EsuBft308_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft308_13a-0001
Unique Name	EsuBft308_13a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_161	contig	Scaffold_161:267537..270472 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	67593.Physo136255
ProteomeId	EsuBft308_13
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	IPR012337
Protein domains	IPR001584
Protein domains	SIGNAL_PEPTIDE
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	PTHR24559
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SSF56672
Owner	apollo_admin@sb-roscoff.fr
Note	transposon ty3-i gag-pol polyprotein os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:ty3b-i pe:3 sv:2 [Automatic annotation]
Nb exon	2
Max annot lvl	4776\|Peronosporales
Length	2073
Evalue	7.48e-65
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QBIP@4776\|Peronosporales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	transposition, RNA-mediated
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft308_13a	EsuBft308_13a	Ectocarpus subulatus male Bft15b	gene	Scaffold_161 267537..270472 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft308_13a-0001-exon	agat-exon-94074	Ectocarpus subulatus male Bft15b	exon	Scaffold_161 267537..268711 -
EsuBft308_13a-0001-exon	EsuBft308_13a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_161 269575..270472 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft308_13a-0001-cds	EsuBft308_13a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_161 267537..268711 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft308_13a-0001	EsuBft308_13	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_161 267537..270472 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_161:267537..270472-
coding sequence from alignment at Scaffold_161:267537..270472-

spliced messenger RNA

>EsuBft308_13a-0001 ID=EsuBft308_13a-0001|Name=EsuBft308_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2073bp|location=Sequence derived from alignment at Scaffold_161:267537..270472- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTTTCGGACGGCTCGCGACCTTTTCGTCTCTACTGTGATGCTAGT
CGCGATGGATTCGGTGGGACTCTCGAACAAGAACAGCCGGACGGCTCCAT
