EsuBft309_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft309_10a-0001
Unique NameEsuBft309_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:552711..554455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LFI9
ProteomeIdEsuBft309_10
Protein domainsPTHR16038
Protein domainsIPR011047
Protein domainsIPR001680
Protein domainsIPR017986
Protein domainsIPR015943
Ownerapollo_admin@sb-roscoff.fr
Notewd repeat-containing protein 74 os:homo sapiens gn:wdr74 pe:1 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length1745
Hectar predicted targeting categoryother localisation
Evalue1e-256
EggNOG OGsKOG3881@1|root,KOG3881@2759|Eukaryota
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-04_002020.1
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameWDR74
KEGG koko:K14841
GOsGO:0001701,GO:0001824,GO:0001825,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009653,GO:0009790,GO:0009792,GO:0009987,GO:0016070,GO:0019725,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0042254,GO:0042273,GO:0042592,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046716,GO:0048646,GO:0048856,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Descriptionribosomal large subunit biogenesis
COG categoryD
BRITEko00000,ko03009
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0005515
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft309_10aEsuBft309_10aEctocarpus subulatus male Bft15bgeneScaffold_499 552711..554455 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft309_10a-0001-exonEsuBft309_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 552711..554455 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft309_10a-0001-exonagat-five_prime_utr-7775Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 552711..552819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft309_10a-0001-cdsEsuBft309_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 552820..554346 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft309_10a-0001-exonagat-three_prime_utr-12266Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 554347..554455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft309_10a-0001EsuBft309_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 552820..554346 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft309_10a-0001 ID=EsuBft309_10a-0001|Name=EsuBft309_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1745bp|location=Sequence derived from alignment at Scaffold_499:552711..554455+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCGTGAGTGCAAGGCAGGCACTACTGCTGCTGTGTGGTGTTCCAGCCGAG
