EsuBft309_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft309_4a-0001
Unique NameEsuBft309_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:469662..470645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LFI4
ProteomeIdEsuBft309_4
Protein domainsPTHR23274
Protein domainsIPR027417
Ownerapollo_admin@sb-roscoff.fr
Noteatp-dependent dna helicase pif1 os:candida albicans (strain sc5314 atcc mya-2876) gn:pif1 pe:3 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length546
Hectar predicted targeting categoryother localisation
Evalue1.87e-27
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Descriptionregulation of response to stimulus
COG categoryU
Cross References
External references for this mRNA
DatabaseAccession
GO0005657
GO0000002
GO0005724
GO0097046
GO0044806
GO0097159
GO1901363
GO0004003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft309_4aEsuBft309_4aEctocarpus subulatus male Bft15bgeneScaffold_499 469662..470645 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft309_4a-0001-exonagat-exon-22017Ectocarpus subulatus male Bft15bexonScaffold_499 469662..469679 +
EsuBft309_4a-0001-exonagat-exon-22018Ectocarpus subulatus male Bft15bexonScaffold_499 469726..470050 +
EsuBft309_4a-0001-exonEsuBft309_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 470443..470645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft309_4a-0001-cdsEsuBft309_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 469662..469679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft309_4a-0001EsuBft309_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 469662..470645 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft309_4a-0001 ID=EsuBft309_4a-0001|Name=EsuBft309_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=546bp|location=Sequence derived from alignment at Scaffold_499:469662..470645+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTCTCAGGAGAGGACGGGGGGACGCAGGTCAGGACGCAGCTGCC
CCTTAGGCTCTGCTGGGCAATTACGATGCACAAGTCCCAGGGGCAGACTT
TAGCCAAGGCCGTCATTGACTTGGGGCCCAAGGAGGCCTGCACGGGGCTT
ACTTTCGTCTGTCTCAGTAGGGCGAAGAGACTTGTGGACCTCATGGTAGA
GCCCATGAGTTTCGACAGGATTGGTAACCTTGGAAATTCGCCGACGATGA
AGGCTAGGCTGCAGGAAGAGGTTAGACTTGGGGAGTTAGCACAGAGTACG
AGGGTCAAGTACACGGACATGGGCGTCTTCAGCGCCGTCGCGGAGACGGA
TCGTGAAGCACTTGCCGCCCTTTCTCTGTGGACCGGCAGCCGTTGGAGGG
CAGATGCATACTGGGACACAGACTATCATATTGGGTCGTGGTATGGGGTC
CAAGCAAACGATGAGCGCCGCATTGAGCGGCTGGAGCTAGGAAGCAACAA
CCTTCGAGGTATTTTTGTTCACAGGGGAACTGCTACTGCTGTCTAG
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protein sequence of EsuBft309_4a-0001

>EsuBft309_4 ID=EsuBft309_4|Name=EsuBft309_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=181bp
MVVSGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGL
TFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST
RVKYTDMGVFSAVAETDREALAALSLWTGSRWRADAYWDTDYHIGSWYGV
QANDERRIERLELGSNNLRGIFVHRGTATAV
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mRNA from alignment at Scaffold_499:469662..470645+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft309_4a-0001 ID=EsuBft309_4a-0001|Name=EsuBft309_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=984bp|location=Sequence derived from alignment at Scaffold_499:469662..470645+ (Ectocarpus subulatus male Bft15b)
ATGGTCGTCTCAGGAGAGGTATAGACGTTGTGTCCCTATTTCTCCCGTCG
ACACCACCTGGCAGGACGGGGGGACGCAGGTCAGGACGCAGCTGCCCCTT
AGGCTCTGCTGGGCAATTACGATGCACAAGTCCCAGGGGCAGACTTTAGC
CAAGGCCGTCATTGACTTGGGGCCCAAGGAGGCCTGCACGGGGCTTACTT
TCGTCTGTCTCAGTAGGGCGAAGAGACTTGTGGACCTCATGGTAGAGCCC
ATGAGTTTCGACAGGATTGGTAACCTTGGAAATTCGCCGACGATGAAGGC
TAGGCTGCAGGAAGAGGTTAGACTTGGGGAGTTAGCACAGAGTACGAGGG
TCAAGTACACGGACATGGGCGTCTTCAGCGCCGTCGCGGGTAACCAATGA
CGTGAATTGCAAAGAGAAAAAGAAGAAGAAAGGGTCTCTTCCACCTCCCG
CGGACGCACACGTCTGACGACAGTTACATCTATCAGCTGTCGCTCGTTTT
AGCGACAGCTACTATATCTTACAACCCTGGCAGGGTCGACACCCTGACAG
GGTTCCTGCCCGTGGACCTTGTGGGGACCGCCGATTACCCTGTCACAGCG
TCCGTACAGGGTCTATTTGCCTGCAAGGTCCGCACAGGGTGAGCCAAATG
GCTACGGGTGCAGCAGCAGTTGTTTGAGACCTGCGAGGTAGTTCTTCCAG
AGCAACAGCCGGTCTTTTCTTGCTCTACTCAGCTTCGCCCCGTTGTGGAT
GTCACAAATGTTAATGTATTCTTTGGAGCAGAGACGGATCGTGAAGCACT
TGCCGCCCTTTCTCTGTGGACCGGCAGCCGTTGGAGGGCAGATGCATACT
GGGACACAGACTATCATATTGGGTCGTGGTATGGGGTCCAAGCAAACGAT
GAGCGCCGCATTGAGCGGCTGGAGCTAGGAAGCAACAACCTTCGAGGTAT
TTTTGTTCACAGGGGAACTGCTACTGCTGTCTAG
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Coding sequence (CDS) from alignment at Scaffold_499:469662..470645+

>EsuBft309_4a-0001 ID=EsuBft309_4a-0001|Name=EsuBft309_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=546bp|location=Sequence derived from alignment at Scaffold_499:469662..470645+ (Ectocarpus subulatus male Bft15b)
ATGGTCGTCTCAGGAGAGGACGGGGGGACGCAGGTCAGGACGCAGCTGCC
CCTTAGGCTCTGCTGGGCAATTACGATGCACAAGTCCCAGGGGCAGACTT
TAGCCAAGGCCGTCATTGACTTGGGGCCCAAGGAGGCCTGCACGGGGCTT
ACTTTCGTCTGTCTCAGTAGGGCGAAGAGACTTGTGGACCTCATGGTAGA
GCCCATGAGTTTCGACAGGATTGGTAACCTTGGAAATTCGCCGACGATGA
AGGCTAGGCTGCAGGAAGAGGTTAGACTTGGGGAGTTAGCACAGAGTACG
AGGGTCAAGTACACGGACATGGGCGTCTTCAGCGCCGTCGCGGAGACGGA
TCGTGAAGCACTTGCCGCCCTTTCTCTGTGGACCGGCAGCCGTTGGAGGG
CAGATGCATACTGGGACACAGACTATCATATTGGGTCGTGGTATGGGGTC
CAAGCAAACGATGAGCGCCGCATTGAGCGGCTGGAGCTAGGAAGCAACAA
CCTTCGAGGTATTTTTGTTCACAGGGGAACTGCTACTGCTGTCTAG
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