CCGACCNNNNNNNNNNNNNNGGCCTCAGCTACTATCGCAAGTTTCTTCCC
AACATGGCTACGCGCATTCGGCCTCTGACCACTCTTCTCAAGAAGCAGGC
GACGTTCGTCTTCGCCCCTGCCATGGTGCAAGCTGTTCGCGTCCCGCTGT
CTGAATTGGCCAACCCTCCTGTCTTGGTTTATCCGGATTTGGATGCCGTT
TCGGACGGCTCGCGACCTTTTCGTCTCTACTGTGATGCTAGTCGCGATGG
GTTCGGTGGGACTCTCGAACAAGAACAGCCGGACGGCTCCATCCGACCAA
TCGTCTTCATCAGCCGAGCCACTTTGGACTCCGAACGTCATTGGACCCCC
CTCGACCTCGAAGCGGGTAGCATCGTGTGGTCCATCAAACGACTTCGCGG
TTATCTGTGGGGTACTAAATTTCGCATTTTTACCGACCACAAGTCTCTTG
AGCATTTTGCCAAGGTGGGGGGGAACAATGCCCGCGTTCAGCGTTGGCTT
GAATTTCTCACCGCTTACAATTACACTCTCGAGTACCGCAAGGGTTCAGC
AAATGGCAACGCTGATTTCCTCTCTCGCCTTCCGATCGATGCGGCGGAAT
GTGACCGATCTGGTCGCAGTCGATTGACGCCAGATGACGATGAGGAGGGC
GTGTTCTTCATCCGTTCTTGTGGCCTTACGCCTTCCGGCCATCGCGCCGT
GGGTGTTGGCTTGGGTGGGCTCGTCCCCACTTCCCCGACTTCGGTCTTGG
GTGGGCTGGCCCCCTCTACCGATGATTTCATCGACTTCCGTCGGCATGCA
CCCCCGTCGTCTACGACCGCACGTCCTGGTGGGCGTGCTGCTCGCCTTCT
CAACGACGAACCCATTCGGATTTATGTTCCCATGCTCATGCGTCCGTGGA
TCATGCAAGCCTGTCACGCTGATGCCTCCTGCCACCTCGGTGCAGCTCGC
ACGCTCAGCATGCTAGAACGTTTCTATTGGTGGGTTGGCATGAGTGTTTG
CACGAAATGGTGGGTACGGCATTGTTTGCGATGCCAAGCCCGCAAATCAT
CTCGTCAGACGCCTCGATGGCCTACTCTGTGCCTTCCGCTGCCTTCGGGC
CCTGGTGTGTCGGTGAGCGTCGATTACTTCGGCCCCCTCCCGTTGACCCC
GCGCGGAAACACATATATTCTGCTCTTCACTGATCGTTTCAGCCGCCGTG
CTGATATGTACGCGGTTACGGCTGCAGAATTCACCGCCGAAGGCACCGCT
GATGTACTTGTCAATCAGTATATCCCTTTGTGGGGTTGCCCTTTGAGTCT
CTTGTCCGATAATGGCTCTCAGTTTTGCTCTAAACTGTCGCAGGCTGTGT
ACGCCCGTCTGGCTATTCGCAAAGTGGCTACTAGCTCTTACCATCCCAAT
GGAAATGGGGGTGTGGAGCGAGTCAACCACACTATGGCTCAGATGTTGGC
TATGGTCGTCAATGAGAGGCAAGATGATTGGGACATCCATTTGCCGCACG
TTGAGTTCGCCTACAACAATTCGGTTAGTGCCGCTACTGGTTTGGCACCC
AACGAAGTGCATATCAACCGGCTGCCGCGCATGCCGATGACGGTTTTTGA
GCATCCATATGCTCGAGGCCACCAAAGCTTGCATCGCGATCAACTCGAGT
ATTGCGATCTTGCTGCTGATCGCCAACGTTGTTCTTACGGTTTAGTTCGT
CAACAGCACAACCTGTCCGTTTCGCGGATCGAACGGCGCAACTCCGCTCT
ATCGGGTGCTTTGTGCCAGGTTCCCTCCTACACCGTCGGTGGATGGCTTT
GGGTGTACAACACTGAATCTACCATTCGCGAAGGTGTTCGTTCCGGCACG
GATGACAAGGTTCTCAAGGCTGAGTTGTCTTTCCTCTGGACTGGTCCGTT
CAAGATCTTCGCTGTGGGTCCGTGCTTTGACGCTCCCGACGGTTGTCCTT
TGGCTTCCAAATTGCTTTATTAG

protein sequence of EsuBft308_13a-0001

>EsuBft308_13 ID=EsuBft308_13|Name=EsuBft308_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=690bp
