EsuBft308_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft308_5a-0001
Unique NameEsuBft308_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_161contigScaffold_161:174587..178667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FTC8
ProteomeIdEsuBft308_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length158
Hectar predicted targeting categoryother localisation
Evalue2.57e-136
EggNOG OGs2E4F7@1|root,2SC7W@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_000890.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft308_5aEsuBft308_5aEctocarpus subulatus male Bft15bgeneScaffold_161 174587..178667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft308_5a-0001EsuBft308_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_161 174642..177830 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft308_5a-0001-exonEsuBft308_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_161 174587..174797 +
EsuBft308_5a-0001-exonagat-exon-94031Ectocarpus subulatus male Bft15bexonScaffold_161 175502..175691 +
EsuBft308_5a-0001-exonagat-exon-94034Ectocarpus subulatus male Bft15bexonScaffold_161 176792..176865 +
EsuBft308_5a-0001-exonagat-exon-94032Ectocarpus subulatus male Bft15bexonScaffold_161 177078..177188 +
EsuBft308_5a-0001-exonagat-exon-94033Ectocarpus subulatus male Bft15bexonScaffold_161 177669..178667 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft308_5a-0001-exonagat-five_prime_utr-7762Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_161 174587..174641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft308_5a-0001-cdsEsuBft308_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_161 174642..174797 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft308_5a-0001-exonagat-three_prime_utr-12247Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_161 177831..178667 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft308_5a-0001 ID=EsuBft308_5a-0001|Name=EsuBft308_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1585bp|location=Sequence derived from alignment at Scaffold_161:174587..178667+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCCACATCTCTCTCCTCTTTTACTCCACTGCTGTGCTAGCCTCGCTCAC
ACCACATGGCGCGTGGAAAGTCGAAAATTCTCGGTCCGCAAGAAGACCAT
GCAACGGCAAAGGAGGGCGACGCTGAAGTCTCCGATTACGAGCTCGCTCG
ACTAGCTCGAATCAAACGAAATGAGGCATTTATGGCAAAGTTGTCGATCA
GTGCTCTAAAGACAGCGCCTTCCACAGCGGCAGCGGCGAAGAAGAAGCGC
TCGCCCTCGAAGCGACCACGGGACCCAGCCTCGAGGACGGCACCGTCTCG
AACGTCGAAGCGACTAAGAAGCAAAGCGGCGGATCCCCAAGACTTGGTGG
