGCAC
AAATGGAGGGATGTACTGATGCGCATGTCTTCCAAACATTTGACTTCGTT
GGTATGTACCCTAATATCCCTGTAGTACCATTGAAGGAAAAATTGAGGGA
AGCTTTGAAACTGTCGTTTGAACACCAAGCTGAGAGACATGGGTTTAAGT
CGATGAAGTTGAGATGGGGTATTGGGCCTGATAATAAAACACCATTTGTT
AGAGACATCGAGTGGTCGAAGGAAAACCCGAGCAACGTAACATCTAGCAG
AGGTCGAGCGAATTACATTGGATGGGAACGGGTCTGTAAATGGATAGATT
TTATTTTGGATGAAGGATTTGTACAATTTGGGAACGGCATGTACCAACAA
GCCTCTGGTATCTTTATGGGAACGGCACCAGCTCCCGAACTAGCGTATAT
TTTTGCGTTTATGCATGTCCTCGATTTTTTGAAGGAAATGGTGGATGAGT
ATTTAACTGCTACACACGCTGGGACTACATCGTTGTATCCATTTGAATTT
ATTGAGCAGTACAGCATTGATTGGTACAAAACGGTATATGGATGACATTA
TTACGGTGCGATATGGTAACCAGACTGGACCAACATTTGAAGATATTATA
TATAAGGAGGGTAATCAATATGGTGGTATGTACCCAACGATGGTGTTAGA
TTCGAATGGTGATGAGATAGACAACCCCGTTCGCGTTACCCAAGAACAGT
GTGGGGAATCAGCACACTTTCTGGATATGCAAAATGGCAAGACATTCCTG
GTAACACTTGTATCGGTATGTATAATAAGCGTCAACATATGGCTACGCTA
AATAAAGCAATATCGGGCATTCCCACATTGGGAAACAGTGTTATCTACTA
GGTCGACGTTACACTGTCAAATGTACCGATTCGCTATTAGATGCAATGAC
ATTCGATTTTTCCAAGCTGCCACAGCCAGATTGATGGCTGACATGCTTGC
ACGTTTCTATTCTAGTCGACTTATACGTAATACTTTACACAATTTCATGT
ATACCTTTTTTCGTACCTCGCCAGTGACTGCAAACATCGTGGGTGTAAAT
GCACCTATGGTGCGTAATTCATACTGGAAGAAAGTGGAGTTGGGTATTTG
GAATCGAGTAGATACGAATGAAGTTTTGGTAGATTAGCCTGCGTGCGATT
ATCTTTTACTTTATTGGGTAGTGTCCCGTTTCTTTGTTGAGCAATTCCTG
GAGTAGTGTTGTTGTGTTATGTTCAAATATAATTACATGTCTATGTGCAA
AATAAGAACGCCAGCTTATAAATAATGACATAAAAATCATGTTCAAATTG
CTTCTAGCGCTACCAAAATTGTACACTCCTACACACGGACGAGAGAGGTG
AACACACCCACTGCATTTAACACACACCCACATGTCGGTGATGAAACCTA
ATCAACCACATGCCTCTATCGGCGACCACGTCATCAGGAGGCAATGATGA
GAAATGTTCTCCCATGCCCTTCTCACATTTATCGACATGAAATTCCACAA
CATAACATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGCTACCAAACTGATC
TTTTGAGCCTGTCACCCGAGAGTTGTCCCTATATGCTGTCTAGGAAATCG
TAAACATACAGGTAGCTTTCTCTGACCCTATGATTCCATTGTTCATCTGT
CTCTGACTCTTTTCTATGATAGAGATGGCACATCAGCCGCACATACTCCG
CACATATGCATATACCAAACTGAGAATATGTTTGTAAGCTGATGGGGATT
GCATGTCCTACAACTAACAGGGTGCGACACACAAAACGCCCGACTACCCA
ACAGCATACCAAACACCTTTCGTCTGCACCTTCCCAACATAACATATATG
AGACACACAAGACAGCTACCAAACTGATTTGTTGAGCCTGTTACCCACAG
GGGAGATGTCCCTATATCTATG
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protein sequence of EsuBft3113_3a-0001

>EsuBft3113_3 ID=EsuBft3113_3|Name=EsuBft3113_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=46bp
MFGYKVDAYIKALAPKNMLRMIRHYAKHTLRLSPLRWFSNVRYLNW