MPFRTARDLFVSTVMLVAMDSVGLSNKNSRTAPSDXXXXXGLSYYRKFLP
NMATRIRPLTTLLKKQATFVFAPAMVQAVRVPLSELANPPVLVYPDLDAV
SDGSRPFRLYCDASRDGFGGTLEQEQPDGSIRPIVFISRATLDSERHWTP
LDLEAGSIVWSIKRLRGYLWGTKFRIFTDHKSLEHFAKVGGNNARVQRWL
EFLTAYNYTLEYRKGSANGNADFLSRLPIDAAECDRSGRSRLTPDDDEEG
VFFIRSCGLTPSGHRAVGVGLGGLVPTSPTSVLGGLAPSTDDFIDFRRHA
PPSSTTARPGGRAARLLNDEPIRIYVPMLMRPWIMQACHADASCHLGAAR
TLSMLERFYWWVGMSVCTKWWVRHCLRCQARKSSRQTPRWPTLCLPLPSG
PGVSVSVDYFGPLPLTPRGNTYILLFTDRFSRRADMYAVTAAEFTAEGTA
DVLVNQYIPLWGCPLSLLSDNGSQFCSKLSQAVYARLAIRKVATSSYHPN
GNGGVERVNHTMAQMLAMVVNERQDDWDIHLPHVEFAYNNSVSAATGLAP
NEVHINRLPRMPMTVFEHPYARGHQSLHRDQLEYCDLAADRQRCSYGLVR
QQHNLSVSRIERRNSALSGALCQVPSYTVGGWLWVYNTESTIREGVRSGT
DDKVLKAELSFLWTGPFKIFAVGPCFDAPDGCPLASKLLY

mRNA from alignment at Scaffold_161:267537..270472-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft308_13a-0001 ID=EsuBft308_13a-0001|Name=EsuBft308_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2936bp|location=Sequence derived from alignment at Scaffold_161:267537..270472- (Ectocarpus subulatus male Bft15b)
ATGCCGTTTCGGACGGCTCGCGACCTTTTCGTCTCTACTGTGATGCTAGT
CGCGATGGATTCGGTGGGACTCTCGAACAAGAACAGCCGGACGGCTCCAT
CCGACCNNNNNNNNNNNNNNGGCCTCAGCTACTATCGCAAGTTTCTTCCC
AACATGGCTACGCGCATTCGGCCTCTGACCACTCTTCTCAAGAAGCAGGC
GACGTTCGTCTTCGCCCCTGCCATGGTGCAAGCTGTTCGCGTCCCGCTGT
CTGAATTGGCCAACCCTCCTGTCTTGGTTTATCCGGATTTGGATGCCGTT
TCGGACGGCTCGCGACCTTTTCGTCTCTACTGTGATGCTAGTCGCGATGG
GTTCGGTGGGACTCTCGAACAAGAACAGCCGGACGGCTCCATCCGACCAA
TCGTCTTCATCAGCCGAGCCACTTTGGACTCCGAACGTCATTGGACCCCC
CTCGACCTCGAAGCGGGTAGCATCGTGTGGTCCATCAAACGACTTCGCGG
TTATCTGTGGGGTACTAAATTTCGCATTTTTACCGACCACAAGTCTCTTG
AGCATTTTGCCAAGGTGGGGGGGAACAATGCCCGCGTTCAGCGTTGGCTT
GAATTTCTCACCGCTTACAATTACACTCTCGAGTACCGCAAGGGTTCAGC
AAATGGCAACGCTGATTTCCTCTCTCGCCTTCCGATCGATGCGGCGGAAT
GTGACCGATCTGGTCGCAGTCGATTGACGCCAGATGACGATGAGGAGGGC
GTGTTCTTCATCCGTTCTTGTGGCCTTACGCCTTCCGGCCATCGCGCCGT
GGGTGTTGGCTTGGGTGGGCTCGTCCCCACTTCCCCGACTTCGGTCTTGG
GTGGGCTGGCCCCCTCTACCGATGATTTCATCGACTTCCGTCGGCATGGT
CCACGTCTCTCGCCGTCAGGCCTTTCGTCTCCACCTGGCATTTGGAACAT
CGCACCCGAATCTTCGCCGGCCGTCTCGCCGATCGCAACATCGCGAAGGG
CCCTCGACCCTACTCAAGTGATTTCCACGCGGACTCGTCGTCGTACGGCG
GTTGTGGCGGGCACGCCCCTCCCGCCCGTGGATTATGGCTTCTCTGAGGA
