EsuBft3093_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3093_2a-0001
Unique Name	EsuBft3093_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_442	contig	Scaffold_442:68095..69417 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	126957.SMAR002230-PA
ProteomeId	EsuBft3093_2
Protein domains	SignalP-TM
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	132
Hectar predicted targeting category	mitochondrion
Evalue	9.44e-06
EggNOG OGs	KOG3105@1\|root,KOG3105@2759\|Eukaryota,38I47@33154\|Opisthokonta,3BMCH@33208\|Metazoa,3CYY1@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	POGK
Description	pogo transposable element with KRAB domain
COG category	BD

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3093_2a	EsuBft3093_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_442 68095..69417 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3093_2a-0001-exon	EsuBft3093_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_442 68095..69417 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3093_2a-0001-cds	EsuBft3093_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_442 68095..68379 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3093_2a-0001-exon	agat-three_prime_utr-12255	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_442 68380..69417 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3093_2a-0001	EsuBft3093_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_442 68095..68379 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_442:68095..69417+
coding sequence from alignment at Scaffold_442:68095..69417+

spliced messenger RNA

>EsuBft3093_2a-0001 ID=EsuBft3093_2a-0001|Name=EsuBft3093_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1323bp|location=Sequence derived from alignment at Scaffold_442:68095..69417+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAACAAGCAGATGAAGCGGCTGCTGCGGGGCATGTACACGGCACA
CACGGCAAAGGCGGCCAGGGACCCCAAGACGGGCAAGCTGGCACCGCCGG
GGCGTGGGGCCGTCGCTACTTGGTGCAAGAACGCGTGGGCATCCATCACC
CCCGAGACAGTCAAGACTTGCTTCAAGATCTGCGGCCTCACGCTCGCGCC
CGACGGCAGCAAAGACCACGCCTGGTGCCTGCACAACTCCGGGGACGGCT
ACCGCGAGCTCTGTTGGTATGCCCTTGTTGTGTGACCTCCATAGTACAAA
GAGTGTTGTTAACGGCATGTATTATCGTAGGGGGACATGAGGGAGAAGGA
GGGAGGAAGAGTGCCAGACCCAAAGCCAGTCGAAAAGGGGGCCCGCAACT
CGTATCTCAAGGTCTCTCCTAGCCGCCCCTCAAGGCAATCCCATCTGCGG
TACACGAAACCGCCAGTGATTTGGTACAATCCGACTAATCTACCTCCACG
CACGAACACCCTCCCTTGGTTCTTTACGCCAGTGAATAACCACCACTCGT
GCGTCGAAGAGTACATCCGAAAAGCACCTTAAACAACGCAAATTCGAAAC
AAGGGGAAACCCGCCATCGGATCAAAACCCCTTACAAATTTCAACGCCTT
CACGCCGTTCATATCATGAAAGATTCCAACGGCCGTACTGCAACATCAAG
GCAAGACAATATCTACCACCGCCCCCGGCTCGCTCTCTACGCCACGCTCG
GCTGACTCGACAAGGTCCTCCCTGCGCAGCACAAAAACAAATCATCAAGC
ACGCCCCTACCCTTCTGGTGAGGTCGTACGACAAACTTGGCCAAAATAGC
CACCTACAATGCACCTGATATCCATTGTCCGCTCCTCGAATAACACTGAT
AGTCTACACGCCGTATGCCCTTCCTTACGCAACACATGCCTAGTAGTTGG
GGACGACTTCATACGCCCTCTCTAGTGTGCCAAACAACGCGCGTCGCTTT
CCCCTTCTCGGAAAGGCGCTTTCCTTTCTTCATTCCTTGAACAAAGGCGA
CGCCTGGTGAGATTCGAACTCCCGGCGTATCCTTACTCGTTACATGGTCT
TATTCACCAGACTACTCAGTCACTTGGTTGCCTAGAAGCACATACACGTG
GCGATCGTCCAGCATTCAATCAACAAATCAGACACATGGTACATGCAACA
TCGTGGAAACATGACCAAACTCCTCCCGTAAAGAGAGTCCAACAGCACCC
AAGAGGCAACGCCCTCCGTTATCCAGTAACTGCAAGATCGAAATAGTTCC
ACCTCAATCATGAGAGGACGACC