CAATACCTGGCACGTGGATCTCCAGCCTTGCGCGTGCAACAACCAAGCCG
GGAGGAGCACCTTCATCGTTTCGACACGACTACGGGCCGGAGCTGGATCC
AGAAGAAGCCGAAGAGAGGATGGAGGTGTTGAAAGGTCTCATCGATGCCA
GAGATGAAGCCAAGGCGGGTACAGCGAGTTACAACCACTGCCTTCACCGC
GTGCGGACGATGTCCGATGTCAGCCTCGCACGAAGGGTGCACACCATCGA
GCGAGCTCGAGGAGCCCAGGCGAAGGAAAAGATGTTGGTTTTCTCCCGGG
TTTTAACGGCCAAGGGAAAGACGGACCTCGCCGAGATGGCCGAGGCTGCC
CTTGACAGGCTCGTTCGGGGCGTTCCAATGCCCGAGAAGGAGAGGTGACG
AGCAACCGGAACCAGATCCCCCGAGGGACTGAAACCAAAAGACCAGTTCA
CGCGGAACATGGTGGTTGTGTGCTCTCTCTGGTGCGGCACATCACTGCTC
GGATTGTGTCAACAGCGGTCAAGCGTCTTTGAGAGACTTCCAGACGGACG
GAAGGACGAACAAACGTAGTCCCGGGAGGGCGTTGTTTTCTAGGCAGTGC
ACCGATGCGGCCCCTAACACTGAGGGCCATGGTGGTGGTGCTGCTGCTGG
TAATTATCCTCTGTGGAGGGCGTGCAGTAGGTGGCGGTGTGTGTAGCAGG
TAAACCTCGATGAGCTTAATGCACGTGTTCGAGCTCGGGCTATGATGAAG
CTCATACTTTTTAGTGGCACATCAGCAAACGGCGCAGGCACACAGCCACA
GCAGGGTCGGACGAGGTCTATCGTCCAAGGCTAGCTAGCAGGTGATGACG
TCGTTGTTGAATGGACGTAGCTGAGTGTCGAGCGGCCGTATGTTAGTAGC
AGCGTATGCTTTTGTGTACGCTAATGTGGGCGAACCTAAGTGATGCGCAC
TTTTGATTGTTTCAGATCATTCATCGGACCTCAGGTGGACATCGAAGTCG
CCCTCGTCCTTGTTTTTCCGGAGCGTACACTAGTTCGAACTTAGGGCCCT
ACTATTTCGTGACCGAGTCGGCGTATATCCCAATGTATCCTGGGTACATC
GAACACTACTTGCTGTTGTGGGCAGTGTTTTCACCGGTTCGGCCACGAAG
TCAACGTTTTACAATCCTGACCGTTCTACCGGCTGACTCCTAACCCTTAC
CATTCCCACCAAACAAGGGCGTTTCACTCTTCCCT
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protein sequence of EsuBft308_5a-0001

>EsuBft308_5 ID=EsuBft308_5|Name=EsuBft308_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=230bp
MARGKSKILGPQEDHATAKEGDAEVSDYELARLARIKRNEAFMAKLSISA
LKTAPSTAAAAKKKRSPSKRPRDPASRTAPSRTSKRLRSKAADPQDLVAI
PGTWISSLARATTKPGGAPSSFRHDYGPELDPEEAEERMEVLKGLIDARD
EAKAGTASYNHCLHRVRTMSDVSLARRVHTIERARGAQAKEKMLVFSRVL
TAKGKTDLAEMAEAALDRLVRGVPMPEKER
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mRNA from alignment at Scaffold_161:174587..178667+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft308_5a-0001 ID=EsuBft308_5a-0001|Name=EsuBft308_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4081bp|location=Sequence derived from alignment at Scaffold_161:174587..178667+ (Ectocarpus subulatus male Bft15b)
GCCCACATCTCTCTCCTCTTTTACTCCACTGCTGTGCTAGCCTCGCTCAC
ACCACATGGCGCGTGGAAAGTCGAAAATTCTCGGTCCGCAAGAAGACCAT
GCAACGGCAAAGGAGGGCGACGCTGAAGTCTCCGATTACGAGCTCGCTCG
ACTAGCTCGAATCAAACGAAATGAGGCATTTATGGCAAAGTTGTCGATCA
GTGCTCTAAAGGTATGCATGGGTGTGTGGAGGCAGCTGTGTATGGGAAGT
GTGAGCAGGGAGTACACGGAGCACAATCTTGCAGAGCGTTTCTCACGGCA
CTGCAGATGCGCAGGATACCCAGCCCAAATGGTTGATATAGCGTGTAGTC