TCCACTTGCTCCCGCTCGGATTTCCCCTTCGCCTCGATCGTTTCGACGTT
CCCCGCCCGCGCCTTCAGCTTCGACTATGCCACCCGTGTTGCCCAGGTTG
GTTTCGACTCCTGGTGCTGATGATTCGATCCCGGACCCGCCTACGCCCCT
AGCTCGTGGAAGGGGTCTATCATCTTCGACACATTCCGCAACTTCGGTTG
CCCCTACCCAGCAGTCCCCTGCTGTCCCCGATTCTTCGGAATCTACGACG
AGTTCGGTCTCAACCACTCGTACGCCTTCTTCTTCAGCTTCCGCTGCTGC
CCTGCCTTCGGATGGATTGCACTCGGAGCCTCATGAATCGACTCCCTCTT
CTATCGAGGCGTCTTTACANCTCCCTCTTCTATCGAGGCGGCTTTACATT
CTTCGGCAGATTTAGCCTTCCGGGCGTCTGTCGAACGTTTCTCGCATGCT
GATTGGGCTCGAGAGCAGCGTAACGAACCTGTTTGTGATGCAGCTATTCG
TTTCATCCTTCTGGGTCGGCCTTCGGCCCTACCTTCGTGTTTCCTGGATC
ATCTTCCGTCCGCTCGTCGACCTTCTCTGTCGGAGATCCGTGACCTGTCT
AACAATGGACGGTTACATGTTGACGATGATGGGTTGGTCTTGCTTGTTCG
CAAGCGCACAGCACCCCCGTCGTCTACGACCGCACGTCCTGGTGGGCGTG
CTGCTCGCCTTCTCAACGACGAACCCATTCGGATTTATGTTCCCATGCTC
ATGCGTCCGTGGATCATGCAAGCCTGTCACGCTGATGCCTCCTGCCACCT
CGGTGCAGCTCGCACGCTCAGCATGCTAGAACGTTTCTATTGGTGGGTTG
GCATGAGTGTTTGCACGAAATGGTGGGTACGGCATTGTTTGCGATGCCAA
GCCCGCAAATCATCTCGTCAGACGCCTCGATGGCCTACTCTGTGCCTTCC
GCTGCCTTCGGGCCCTGGTGTGTCGGTGAGCGTCGATTACTTCGGCCCCC
TCCCGTTGACCCCGCGCGGAAACACATATATTCTGCTCTTCACTGATCGT
TTCAGCCGCCGTGCTGATATGTACGCGGTTACGGCTGCAGAATTCACCGC
CGAAGGCACCGCTGATGTACTTGTCAATCAGTATATCCCTTTGTGGGGTT
GCCCTTTGAGTCTCTTGTCCGATAATGGCTCTCAGTTTTGCTCTAAACTG
TCGCAGGCTGTGTACGCCCGTCTGGCTATTCGCAAAGTGGCTACTAGCTC
TTACCATCCCAATGGAAATGGGGGTGTGGAGCGAGTCAACCACACTATGG
CTCAGATGTTGGCTATGGTCGTCAATGAGAGGCAAGATGATTGGGACATC
CATTTGCCGCACGTTGAGTTCGCCTACAACAATTCGGTTAGTGCCGCTAC
TGGTTTGGCACCCAACGAAGTGCATATCAACCGGCTGCCGCGCATGCCGA
TGACGGTTTTTGAGCATCCATATGCTCGAGGCCACCAAAGCTTGCATCGC
GATCAACTCGAGTATTGCGATCTTGCTGCTGATCGCCAACGTTGTTCTTA
CGGTTTAGTTCGTCAACAGCACAACCTGTCCGTTTCGCGGATCGAACGGC
GCAACTCCGCTCTATCGGGTGCTTTGTGCCAGGTTCCCTCCTACACCGTC
GGTGGATGGCTTTGGGTGTACAACACTGAATCTACCATTCGCGAAGGTGT
TCGTTCCGGCACGGATGACAAGGTTCTCAAGGCTGAGTTGTCTTTCCTCT
GGACTGGTCCGTTCAAGATCTTCGCTGTGGGTCCGTGCTTTGACGCTCCC
GACGGTTGTCCTTTGGCTTCCAAATTGCTTTATTAG

Coding sequence (CDS) from alignment at Scaffold_161:267537..270472-

>EsuBft308_13a-0001 ID=EsuBft308_13a-0001|Name=EsuBft308_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2073bp|location=Sequence derived from alignment at Scaffold_161:267537..270472- (Ectocarpus subulatus male Bft15b)