CCCTCTGTCACCACTCATATCATAGGTGTAACGCTGTCGACGTTTGCTCT
TCGCCGACCATGCGAATCATCACAGCGGACGAGACGGGCCTTGTGAAGGT
GGTGCGGTTGGAGAGCGGCGAGTGCTTGGCGGTCAGCCCAGGAGAGCAAG
CACGAGCCAACGCTGTCCGCGCGGTTTGCTTCGACCACGCGGCAGCCGCC
GCGAGCGGCCACCGGGCTTCCGGCGACTTCTTCGCAAGGATCCACGTCGC
CCGTGTCGCAGGTGCCGTCGAAACCTGGGACGTGTCGCAGTCGGAGCGGG
ACGGGAAAGCCGGCGGCTGCGCGCTCAGCGCTTGTGGGACTGCTGTGGAG
TGCGCCGCTGCTCCAGTGGCCCTGGCCTGCCTCCCGCCGGCCTCGTCCAG
CAGCAGCGAGTCTTCCCGCGTCCTGACCTGCAACGGAGAGGGAGAGGTGC
AAGTATTCCGCGCTGCTCCCGACAGCAGGTCGAAGGACGAGGCGGGACGG
ACGACGTTGTCCATCCGCGGACCAGTCAGCGCCGCCGTCGCCGACGGGGA
CGGCGGGTCGGGGCTTGCGCTTGCCGCCGGAGGTAGGGAGAACGACCTCA
AAACGTGGGACTTGAGCACCGGCAAGTGCACCTGGAAGGCGAAGAACGTG
CCCCACGATTTCCTGGACATGCGGCAGCCGGTGTGGATAACCTCACTCTG
TCCGCTGGCGGCGGCAACCGGCGGAGGCGGAGGCGGCGGCGGCGGGTTGC
AGCAAATGGTCGCGGGAACGGCGCACCGACAGGTACGCCTCTACGACGCC
CGCGCGCAAAAGCGACCAACGCACTCCGTCGACGCCGACGAGCACGGCGT
CACGACCATGGCCGTCGCCCCGGACGGGAGGGAGGTGGTCGTGGCGGACA
CCGCCGGGCTCGTTCGCGTGCTGGACCTCCGGAAGATGAAGTGGGGTCGG
CGGTTCGAGGGGCCGGCGGGGTCGGTGCGAGGCCTTGCGTTCCACCCGAC
CCTGCCGGTGCTCGCCTGCGTCGGCCTGGACCGCATGGCCAGGGTCTACG
GCTACCACTCGCGGGAGCAGAAGTTCCAGGTCTACCTCAAGCAGAGGCTT
AACGCCGTGCTCTTCGATGGGGAGGAAGGGGAGGTTCATGTCGCTGCAGA
CGGCGAGGATGGCGAAAAGAAGAAAAACGGCGCCAAGGACGGCGCCGGCG
AGGATTGGTCGGGGAGCGAGGGGTGGGGTTCCGGAGAGGAGTACGAGATG
GACGAAGCGGACAGCTCTGATGATGATGACGAGGAGGAGGAGGAGAGGGA
AGATTCGCGGCGGCGAACGGCAACAACGAGAGTTTCGGTCGTGGCGAACG
GGGGAAAACCGACCGGTGGAGAGGAAGACGGGGCGGGGGAGAGTGGCGAG
GAAGAAGAGAGTAGCGAGGAAGAGAGCGTGGATGACGAAGTAGATGCAAG
GGCTGGGAGCGAGGGTGGGAGTAGTAGTGACGACGACGAGAGCGAGGAAA
GCGAAGAGGAGGCGAAGCCGCCACCGACGAAACGGCGGCAAGTTCAGAGA
ACTACGGCCTCTGCAAAAAAGCCAAGTAGACGATGATGATGGTAAAGATA
AAGCGATTCTAGGTAGCAATTTCTAGCTTTTGGGGGCAGCAGAGGGTGTG
CGTGTGTTTTGCTGTTGTATAACGGTAACCAATGATATTGCTATG
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protein sequence of EsuBft309_10a-0001

>EsuBft309_10 ID=EsuBft309_10|Name=EsuBft309_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=508bp
MRIITADETGLVKVVRLESGECLAVSPGEQARANAVRAVCFDHAAAAASG
