EsuBft309_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft309_9a-0001
Unique Name	EsuBft309_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_499	contig	Scaffold_499:549373..552436 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft309_9
Protein domains	PF13516
Protein domains	IPR001810
Protein domains	SSF52047
Protein domains	G3DSA
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	306
Hectar predicted targeting category	other localisation
Ec32 ortholog description	F-box domain
Ec32 ortholog	Ec-04_002030.1
Date last modified	2016-06-13
Date creation	2016-06-13

Cross References

External references for this mRNA


Database	Accession
GO	0031227

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft309_9a	EsuBft309_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_499 549373..552436 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft309_9a-0001-exon	EsuBft309_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 549373..552436 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft309_9a-0001-exon	agat-three_prime_utr-12272	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_499 549373..551071 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft309_9a-0001-cds	EsuBft309_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_499 551072..552436 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft309_9a-0001	EsuBft309_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_499 551072..552436 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_499:549373..552436-
coding sequence from alignment at Scaffold_499:549373..552436-

spliced messenger RNA

>EsuBft309_9a-0001 ID=EsuBft309_9a-0001|Name=EsuBft309_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3064bp|location=Sequence derived from alignment at Scaffold_499:549373..552436- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGACCCGTCGAATGCGCGCGAAGGAAAAGCAGCACACCAAATCCGG
ACGGGCCGGGCTTCGCTCCTCCCCCCGCCGCGCAAGAGGAGACGCTAGAA
ACAACAAGCCGAGGGGCTGCGATGCGGATCTCCCACACCACGTCGTGCTG
GAAATCGTGTCCTTCCTGGACACCCGGTCCATCGTAGGTGGCCGGTGCTT
GTCTCGCGCGTTTAGGAACGACGCACCGGCGCTGGTCAAGACGCTGGACT
TCCACATGGGGCAGCAGTCTCCATCCGCCGAAACGATCAAGCTGTTCCCT
GAGGTCAGGCAGGTCAACCTCGACGGCAACCGAGACCTGGTTCACGCGGT
GGTCGCAGGGCTCCGCGGGTGGGGGTCCTCACTGCGCCTCGGCGTTTCCC
TTCACGACTCCGTCCCACAGAAGGAGGAGCCGCTGAGCAACACGGCCACC
GCCGACCTGTGTGCGTTGCCGCTGACCGAGCTCGACATGAAGGAGGTCGT
TGTCGAGTTCCCGCCGTCGCTTCCGATGAACGCCTGGCGAACGCTGCAGA
GGCTCGTGATCCGCGACGCCTTCCTCGGGGACGAGTCCCTGGAGAGCCTG
TCCAAGTCCATCCCTGAGGGTCCCCTACCGCTGCGCCATCTTGACCTCTC