protein sequence of EsuBft3093_2a-0001

>EsuBft3093_2 ID=EsuBft3093_2|Name=EsuBft3093_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=94bp
MLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASIT
PETVKTCFKICGLTLAPDGSKDHAWCLHNSGDGYRELCWYALVV

mRNA from alignment at Scaffold_442:68095..69417+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3093_2a-0001 ID=EsuBft3093_2a-0001|Name=EsuBft3093_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1323bp|location=Sequence derived from alignment at Scaffold_442:68095..69417+ (Ectocarpus subulatus male Bft15b)
ATGCTCAACAAGCAGATGAAGCGGCTGCTGCGGGGCATGTACACGGCACA
CACGGCAAAGGCGGCCAGGGACCCCAAGACGGGCAAGCTGGCACCGCCGG
GGCGTGGGGCCGTCGCTACTTGGTGCAAGAACGCGTGGGCATCCATCACC
CCCGAGACAGTCAAGACTTGCTTCAAGATCTGCGGCCTCACGCTCGCGCC
CGACGGCAGCAAAGACCACGCCTGGTGCCTGCACAACTCCGGGGACGGCT
ACCGCGAGCTCTGTTGGTATGCCCTTGTTGTGTGACCTCCATAGTACAAA
GAGTGTTGTTAACGGCATGTATTATCGTAGGGGGACATGAGGGAGAAGGA
GGGAGGAAGAGTGCCAGACCCAAAGCCAGTCGAAAAGGGGGCCCGCAACT
CGTATCTCAAGGTCTCTCCTAGCCGCCCCTCAAGGCAATCCCATCTGCGG
TACACGAAACCGCCAGTGATTTGGTACAATCCGACTAATCTACCTCCACG
CACGAACACCCTCCCTTGGTTCTTTACGCCAGTGAATAACCACCACTCGT
GCGTCGAAGAGTACATCCGAAAAGCACCTTAAACAACGCAAATTCGAAAC
AAGGGGAAACCCGCCATCGGATCAAAACCCCTTACAAATTTCAACGCCTT
CACGCCGTTCATATCATGAAAGATTCCAACGGCCGTACTGCAACATCAAG
GCAAGACAATATCTACCACCGCCCCCGGCTCGCTCTCTACGCCACGCTCG
GCTGACTCGACAAGGTCCTCCCTGCGCAGCACAAAAACAAATCATCAAGC
ACGCCCCTACCCTTCTGGTGAGGTCGTACGACAAACTTGGCCAAAATAGC
CACCTACAATGCACCTGATATCCATTGTCCGCTCCTCGAATAACACTGAT
AGTCTACACGCCGTATGCCCTTCCTTACGCAACACATGCCTAGTAGTTGG
GGACGACTTCATACGCCCTCTCTAGTGTGCCAAACAACGCGCGTCGCTTT
CCCCTTCTCGGAAAGGCGCTTTCCTTTCTTCATTCCTTGAACAAAGGCGA
CGCCTGGTGAGATTCGAACTCCCGGCGTATCCTTACTCGTTACATGGTCT
TATTCACCAGACTACTCAGTCACTTGGTTGCCTAGAAGCACATACACGTG
GCGATCGTCCAGCATTCAATCAACAAATCAGACACATGGTACATGCAACA
TCGTGGAAACATGACCAAACTCCTCCCGTAAAGAGAGTCCAACAGCACCC
AAGAGGCAACGCCCTCCGTTATCCAGTAACTGCAAGATCGAAATAGTTCC
ACCTCAATCATGAGAGGACGACC

Coding sequence (CDS) from alignment at Scaffold_442:68095..69417+

>EsuBft3093_2a-0001 ID=EsuBft3093_2a-0001|Name=EsuBft3093_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=285bp|location=Sequence derived from alignment at Scaffold_442:68095..69417+ (Ectocarpus subulatus male Bft15b)
ATGCTCAACAAGCAGATGAAGCGGCTGCTGCGGGGCATGTACACGGCACA
CACGGCAAAGGCGGCCAGGGACCCCAAGACGGGCAAGCTGGCACCGCCGG
GGCGTGGGGCCGTCGCTACTTGGTGCAAGAACGCGTGGGCATCCATCACC
CCCGAGACAGTCAAGACTTGCTTCAAGATCTGCGGCCTCACGCTCGCGCC
CGACGGCAGCAAAGACCACGCCTGGTGCCTGCACAACTCCGGGGACGGCT
ACCGCGAGCTCTGTTGGTATGCCCTTGTTGTGTGA