ATGCCGTTTCGGACGGCTCGCGACCTTTTCGTCTCTACTGTGATGCTAGT
CGCGATGGATTCGGTGGGACTCTCGAACAAGAACAGCCGGACGGCTCCAT
CCGACCNNNNNNNNNNNNNNGGCCTCAGCTACTATCGCAAGTTTCTTCCC
AACATGGCTACGCGCATTCGGCCTCTGACCACTCTTCTCAAGAAGCAGGC
GACGTTCGTCTTCGCCCCTGCCATGGTGCAAGCTGTTCGCGTCCCGCTGT
CTGAATTGGCCAACCCTCCTGTCTTGGTTTATCCGGATTTGGATGCCGTT
TCGGACGGCTCGCGACCTTTTCGTCTCTACTGTGATGCTAGTCGCGATGG
GTTCGGTGGGACTCTCGAACAAGAACAGCCGGACGGCTCCATCCGACCAA
TCGTCTTCATCAGCCGAGCCACTTTGGACTCCGAACGTCATTGGACCCCC
CTCGACCTCGAAGCGGGTAGCATCGTGTGGTCCATCAAACGACTTCGCGG
TTATCTGTGGGGTACTAAATTTCGCATTTTTACCGACCACAAGTCTCTTG
AGCATTTTGCCAAGGTGGGGGGGAACAATGCCCGCGTTCAGCGTTGGCTT
GAATTTCTCACCGCTTACAATTACACTCTCGAGTACCGCAAGGGTTCAGC
AAATGGCAACGCTGATTTCCTCTCTCGCCTTCCGATCGATGCGGCGGAAT
GTGACCGATCTGGTCGCAGTCGATTGACGCCAGATGACGATGAGGAGGGC
GTGTTCTTCATCCGTTCTTGTGGCCTTACGCCTTCCGGCCATCGCGCCGT
GGGTGTTGGCTTGGGTGGGCTCGTCCCCACTTCCCCGACTTCGGTCTTGG
GTGGGCTGGCCCCCTCTACCGATGATTTCATCGACTTCCGTCGGCATGCA
CCCCCGTCGTCTACGACCGCACGTCCTGGTGGGCGTGCTGCTCGCCTTCT
CAACGACGAACCCATTCGGATTTATGTTCCCATGCTCATGCGTCCGTGGA
TCATGCAAGCCTGTCACGCTGATGCCTCCTGCCACCTCGGTGCAGCTCGC
ACGCTCAGCATGCTAGAACGTTTCTATTGGTGGGTTGGCATGAGTGTTTG
CACGAAATGGTGGGTACGGCATTGTTTGCGATGCCAAGCCCGCAAATCAT
CTCGTCAGACGCCTCGATGGCCTACTCTGTGCCTTCCGCTGCCTTCGGGC
CCTGGTGTGTCGGTGAGCGTCGATTACTTCGGCCCCCTCCCGTTGACCCC
GCGCGGAAACACATATATTCTGCTCTTCACTGATCGTTTCAGCCGCCGTG
CTGATATGTACGCGGTTACGGCTGCAGAATTCACCGCCGAAGGCACCGCT
GATGTACTTGTCAATCAGTATATCCCTTTGTGGGGTTGCCCTTTGAGTCT
CTTGTCCGATAATGGCTCTCAGTTTTGCTCTAAACTGTCGCAGGCTGTGT
ACGCCCGTCTGGCTATTCGCAAAGTGGCTACTAGCTCTTACCATCCCAAT
GGAAATGGGGGTGTGGAGCGAGTCAACCACACTATGGCTCAGATGTTGGC
TATGGTCGTCAATGAGAGGCAAGATGATTGGGACATCCATTTGCCGCACG
TTGAGTTCGCCTACAACAATTCGGTTAGTGCCGCTACTGGTTTGGCACCC
AACGAAGTGCATATCAACCGGCTGCCGCGCATGCCGATGACGGTTTTTGA
GCATCCATATGCTCGAGGCCACCAAAGCTTGCATCGCGATCAACTCGAGT
ATTGCGATCTTGCTGCTGATCGCCAACGTTGTTCTTACGGTTTAGTTCGT
CAACAGCACAACCTGTCCGTTTCGCGGATCGAACGGCGCAACTCCGCTCT
ATCGGGTGCTTTGTGCCAGGTTCCCTCCTACACCGTCGGTGGATGGCTTT
GGGTGTACAACACTGAATCTACCATTCGCGAAGGTGTTCGTTCCGGCACG
GATGACAAGGTTCTCAAGGCTGAGTTGTCTTTCCTCTGGACTGGTCCGTT
CAAGATCTTCGCTGTGGGTCCGTGCTTTGACGCTCCCGACGGTTGTCCTT
TGGCTTCCAAATTGCTTTATTAG