HRASGDFFARIHVARVAGAVETWDVSQSERDGKAGGCALSACGTAVECAA
APVALACLPPASSSSSESSRVLTCNGEGEVQVFRAAPDSRSKDEAGRTTL
SIRGPVSAAVADGDGGSGLALAAGGRENDLKTWDLSTGKCTWKAKNVPHD
FLDMRQPVWITSLCPLAAATGGGGGGGGGLQQMVAGTAHRQVRLYDARAQ
KRPTHSVDADEHGVTTMAVAPDGREVVVADTAGLVRVLDLRKMKWGRRFE
GPAGSVRGLAFHPTLPVLACVGLDRMARVYGYHSREQKFQVYLKQRLNAV
LFDGEEGEVHVAADGEDGEKKKNGAKDGAGEDWSGSEGWGSGEEYEMDEA
DSSDDDDEEEEEREDSRRRTATTRVSVVANGGKPTGGEEDGAGESGEEEE
SSEEESVDDEVDARAGSEGGSSSDDDESEESEEEAKPPPTKRRQVQRTTA
SAKKPSRR
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mRNA from alignment at Scaffold_499:552711..554455+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft309_10a-0001 ID=EsuBft309_10a-0001|Name=EsuBft309_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1745bp|location=Sequence derived from alignment at Scaffold_499:552711..554455+ (Ectocarpus subulatus male Bft15b)
GCGTGAGTGCAAGGCAGGCACTACTGCTGCTGTGTGGTGTTCCAGCCGAG
CCCTCTGTCACCACTCATATCATAGGTGTAACGCTGTCGACGTTTGCTCT
TCGCCGACCATGCGAATCATCACAGCGGACGAGACGGGCCTTGTGAAGGT
GGTGCGGTTGGAGAGCGGCGAGTGCTTGGCGGTCAGCCCAGGAGAGCAAG
CACGAGCCAACGCTGTCCGCGCGGTTTGCTTCGACCACGCGGCAGCCGCC
GCGAGCGGCCACCGGGCTTCCGGCGACTTCTTCGCAAGGATCCACGTCGC
CCGTGTCGCAGGTGCCGTCGAAACCTGGGACGTGTCGCAGTCGGAGCGGG
ACGGGAAAGCCGGCGGCTGCGCGCTCAGCGCTTGTGGGACTGCTGTGGAG
TGCGCCGCTGCTCCAGTGGCCCTGGCCTGCCTCCCGCCGGCCTCGTCCAG
CAGCAGCGAGTCTTCCCGCGTCCTGACCTGCAACGGAGAGGGAGAGGTGC
AAGTATTCCGCGCTGCTCCCGACAGCAGGTCGAAGGACGAGGCGGGACGG
ACGACGTTGTCCATCCGCGGACCAGTCAGCGCCGCCGTCGCCGACGGGGA
CGGCGGGTCGGGGCTTGCGCTTGCCGCCGGAGGTAGGGAGAACGACCTCA
AAACGTGGGACTTGAGCACCGGCAAGTGCACCTGGAAGGCGAAGAACGTG
CCCCACGATTTCCTGGACATGCGGCAGCCGGTGTGGATAACCTCACTCTG
TCCGCTGGCGGCGGCAACCGGCGGAGGCGGAGGCGGCGGCGGCGGGTTGC
AGCAAATGGTCGCGGGAACGGCGCACCGACAGGTACGCCTCTACGACGCC
CGCGCGCAAAAGCGACCAACGCACTCCGTCGACGCCGACGAGCACGGCGT
CACGACCATGGCCGTCGCCCCGGACGGGAGGGAGGTGGTCGTGGCGGACA
CCGCCGGGCTCGTTCGCGTGCTGGACCTCCGGAAGATGAAGTGGGGTCGG
CGGTTCGAGGGGCCGGCGGGGTCGGTGCGAGGCCTTGCGTTCCACCCGAC
CCTGCCGGTGCTCGCCTGCGTCGGCCTGGACCGCATGGCCAGGGTCTACG
GCTACCACTCGCGGGAGCAGAAGTTCCAGGTCTACCTCAAGCAGAGGCTT
AACGCCGTGCTCTTCGATGGGGAGGAAGGGGAGGTTCATGTCGCTGCAGA
CGGCGAGGATGGCGAAAAGAAGAAAAACGGCGCCAAGGACGGCGCCGGCG
AGGATTGGTCGGGGAGCGAGGGGTGGGGTTCCGGAGAGGAGTACGAGATG
GACGAAGCGGACAGCTCTGATGATGATGACGAGGAGGAGGAGGAGAGGGA
AGATTCGCGGCGGCGAACGGCAACAACGAGAGTTTCGGTCGTGGCGAACG
GGGGAAAACCGACCGGTGGAGAGGAAGACGGGGCGGGGGAGAGTGGCGAG