TAGACATTCCATTGAAGAATGCTGGTGCATCTCCAATGGATGCACAGGCA
GACCCTCCGCATTGGCAGTGGGATGCTACATATCCTGAACGGCATCACCG
TGCTGCTGTACCGCATCATATCCCTGCGTGAGGAAGAGTGGCCGACCAAG
GCTCCTGCGAACCAAACGAAAACAACAGGCGGTTTTTCATCAATTGGACG
CGTTTTAACGTTTTCCTGCCTACCAAATTATGAATCCTCCCGGTGGGAAG
GGGGGTGGGCGAGGGCAACATTCTCGAATTCGTAGCCGACAGAGACGTGA
GTAGTAGACTTCCCTTAGTTCCTTGCCGCGATGCGATTTTTCGACCGTCT
GCTGCCCACTGCTGTGGTTACGATGCTCTGTCCTCGGGCGCCGGTATGGC
CTTGGTGTGCTTCCTTGCGAGGTGTGGCACTTGACACTCGAGACAACTCG
GAATGTTTTGACCATCTCGCTCCAGGCGGCGAGTCGCACCCATTGTTACC
ATCCTGACTGCAAATTTGTTGACATGGTATGAACAATCACGCCTCGCCCT
CAACGGCAAGGACAGACAGCGCCTTCCACAGCGGCAGCGGCGAAGAAGAA
GCGCTCGCCCTCGAAGCGACCACGGGACCCAGCCTCGAGGACGGCACCGT
CTCGAACGTCGAAGCGACTAAGAAGCAAAGCGGCGGATCCCCAAGACTTG
GTGGCAATACCTGGCACGTGGATCTCCAGCCTTGCGCGTGCAACAACCAA
GCCGGGTAAGGAAAGAGTCATCCGGGGGGGGGGGAGTTCAACTGGCCAAC
ACAATGTACATGAATGACCATTTAGGGTCGGGGATTCGGTTAATGTCGGG
GATTCGGTTAATGTGTGGGAATTTCGGCAAGCGGCTAGGGCCATTCTCCA
GATTGCCGAGAGAGCAGGGAGGGATCACAAGCGGGGCTCGTCGCATTCGC
TACGCATAGGAGGTGCCGTAGTACTGGCAGCCGGACGAGTGATTTCGGAT
CTGATTGTCTAGAGGGAGGGGAGGTGGATTGAAGTCGAGCATGGACACGT
GCAGGGTGTACACCCTCAAGAACATCGAGGACTCTGTGGCGGTTCCACGT
AAGTTTACCGAAGCCGGAAAGCGCTCGCAAGCGCAACCGGGCCACGGCGC
CGCTGTAGATGGAACGGACCACCGGAACCGTAGGACCTGCCTCGCGAGAT
AGGATCATTTTTCCGGTACTGTCGGTTGGGGTCTTGGGGCCATCCTCGAT
CGGCTCCACCCTTTCCACTCCAATTATTGTAATTTCATTTTACGACAAAA
ACAAAAAAATGAAGTTGTAGCTCTTGGTAATGGTCTGTAAGTTTGTTTTA
TTCCTTATGAAGAGTAGGAAAAGCGTAAGTAACTCATTTGGTAGAGTGTA
AGCTTGCCAAGCTTAAAGCTGAGGGTTTAAATCCCTTTTTTCTCTTTTTT
TATTTTATTTTTTAATTTGTAATAAAAGAAGACTTAAAATTTTTTTGTCT
AAATCTTTTAAATTATTATTTTCAAAAAAATTTAAAGGGTACCATTTTTT
ATTTAGTGGGGAGATATTTATTGGCACGACCAGACGTACGAAGCGAGTCA
GACCAGACGGGGTTGCGGTCGTGGTTTCACGTCGTTGCGGTTAGAAGTTA
TTTTTTGATCACCAGCTTGAATGATAATACATGACATCTCGGAAACATAT
CGCAAAACATGGGTCAACGCGCAACTGAGGCGAAGCAGACAAACGGAATT
TGTTTTTGCAGACTCTGGTGGCGTGTAGCCCTTCCTGTTTTCGCAACATT
CTAGTCTAATCGTGTTAACTGTCCCCCCCTTGCCTGTACTGCTCTCTATC
GTCAGGAGGAGCACCTTCATCGTTTCGACACGACTACGGGCCGGAGCTGG
ATCCAGAAGAAGCCGAAGAGAGGATGGAGGTGAGGTTGTTCAAGGCCGAC
GTCAGAGACGAGAGGAAAAAATCACGCCCCGTGTGCACTCCGCCGGGCTG
CGGAAGGAGGCTCGTGTGTGGTTGGTGAAACCTTCTCTCGCCTTTAGACT
CAGTGAGGTGCACTGACCATTTAGCTGCGGAGCAATTGTAACCACGAGTT
AACAAACTTTTCGACACCCGTGGGTACGGCTGTTTGTGCAGGTGTTGAAA
GGTCTCATCGATGCCAGAGATGAAGCCAAGGCGGGTACAGCGAGTTACAA
CCACTGCCTTCACCGCGTGCGGACGATGTCCGATGTCAGCCTCGCACGAA
GGGTACGTTTGTGCACAGCAGGGGTCCACAGCAGCACACGAACGCATGTG
TTGGATGTCGTGATCACCGACAATGAGGGGGGATACGCTTATGACGAATC
GTATTCTCAATCTGCAGTTGGTAGGTTTCGTCCACATCTTGTTTCCGTCG