CAGAAACCTCTTCGGGGGCTACGACGCCGTGTTGCCCTTCGCAGGCGCGC
TCCGGTCCTTCCCCGACCTGGAGTGGCTCGAGCTCACGGCGTGCCGCATC
TGTCGCGGCTCGGGTGACTGCATCGTCCGCACGCTGCTCGAGGGCGCCTG
CCCGAAGCTCAGGACCCTGGACCTCTCCCTCAACTTCTTCACGAACGGCC
TCCTCGCGTCCCTGTGCGAAGGGCTGGGGGCGCCGGGGCACGGGCTGCTC
AACCTGCGGAAGCTGGGCTTCGGCTCACGGGTCACCGGCGACGAGATGAT
AACTTGCTTCGAGAAGGTCGGGAAGGCCCTCGCCGCCGGCGGCCTGCCCA
AGCTGGACTTCCTCCACCTTCAGGGCGACATAGGGCCGCGGCAGGTCTCC
CCGGTGCTGAGCCTGTTGAGGGGCGGGGCGTGCCCGATGCTGTCGATGGT
GAAGCTGGAGCGTTCTCTCCGCTCCACGCTTGGCGAGGACGAGTGCGGCG
CCGAGGACGCCGCACAGAGCATGTTCGACCTGGTGATTTCGGACCACATC
CCGCACCTCCGGGAGGTGCACGCGCTGGGCATGGCCCTGAACGAGGGGAT
GGAAAAAGCAAATGAGGCGGGGCGTGACTCGGCATTCTACAGGGCCAGGA
ACCATTCAACCTGGCACCATCTCGCCGTCGCGGGCAAGGCTAGAGGTGTC
CAGGTGTTTGTGTAATGACCTTCTCTGTAGCTTAGAATAGATGCGGTAAT
CGAGTGACGTCTTTCGTAAGCGTAGATTCGGTGGGTGATAAGTGCGGTAG
TTGATTTGCTCGATGATACTCATATATGCGCGTTGGGTATTTCGTGTCTG
CTGTCTCCTGCTGTCAACCCCCACAACAATCTCGGTCTGTTAAGCTCAGA
ATTCAAACACGGATCGAGTATGTTTTCATATTTTTCATCGCAGAACTTTG
CAACTGTGAACAAGTAACGAGCTATCTCCTTTAGTTTTGGGCACGGTTTT
TTTTTTTTTTCGCCAGCTTTCGGAGCTTCAACTCGTGGGCTGGGAGCGCC
GTGAGATAGCGCTCAGCCCTTGTTTTTTCTGTTTGCGTCTTGCGTGGGCC
GTGGGCCGCAGCAGTCACGGCTTCCACGGCGTGTTCGTGTGGCGGGGTTT
AGACCTTTCTTTCTTTGCCGATACATCGTCTCCCGCAGCTAGCTGCAGAT
CGGCTTTCCGTAGGCACAGTTTGATCGCGTTAGAATGTTTCACGGCGTGT
GTTCTCGCCGCTCGTGGTAAACGCCCGGTGCTGTCTGTGTGTCTTGTCCT
TTTCAGAAGGGCCAGCGTAGCATGCCATCGTTTTGTACATGTGGTGTACG
CGCCTTACTTGCAGGAGCAACGTTGTGTCTTGCGGGACAGGTTCTCTGTG
TTGGCAAGGACCACTGCACCGCTGTATATATATATGTATGTATCTGTTTC
ATGTTGTTTGGTTTGTTGAACTCTGTGGCGTGTCGTTTGCCCCTGTACAG
TAACCTGTGGAACGATCATAGTCGGAGTGCAGCAAACTGCCGAGCGACGG
TCTGGGCGCTTGAAATTAGCTGGAGTGCCGGCATAGATGTCAGCGGTATC
TGCTGTTGCCGTCCTTGACGTGCGCCCAGAACGTGTTGTGGAGATGCTGC
ATGCCGCTTGCCGGGGCCTTTTAAACTGCCCTTTCGTGTTACATCCAAGA
AGGGACGCCTATTGTAGGACATAATGAAGCTCGTCTGAAGTAGGTGGGGA
AGCAATAACCAGATGTCTCGAGTGCTTTGTAGCGACAATTAAATGCCGTC
CGATTTTTTTATTGCGTGTTCGCTGCTCGTTGGCGACCGGAACAAACCGA
GAAAGCAGCTGTGTTTTTGAGGGAGAGGGGGTGTTCTCGGCTCTGTTAAG
CTAGCAATGCTCATTCGGAGTGGTTGGTGGAACTGGTTTGTGGATATATC
CTACGGGAGACCGGGACGATTTTCTTTTGTGAAGATAAAACAGCATAGGA
GTGTTGAGCGGACTAGTTGAGCCTCGTGTTATTTTTGAACAAGAGAGCGC
ACATGGTGACCGATTCCCAACTGGTGTGAGGGACTGTGGGTCGGTGGCCT
AGTGAGTGTTAGAGTTTTGCGGCATCCGCATCCTATGCATCGGAGCGGAC
GAACGAACGCAGATGACTCGCGTGTTTGGTGGCTAGCGACGAGAGAATCA
TGGCTCTGCTGTGTGGTGCGCAGTTTAGGATCAAGAAGATTCATCTGCTT
CGAGCAAGCAAACGATTTCTCGGACGGAATCATTCAAACGTTGCAGTTGG
CGTACACACCGCTGTATTTGCGCAAACGTTTGGGGATTATTTTAGCTTCA
TCGCTTGCGGCGAAATCGAACACGGCGAATGCCGCCTTCAATCCGTTTGC
ATTAATATATATTT