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mRNA from alignment at Scaffold_347:63311..67165-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3113_3a-0001 ID=EsuBft3113_3a-0001|Name=EsuBft3113_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3855bp|location=Sequence derived from alignment at Scaffold_347:63311..67165- (Ectocarpus subulatus male Bft15b)
ATGTTCGGATATAAAGTCGATGCCTACATCAAAGCGCTAGCACCAAAAAA
CATGCTGCGCATGATTAGGTATGTAGGGCAGGTGGGTATCACAGAGGATG
TGCATTTAGCGTTCCAGGCATTACGCAAAGCATACCTTGCGACTTTCCCC
CCTCCGCTGGTTCAGCAACGTGAGGTACCTCAACTGGTAGTGATTGGTTT
TACTGGTTCTGTTGCAGACTCCTTGGGGCTCCGTGGGATGTTCATGCGGG
CAAATATTCTAGCGTTCATTCCCCCCCAACACCGTGCATTCCGTGACGCT
GTACAACGTATTATCCCTTGTTTTAGGTATGGTGCTACCCTAGATAGTAT
GATGTTCAATACCACCAACGTAGCGAGAGATGTAAATCATGGTAAATATA
GATGCATTTGCAAAGACCACCAATGGAGTCAGTACACGGTTGTTGCCAAG
GATGGTTCCAAATGTTTGATTACCACAGATGCCGGATGTCTTCAGGATGA
CAATGCTGCAGCTGTGCTAAACCTTCAAGCTGGTTTTAGAGCAGAATATG
CTGAAGCCTTGAATGACCTCTCTTTCTTTGAATCGCTCATAGACGCCATA
GAATCTTACATTGGCGATTTATGTCATGAACTCAAAGTGCCACGCGATGA
CATTGAGGACTGGGACGATATTTTGTTCGACGCGATAGAACAAAAAGTGG
CTGACGCGGACAAGGGGGAGGTTGCTAAGCCTCTTACGGGCCACATAGAN
GTTGAAGCCTTGAATGACCCCTCTTTCTTTGAATCGTTCATAGACGTCAT
AGAATCGTACATTGGCGATTTATGTCATGAACTCAAAGTGCCACGCGATG
ACATTGAGGAATGGGAGGATATTTTGTACGACGCGATAGAACAAAAAGTG
ACTGACGCGGACAAGAGGGAGGTTGCTAAGCCTCTTACGGGCCACATAGA
TTTTGCTGCAGCTAGGACATCTTTTCAACAATTGCACAAGAAGGTGGTGT
TTACGAGAGTCGACAAAGCGGCCAACTGCATCTGTATCACTTGCAAGGCG
TGCTATATTAGGCTAGCCAAAGCAGAACTTGAAGGACCGTGGTATAGGAC
AGTACACGGAGAGTTGGAGCTGGTGAAACAGACGACCATTGACCGACAAC
ACAAGTTTTTGCTAGATGAAAAGTTGCCCATCCCACAGCAGCAGTACAAA
GACGAGGATGGTGACACTCAGTATAAAAACAGTGAGAAGTTACCCACACG
ATACGTCACTGCTAAACTACATAAGCCGTTGGTAGCGACACGTGGAATTA
CGGCTTGTTGTGGTACGATAACAGAAGGGGTGGCTAAGGAAGTCAACGCA
GTCCTGGTTGGTATCCGGCCTTGTTTACACACGATCCGGGGTGAAGAATG
CGCAAAAGTTGGTATTGCTGCCAAGGAATGTTGGATTACCTCTAGCGGGG
AAAGTCTTCTAGAAGTAGCACAGGATATCGATATTCGAGCACAAATGGAG
GGATGTACTGATGCGCATGTCTTCCAAACATTTGACTTCGTTGGTATGTA
CCCTAATATCCCTGTAGTACCATTGAAGGAAAAATTGAGGGAAGCTTTGA
AACTGTCGTTTGAACACCAAGCTGAGAGACATGGGTTTAAGTCGATGAAG
TTGAGATGGGGTATTGGGCCTGATAATAAAACACCATTTGTTAGAGACAT
CGAGTGGTCGAAGGAAAACCCGAGCAACGTAACATCTAGCAGAGGTCGAG
CGAATTACATTGGATGGGAACGGGTCTGTAAATGGATAGATTTTATTTTG
GATGAAGGATTTGTACAATTTGGGAACGGCATGTACCAACAAGCCTCTGG
TATCTTTATGGGAACGGCACCAGCTCCCGAACTAGCGTATATTTTTGCGT
TTATGCATGTCCTCGATTTTTTGAAGGAAATGGTGGATGAGTATTTAACT
GCTACACACGCTGGGACTACATCGTTGTATCCATTTGAATTTATTGAGCA
GTACAGCATTGATTGGTACAAAACGGTATATGGATGACATTATTACGGTG
