EsuBft3093_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3093_3a-0001
Unique NameEsuBft3093_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_442contigScaffold_442:76148..76789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3093_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length64
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3093_3aEsuBft3093_3aEctocarpus subulatus male Bft15bgeneScaffold_442 76148..76789 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3093_3a-0001-exonEsuBft3093_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_442 76148..76789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3093_3a-0001-cdsEsuBft3093_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_442 76148..76630 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3093_3a-0001-exonagat-three_prime_utr-12256Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_442 76631..76789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3093_3a-0001EsuBft3093_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_442 76148..76630 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3093_3a-0001 ID=EsuBft3093_3a-0001|Name=EsuBft3093_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=642bp|location=Sequence derived from alignment at Scaffold_442:76148..76789+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGAGGTGCAGGAGATGATGGGCATGCTGCCATCGCTACTGCAGGC
CGAGTCGGAAGGACAAGGCCAGGAGGGGTCGGCGGCGCTGCAAGAGGGCG
CCGCGGGTGCGGCGGCATTGGGGGTTCCGCCGAGCAGTCATCGAGAGCTG
TGTCCTGCGGTGGTCGTCAGGGAGGGTGACACTGCTGGAGGAGAGAGCAG
CAGTAGGCCGGGCGTGGAAGGCGCCCTGGTGCGGGATGTGGAGGTCCCTG
CTGCAGGTGGGTTTGGTGCATTCCAAGACACCAACTCTCTTCGTAGTACG
TTCGGCAGTGCTTGCATACAGCAGTCTGCTGCCGCTGGAGACACTGGTGA
GAGTGTCACAGCAACCAATCAATCCATTCAGGGAAGGTCGGGTGGAGAAT
GCGGCACGGCGGAAGGGTCGTGTCCACTGTTCTGCCTTGCTGTAGTAGCG
GGCGGGGCGCACAGAAGTCGCCGGAATAATTGATGGTGCAACAGAACGGA
CGGAGGGGCCGTGAAGACGCGTAGTTTCGGCGCGCATTCCATCTGCGGTA
AGGCGGTGGAGCACCAGGACGGTAGAGAGACCGTTGGGCAGGATTGCCGG
AGACACTCAACCATGGATCGACCGCGCGACGGCGCGGGGGGG
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protein sequence of EsuBft3093_3a-0001

>EsuBft3093_3 ID=EsuBft3093_3|Name=EsuBft3093_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=160bp
MTEVQEMMGMLPSLLQAESEGQGQEGSAALQEGAAGAAALGVPPSSHREL
CPAVVVREGDTAGGESSSRPGVEGALVRDVEVPAAGGFGAFQDTNSLRST
FGSACIQQSAAAGDTGESVTATNQSIQGRSGGECGTAEGSCPLFCLAVVA
GGAHRSRRNN
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mRNA from alignment at Scaffold_442:76148..76789+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3093_3a-0001 ID=EsuBft3093_3a-0001|Name=EsuBft3093_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=642bp|location=Sequence derived from alignment at Scaffold_442:76148..76789+ (Ectocarpus subulatus male Bft15b)
ATGACAGAGGTGCAGGAGATGATGGGCATGCTGCCATCGCTACTGCAGGC
CGAGTCGGAAGGACAAGGCCAGGAGGGGTCGGCGGCGCTGCAAGAGGGCG
CCGCGGGTGCGGCGGCATTGGGGGTTCCGCCGAGCAGTCATCGAGAGCTG
TGTCCTGCGGTGGTCGTCAGGGAGGGTGACACTGCTGGAGGAGAGAGCAG
CAGTAGGCCGGGCGTGGAAGGCGCCCTGGTGCGGGATGTGGAGGTCCCTG
CTGCAGGTGGGTTTGGTGCATTCCAAGACACCAACTCTCTTCGTAGTACG
TTCGGCAGTGCTTGCATACAGCAGTCTGCTGCCGCTGGAGACACTGGTGA
GAGTGTCACAGCAACCAATCAATCCATTCAGGGAAGGTCGGGTGGAGAAT
GCGGCACGGCGGAAGGGTCGTGTCCACTGTTCTGCCTTGCTGTAGTAGCG
GGCGGGGCGCACAGAAGTCGCCGGAATAATTGATGGTGCAACAGAACGGA
CGGAGGGGCCGTGAAGACGCGTAGTTTCGGCGCGCATTCCATCTGCGGTA
AGGCGGTGGAGCACCAGGACGGTAGAGAGACCGTTGGGCAGGATTGCCGG
AGACACTCAACCATGGATCGACCGCGCGACGGCGCGGGGGGG
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Coding sequence (CDS) from alignment at Scaffold_442:76148..76789+

>EsuBft3093_3a-0001 ID=EsuBft3093_3a-0001|Name=EsuBft3093_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=483bp|location=Sequence derived from alignment at Scaffold_442:76148..76789+ (Ectocarpus subulatus male Bft15b)
ATGACAGAGGTGCAGGAGATGATGGGCATGCTGCCATCGCTACTGCAGGC
CGAGTCGGAAGGACAAGGCCAGGAGGGGTCGGCGGCGCTGCAAGAGGGCG
CCGCGGGTGCGGCGGCATTGGGGGTTCCGCCGAGCAGTCATCGAGAGCTG
TGTCCTGCGGTGGTCGTCAGGGAGGGTGACACTGCTGGAGGAGAGAGCAG
CAGTAGGCCGGGCGTGGAAGGCGCCCTGGTGCGGGATGTGGAGGTCCCTG
CTGCAGGTGGGTTTGGTGCATTCCAAGACACCAACTCTCTTCGTAGTACG
TTCGGCAGTGCTTGCATACAGCAGTCTGCTGCCGCTGGAGACACTGGTGA
GAGTGTCACAGCAACCAATCAATCCATTCAGGGAAGGTCGGGTGGAGAAT
GCGGCACGGCGGAAGGGTCGTGTCCACTGTTCTGCCTTGCTGTAGTAGCG
GGCGGGGCGCACAGAAGTCGCCGGAATAATTGA
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