GAAGAAGAGAGTAGCGAGGAAGAGAGCGTGGATGACGAAGTAGATGCAAG
GGCTGGGAGCGAGGGTGGGAGTAGTAGTGACGACGACGAGAGCGAGGAAA
GCGAAGAGGAGGCGAAGCCGCCACCGACGAAACGGCGGCAAGTTCAGAGA
ACTACGGCCTCTGCAAAAAAGCCAAGTAGACGATGATGATGGTAAAGATA
AAGCGATTCTAGGTAGCAATTTCTAGCTTTTGGGGGCAGCAGAGGGTGTG
CGTGTGTTTTGCTGTTGTATAACGGTAACCAATGATATTGCTATG
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Coding sequence (CDS) from alignment at Scaffold_499:552711..554455+

>EsuBft309_10a-0001 ID=EsuBft309_10a-0001|Name=EsuBft309_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1527bp|location=Sequence derived from alignment at Scaffold_499:552711..554455+ (Ectocarpus subulatus male Bft15b)
ATGCGAATCATCACAGCGGACGAGACGGGCCTTGTGAAGGTGGTGCGGTT
GGAGAGCGGCGAGTGCTTGGCGGTCAGCCCAGGAGAGCAAGCACGAGCCA
ACGCTGTCCGCGCGGTTTGCTTCGACCACGCGGCAGCCGCCGCGAGCGGC
CACCGGGCTTCCGGCGACTTCTTCGCAAGGATCCACGTCGCCCGTGTCGC
AGGTGCCGTCGAAACCTGGGACGTGTCGCAGTCGGAGCGGGACGGGAAAG
CCGGCGGCTGCGCGCTCAGCGCTTGTGGGACTGCTGTGGAGTGCGCCGCT
GCTCCAGTGGCCCTGGCCTGCCTCCCGCCGGCCTCGTCCAGCAGCAGCGA
GTCTTCCCGCGTCCTGACCTGCAACGGAGAGGGAGAGGTGCAAGTATTCC
GCGCTGCTCCCGACAGCAGGTCGAAGGACGAGGCGGGACGGACGACGTTG
TCCATCCGCGGACCAGTCAGCGCCGCCGTCGCCGACGGGGACGGCGGGTC
GGGGCTTGCGCTTGCCGCCGGAGGTAGGGAGAACGACCTCAAAACGTGGG
ACTTGAGCACCGGCAAGTGCACCTGGAAGGCGAAGAACGTGCCCCACGAT
TTCCTGGACATGCGGCAGCCGGTGTGGATAACCTCACTCTGTCCGCTGGC
GGCGGCAACCGGCGGAGGCGGAGGCGGCGGCGGCGGGTTGCAGCAAATGG
TCGCGGGAACGGCGCACCGACAGGTACGCCTCTACGACGCCCGCGCGCAA
AAGCGACCAACGCACTCCGTCGACGCCGACGAGCACGGCGTCACGACCAT
GGCCGTCGCCCCGGACGGGAGGGAGGTGGTCGTGGCGGACACCGCCGGGC
TCGTTCGCGTGCTGGACCTCCGGAAGATGAAGTGGGGTCGGCGGTTCGAG
GGGCCGGCGGGGTCGGTGCGAGGCCTTGCGTTCCACCCGACCCTGCCGGT
GCTCGCCTGCGTCGGCCTGGACCGCATGGCCAGGGTCTACGGCTACCACT
CGCGGGAGCAGAAGTTCCAGGTCTACCTCAAGCAGAGGCTTAACGCCGTG
CTCTTCGATGGGGAGGAAGGGGAGGTTCATGTCGCTGCAGACGGCGAGGA
TGGCGAAAAGAAGAAAAACGGCGCCAAGGACGGCGCCGGCGAGGATTGGT
CGGGGAGCGAGGGGTGGGGTTCCGGAGAGGAGTACGAGATGGACGAAGCG
GACAGCTCTGATGATGATGACGAGGAGGAGGAGGAGAGGGAAGATTCGCG
GCGGCGAACGGCAACAACGAGAGTTTCGGTCGTGGCGAACGGGGGAAAAC
CGACCGGTGGAGAGGAAGACGGGGCGGGGGAGAGTGGCGAGGAAGAAGAG
AGTAGCGAGGAAGAGAGCGTGGATGACGAAGTAGATGCAAGGGCTGGGAG
CGAGGGTGGGAGTAGTAGTGACGACGACGAGAGCGAGGAAAGCGAAGAGG
AGGCGAAGCCGCCACCGACGAAACGGCGGCAAGTTCAGAGAACTACGGCC
TCTGCAAAAAAGCCAAGTAGACGATGA
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