protein sequence of EsuBft309_9a-0001

>EsuBft309_9 ID=EsuBft309_9|Name=EsuBft309_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=454bp
METRRMRAKEKQHTKSGRAGLRSSPRRARGDARNNKPRGCDADLPHHVVL
EIVSFLDTRSIVGGRCLSRAFRNDAPALVKTLDFHMGQQSPSAETIKLFP
EVRQVNLDGNRDLVHAVVAGLRGWGSSLRLGVSLHDSVPQKEEPLSNTAT
ADLCALPLTELDMKEVVVEFPPSLPMNAWRTLQRLVIRDAFLGDESLESL
SKSIPEGPLPLRHLDLSRNLFGGYDAVLPFAGALRSFPDLEWLELTACRI
CRGSGDCIVRTLLEGACPKLRTLDLSLNFFTNGLLASLCEGLGAPGHGLL
NLRKLGFGSRVTGDEMITCFEKVGKALAAGGLPKLDFLHLQGDIGPRQVS
PVLSLLRGGACPMLSMVKLERSLRSTLGEDECGAEDAAQSMFDLVISDHI
PHLREVHALGMALNEGMEKANEAGRDSAFYRARNHSTWHHLAVAGKARGV
QVFV

mRNA from alignment at Scaffold_499:549373..552436-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft309_9a-0001 ID=EsuBft309_9a-0001|Name=EsuBft309_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3064bp|location=Sequence derived from alignment at Scaffold_499:549373..552436- (Ectocarpus subulatus male Bft15b)
ATGGAGACCCGTCGAATGCGCGCGAAGGAAAAGCAGCACACCAAATCCGG
ACGGGCCGGGCTTCGCTCCTCCCCCCGCCGCGCAAGAGGAGACGCTAGAA
ACAACAAGCCGAGGGGCTGCGATGCGGATCTCCCACACCACGTCGTGCTG
GAAATCGTGTCCTTCCTGGACACCCGGTCCATCGTAGGTGGCCGGTGCTT
GTCTCGCGCGTTTAGGAACGACGCACCGGCGCTGGTCAAGACGCTGGACT
TCCACATGGGGCAGCAGTCTCCATCCGCCGAAACGATCAAGCTGTTCCCT
GAGGTCAGGCAGGTCAACCTCGACGGCAACCGAGACCTGGTTCACGCGGT
GGTCGCAGGGCTCCGCGGGTGGGGGTCCTCACTGCGCCTCGGCGTTTCCC
TTCACGACTCCGTCCCACAGAAGGAGGAGCCGCTGAGCAACACGGCCACC
GCCGACCTGTGTGCGTTGCCGCTGACCGAGCTCGACATGAAGGAGGTCGT
TGTCGAGTTCCCGCCGTCGCTTCCGATGAACGCCTGGCGAACGCTGCAGA
GGCTCGTGATCCGCGACGCCTTCCTCGGGGACGAGTCCCTGGAGAGCCTG
TCCAAGTCCATCCCTGAGGGTCCCCTACCGCTGCGCCATCTTGACCTCTC
CAGAAACCTCTTCGGGGGCTACGACGCCGTGTTGCCCTTCGCAGGCGCGC
TCCGGTCCTTCCCCGACCTGGAGTGGCTCGAGCTCACGGCGTGCCGCATC
TGTCGCGGCTCGGGTGACTGCATCGTCCGCACGCTGCTCGAGGGCGCCTG
CCCGAAGCTCAGGACCCTGGACCTCTCCCTCAACTTCTTCACGAACGGCC
TCCTCGCGTCCCTGTGCGAAGGGCTGGGGGCGCCGGGGCACGGGCTGCTC
AACCTGCGGAAGCTGGGCTTCGGCTCACGGGTCACCGGCGACGAGATGAT
AACTTGCTTCGAGAAGGTCGGGAAGGCCCTCGCCGCCGGCGGCCTGCCCA
AGCTGGACTTCCTCCACCTTCAGGGCGACATAGGGCCGCGGCAGGTCTCC
CCGGTGCTGAGCCTGTTGAGGGGCGGGGCGTGCCCGATGCTGTCGATGGT