CGATCCAACATTGCTGCTTTCCAAACAACCCTTTCCCTTATTCGCTAGTC
GCCACTGCCGCCCAGGAAAGAGTATTGACAAGCTCCCATACACCTTTTTG
CGGTCCGGGGTGTCATCCTTTGACCCACTATTACTCTCCGGTGTTCTGGG
TTAGCTGGCTTCCTCCTCGCCACGAGCATATGCCGGTGTCGTGCTCTGCT
AGCACACCCGGCAGCGACGACAGTGAATAATTTCGTGGCACCGTCCCATG
TGTGTGTGCGCGCGCTGCTGCGGCGGCGACTTATTTCATGGCACCACCCC
ATGTCTGTGCGCGCGCACGCGGGGTTGGACAGGTGCACACCATCGAGCGA
GCTCGAGGAGCCCAGGCGAAGGAAAAGATGTTGGTTTTCTCCCGGGTTTT
AACGGCCAAGGGAAAGACGGACCTCGCCGAGATGGCCGAGGCTGCCCTTG
ACAGGCTCGTTCGGGGCGTTCCAATGCCCGAGAAGGAGAGGTGACGAGCA
ACCGGAACCAGATCCCCCGAGGGACTGAAACCAAAAGACCAGTTCACGCG
GAACATGGTGGTTGTGTGCTCTCTCTGGTGCGGCACATCACTGCTCGGAT
TGTGTCAACAGCGGTCAAGCGTCTTTGAGAGACTTCCAGACGGACGGAAG
GACGAACAAACGTAGTCCCGGGAGGGCGTTGTTTTCTAGGCAGTGCACCG
ATGCGGCCCCTAACACTGAGGGCCATGGTGGTGGTGCTGCTGCTGGTAAT
TATCCTCTGTGGAGGGCGTGCAGTAGGTGGCGGTGTGTGTAGCAGGTAAA
CCTCGATGAGCTTAATGCACGTGTTCGAGCTCGGGCTATGATGAAGCTCA
TACTTTTTAGTGGCACATCAGCAAACGGCGCAGGCACACAGCCACAGCAG
GGTCGGACGAGGTCTATCGTCCAAGGCTAGCTAGCAGGTGATGACGTCGT
TGTTGAATGGACGTAGCTGAGTGTCGAGCGGCCGTATGTTAGTAGCAGCG
TATGCTTTTGTGTACGCTAATGTGGGCGAACCTAAGTGATGCGCACTTTT
GATTGTTTCAGATCATTCATCGGACCTCAGGTGGACATCGAAGTCGCCCT
CGTCCTTGTTTTTCCGGAGCGTACACTAGTTCGAACTTAGGGCCCTACTA
TTTCGTGACCGAGTCGGCGTATATCCCAATGTATCCTGGGTACATCGAAC
ACTACTTGCTGTTGTGGGCAGTGTTTTCACCGGTTCGGCCACGAAGTCAA
CGTTTTACAATCCTGACCGTTCTACCGGCTGACTCCTAACCCTTACCATT
CCCACCAAACAAGGGCGTTTCACTCTTCCCT
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Coding sequence (CDS) from alignment at Scaffold_161:174587..178667+

>EsuBft308_5a-0001 ID=EsuBft308_5a-0001|Name=EsuBft308_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=693bp|location=Sequence derived from alignment at Scaffold_161:174587..178667+ (Ectocarpus subulatus male Bft15b)
ATGGCGCGTGGAAAGTCGAAAATTCTCGGTCCGCAAGAAGACCATGCAAC
GGCAAAGGAGGGCGACGCTGAAGTCTCCGATTACGAGCTCGCTCGACTAG
CTCGAATCAAACGAAATGAGGCATTTATGGCAAAGTTGTCGATCAGTGCT
CTAAAGACAGCGCCTTCCACAGCGGCAGCGGCGAAGAAGAAGCGCTCGCC
CTCGAAGCGACCACGGGACCCAGCCTCGAGGACGGCACCGTCTCGAACGT
CGAAGCGACTAAGAAGCAAAGCGGCGGATCCCCAAGACTTGGTGGCAATA
CCTGGCACGTGGATCTCCAGCCTTGCGCGTGCAACAACCAAGCCGGGAGG
AGCACCTTCATCGTTTCGACACGACTACGGGCCGGAGCTGGATCCAGAAG
AAGCCGAAGAGAGGATGGAGGTGTTGAAAGGTCTCATCGATGCCAGAGAT
GAAGCCAAGGCGGGTACAGCGAGTTACAACCACTGCCTTCACCGCGTGCG
GACGATGTCCGATGTCAGCCTCGCACGAAGGGTGCACACCATCGAGCGAG
CTCGAGGAGCCCAGGCGAAGGAAAAGATGTTGGTTTTCTCCCGGGTTTTA
ACGGCCAAGGGAAAGACGGACCTCGCCGAGATGGCCGAGGCTGCCCTTGA
CAGGCTCGTTCGGGGCGTTCCAATGCCCGAGAAGGAGAGGTGA
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