CGATATGGTAACCAGACTGGACCAACATTTGAAGATATTATATATAAGGA
GGGTAATCAATATGGTGGTATGTACCCAACGATGGTGTTAGATTCGAATG
GTGATGAGATAGACAACCCCGTTCGCGTTACCCAAGAACAGTGTGGGGAA
TCAGCACACTTTCTGGATATGCAAAATGGCAAGACATTCCTGGTAACACT
TGTATCGGTATGTATAATAAGCGTCAACATATGGCTACGCTAAATAAAGC
AATATCGGGCATTCCCACATTGGGAAACAGTGTTATCTACTAGGTCGACG
TTACACTGTCAAATGTACCGATTCGCTATTAGATGCAATGACATTCGATT
TTTCCAAGCTGCCACAGCCAGATTGATGGCTGACATGCTTGCACGTTTCT
ATTCTAGTCGACTTATACGTAATACTTTACACAATTTCATGTATACCTTT
TTTCGTACCTCGCCAGTGACTGCAAACATCGTGGGTGTAAATGCACCTAT
GGTGCGTAATTCATACTGGAAGAAAGTGGAGTTGGGTATTTGGAATCGAG
TAGATACGAATGAAGTTTTGGTAGATTAGCCTGCGTGCGATTATCTTTTA
CTTTATTGGGTAGTGTCCCGTTTCTTTGTTGAGCAATTCCTGGAGTAGTG
TTGTTGTGTTATGTTCAAATATAATTACATGTCTATGTGCAAAATAAGAA
CGCCAGCTTATAAATAATGACATAAAAATCATGTTCAAATTGCTTCTAGC
GCTACCAAAATTGTACACTCCTACACACGGACGAGAGAGGTGAACACACC
CACTGCATTTAACACACACCCACATGTCGGTGATGAAACCTAATCAACCA
CATGCCTCTATCGGCGACCACGTCATCAGGAGGCAATGATGAGAAATGTT
CTCCCATGCCCTTCTCACATTTATCGACATGAAATTCCACAACATAACAT
ATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAGACAGCTACCAAACTGATCTTTTGAGC
CTGTCACCCGAGAGTTGTCCCTATATGCTGTCTAGGAAATCGTAAACATA
CAGGTAGCTTTCTCTGACCCNTCTATCGGCGACCACGTCATCAGGAGGCA
ATGATGAGAAATGTTCTCCCATGCCCTTCTCACATTTATCGACATGAAAT
TCCACAACATAACATATATATGTATGAGACACACAGACAGCTACCAAACT
GATCTTTTGAGCCTGTCACCCGAGAGTTGTCCCTATATGCTGTCTAGGAA
ATCGTAAACATACAGGTAGCTTTCTCTGACCCTATGATTCCATTGTTCAT
CTGTCTCTGACTCTTTTCTATGATAGAGATGGCACATCAGCCGCACATAC
TCCGCACATATGCATATACCAAACTGAGAATATGTTTGTAAGCTGATGGG
GATTGCATGTCCTACAACTAACAGGGTGCGACACACAAAACGCCCGACTA
CCCAACAGCAGTACCANGCCGCACATACTCCGCACATATGCATATACCAA
ACTGAGAATATGTTTGTAAGCTGATGGGGATTGCATGTCCTACAACTAAC
AGGGTGCGACACACAAAACGCCCGACTACCCAACAGCAGTACCAAACACC
TTTCGTCTGCACCTTCCCAACATAACATATATGAGACACACAAGACAGCT
ACCAAACTGATTTGTTGAGCCTGTTACCCACAGGGGAGATGTCCCTATAT
CTATG
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Coding sequence (CDS) from alignment at Scaffold_347:63311..67165-

>EsuBft3113_3a-0001 ID=EsuBft3113_3a-0001|Name=EsuBft3113_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=141bp|location=Sequence derived from alignment at Scaffold_347:63311..67165- (Ectocarpus subulatus male Bft15b)
ATGTTCGGATATAAAGTCGATGCCTACATCAAAGCGCTAGCACCAAAAAA
CATGCTGCGCATGATTAGGCATTACGCAAAGCATACCTTGCGACTTTCCC
CCCTCCGCTGGTTCAGCAACGTGAGGTACCTCAACTGGTAG
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