GAAGCTGGAGCGTTCTCTCCGCTCCACGCTTGGCGAGGACGAGTGCGGCG
CCGAGGACGCCGCACAGAGCATGTTCGACCTGGTGATTTCGGACCACATC
CCGCACCTCCGGGAGGTGCACGCGCTGGGCATGGCCCTGAACGAGGGGAT
GGAAAAAGCAAATGAGGCGGGGCGTGACTCGGCATTCTACAGGGCCAGGA
ACCATTCAACCTGGCACCATCTCGCCGTCGCGGGCAAGGCTAGAGGTGTC
CAGGTGTTTGTGTAATGACCTTCTCTGTAGCTTAGAATAGATGCGGTAAT
CGAGTGACGTCTTTCGTAAGCGTAGATTCGGTGGGTGATAAGTGCGGTAG
TTGATTTGCTCGATGATACTCATATATGCGCGTTGGGTATTTCGTGTCTG
CTGTCTCCTGCTGTCAACCCCCACAACAATCTCGGTCTGTTAAGCTCAGA
ATTCAAACACGGATCGAGTATGTTTTCATATTTTTCATCGCAGAACTTTG
CAACTGTGAACAAGTAACGAGCTATCTCCTTTAGTTTTGGGCACGGTTTT
TTTTTTTTTTCGCCAGCTTTCGGAGCTTCAACTCGTGGGCTGGGAGCGCC
GTGAGATAGCGCTCAGCCCTTGTTTTTTCTGTTTGCGTCTTGCGTGGGCC
GTGGGCCGCAGCAGTCACGGCTTCCACGGCGTGTTCGTGTGGCGGGGTTT
AGACCTTTCTTTCTTTGCCGATACATCGTCTCCCGCAGCTAGCTGCAGAT
CGGCTTTCCGTAGGCACAGTTTGATCGCGTTAGAATGTTTCACGGCGTGT
GTTCTCGCCGCTCGTGGTAAACGCCCGGTGCTGTCTGTGTGTCTTGTCCT
TTTCAGAAGGGCCAGCGTAGCATGCCATCGTTTTGTACATGTGGTGTACG
CGCCTTACTTGCAGGAGCAACGTTGTGTCTTGCGGGACAGGTTCTCTGTG
TTGGCAAGGACCACTGCACCGCTGTATATATATATGTATGTATCTGTTTC
ATGTTGTTTGGTTTGTTGAACTCTGTGGCGTGTCGTTTGCCCCTGTACAG
TAACCTGTGGAACGATCATAGTCGGAGTGCAGCAAACTGCCGAGCGACGG
TCTGGGCGCTTGAAATTAGCTGGAGTGCCGGCATAGATGTCAGCGGTATC
TGCTGTTGCCGTCCTTGACGTGCGCCCAGAACGTGTTGTGGAGATGCTGC
ATGCCGCTTGCCGGGGCCTTTTAAACTGCCCTTTCGTGTTACATCCAAGA
AGGGACGCCTATTGTAGGACATAATGAAGCTCGTCTGAAGTAGGTGGGGA
AGCAATAACCAGATGTCTCGAGTGCTTTGTAGCGACAATTAAATGCCGTC
CGATTTTTTTATTGCGTGTTCGCTGCTCGTTGGCGACCGGAACAAACCGA
GAAAGCAGCTGTGTTTTTGAGGGAGAGGGGGTGTTCTCGGCTCTGTTAAG
CTAGCAATGCTCATTCGGAGTGGTTGGTGGAACTGGTTTGTGGATATATC
CTACGGGAGACCGGGACGATTTTCTTTTGTGAAGATAAAACAGCATAGGA
GTGTTGAGCGGACTAGTTGAGCCTCGTGTTATTTTTGAACAAGAGAGCGC
ACATGGTGACCGATTCCCAACTGGTGTGAGGGACTGTGGGTCGGTGGCCT
AGTGAGTGTTAGAGTTTTGCGGCATCCGCATCCTATGCATCGGAGCGGAC
GAACGAACGCAGATGACTCGCGTGTTTGGTGGCTAGCGACGAGAGAATCA
TGGCTCTGCTGTGTGGTGCGCAGTTTAGGATCAAGAAGATTCATCTGCTT
CGAGCAAGCAAACGATTTCTCGGACGGAATCATTCAAACGTTGCAGTTGG
CGTACACACCGCTGTATTTGCGCAAACGTTTGGGGATTATTTTAGCTTCA
TCGCTTGCGGCGAAATCGAACACGGCGAATGCCGCCTTCAATCCGTTTGC
ATTAATATATATTT

Coding sequence (CDS) from alignment at Scaffold_499:549373..552436-

>EsuBft309_9a-0001 ID=EsuBft309_9a-0001|Name=EsuBft309_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1365bp|location=Sequence derived from alignment at Scaffold_499:549373..552436- (Ectocarpus subulatus male Bft15b)
ATGGAGACCCGTCGAATGCGCGCGAAGGAAAAGCAGCACACCAAATCCGG
ACGGGCCGGGCTTCGCTCCTCCCCCCGCCGCGCAAGAGGAGACGCTAGAA
ACAACAAGCCGAGGGGCTGCGATGCGGATCTCCCACACCACGTCGTGCTG
GAAATCGTGTCCTTCCTGGACACCCGGTCCATCGTAGGTGGCCGGTGCTT
GTCTCGCGCGTTTAGGAACGACGCACCGGCGCTGGTCAAGACGCTGGACT
TCCACATGGGGCAGCAGTCTCCATCCGCCGAAACGATCAAGCTGTTCCCT
GAGGTCAGGCAGGTCAACCTCGACGGCAACCGAGACCTGGTTCACGCGGT
GGTCGCAGGGCTCCGCGGGTGGGGGTCCTCACTGCGCCTCGGCGTTTCCC
TTCACGACTCCGTCCCACAGAAGGAGGAGCCGCTGAGCAACACGGCCACC
GCCGACCTGTGTGCGTTGCCGCTGACCGAGCTCGACATGAAGGAGGTCGT
TGTCGAGTTCCCGCCGTCGCTTCCGATGAACGCCTGGCGAACGCTGCAGA
GGCTCGTGATCCGCGACGCCTTCCTCGGGGACGAGTCCCTGGAGAGCCTG
TCCAAGTCCATCCCTGAGGGTCCCCTACCGCTGCGCCATCTTGACCTCTC
CAGAAACCTCTTCGGGGGCTACGACGCCGTGTTGCCCTTCGCAGGCGCGC
TCCGGTCCTTCCCCGACCTGGAGTGGCTCGAGCTCACGGCGTGCCGCATC
TGTCGCGGCTCGGGTGACTGCATCGTCCGCACGCTGCTCGAGGGCGCCTG
CCCGAAGCTCAGGACCCTGGACCTCTCCCTCAACTTCTTCACGAACGGCC
TCCTCGCGTCCCTGTGCGAAGGGCTGGGGGCGCCGGGGCACGGGCTGCTC
AACCTGCGGAAGCTGGGCTTCGGCTCACGGGTCACCGGCGACGAGATGAT
AACTTGCTTCGAGAAGGTCGGGAAGGCCCTCGCCGCCGGCGGCCTGCCCA
AGCTGGACTTCCTCCACCTTCAGGGCGACATAGGGCCGCGGCAGGTCTCC
CCGGTGCTGAGCCTGTTGAGGGGCGGGGCGTGCCCGATGCTGTCGATGGT
GAAGCTGGAGCGTTCTCTCCGCTCCACGCTTGGCGAGGACGAGTGCGGCG
CCGAGGACGCCGCACAGAGCATGTTCGACCTGGTGATTTCGGACCACATC
CCGCACCTCCGGGAGGTGCACGCGCTGGGCATGGCCCTGAACGAGGGGAT
GGAAAAAGCAAATGAGGCGGGGCGTGACTCGGCATTCTACAGGGCCAGGA
ACCATTCAACCTGGCACCATCTCGCCGTCGCGGGCAAGGCTAGAGGTGTC
CAGGTGTTTGTGTAA