EsuBft308_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft308_12a-0001
Unique Name	EsuBft308_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_161	contig	Scaffold_161:260420..264338 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft308_12
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR001810
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	G3DSA
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	372
Hectar predicted targeting category	no signal peptide or anchor
Ec32 ortholog description	Hypothetical protein
Ec32 ortholog	Ec-21_000830.1
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0031227

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft308_12a	EsuBft308_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_161 260420..264338 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft308_12a-0001-exon	EsuBft308_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_161 260420..260540 +
EsuBft308_12a-0001-exon	agat-exon-94073	Ectocarpus subulatus male Bft15b	exon	Scaffold_161 260732..264338 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft308_12a-0001-exon	agat-five_prime_utr-7760	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_161 260420..260435 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft308_12a-0001-cds	EsuBft308_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_161 260436..260540 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft308_12a-0001-exon	agat-three_prime_utr-12245	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_161 260807..264338 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft308_12a-0001	EsuBft308_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_161 260436..260806 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_161:260420..264338+
coding sequence from alignment at Scaffold_161:260420..264338+

spliced messenger RNA

>EsuBft308_12a-0001 ID=EsuBft308_12a-0001|Name=EsuBft308_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3728bp|location=Sequence derived from alignment at Scaffold_161:260420..264338+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NTGGCGGGCCTCGGCAATGGAGCTTATCCTCACCTCGTTCCTCAGCCCAA
TCCTGTGGGTCATTCCGCGGGGGGCGGTGCAAAACATGATGACAAACCTG
CACCCGACCGACTTAACGCAGGTGGCCTGCGTTTGCCAGGACTGGAGGCA
GCTCGCTCAGGACGTGCCCGCTCTCGCCCCGGGGGTGGTTGACTGATACC
CCCCCTCCGATTGTTCCGTGTATTCGGAGGGCGGTTACTCCCGGGAGACA
GACGTCAATGTCAGCTTGTTGATGTCCTGGGTGGGCTTGAGGGGATGGAC
AGGGAAGGAAGGCTTGCTGTTTTAGGCTCTAGCCCTTGGACGAATTTGTC
AAGTAGTACGGCTGTCATGCAAGGTTGCACGCGTTATTTTCTTCTTACAT
TGCATCCACCCCGCCCTTAGTCACCCGCTCCATCTCGGCATTGTAGGGAG
GCGAGGTCAATGGTCTAACGACTACGGCATGCGTTTTCATGATGAATACC
CCCCCCCCGTCGCTTGGCAACGACGCTGTGAAACAAGCCCATTCACTTCG
TGAACTCGGCAACCAGGTTACCGTTTTTTTTCTTGTGTTTTTTTTTTGGC
GGTAACCATATTGGTGGTCGAGTAGATCATGTTGTGCGGGGTGGAGAACC
CTCACTCCGCGCAAGGGGGATGATCGCACCACGTTGTGTTAAAATGATCA
AGCACCCTCGAGGCAGTTACACAGTGCTTATAACTGTCTCTGGAAGTGGA
GCACCAGAAATTAAATGAAGTCATGCGCAGCTGTCATCCGTATGCAAGGA
ACTAAGAACAAGATGCCGAACACCGTTAGCAGGATGCCGCGCACCCTTCA
TGCGACTCGCCGAATACCTCACGGTGCTTCGCGCTTGGTGATGGAGAGCC
TGGTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGATGCGA
GGTCAATAGCCTAACGACTACGGCATGCACGACTATGAGTACACCCCCCC
CCCCGTACTTGGAGCACGCGTATTGTGCATATGAAGATGATTTTTTTTTC
TGTTCTTTTTTCGTAATCTGAGGCGCACGCGTACATGCATATGTACGTCT
GAAGATGAACCTGCTGATGTGGCTTCGGAAGGGGAAGGTTTTGTTATCTT
CATTGGTCAGGCTTGTAACGACCACCGCAATAACCGTTCTGCGAAAGGCC
GCATTTTTTTCAGGACGCTTGAGTTTTTACCCGTTGCGCGTTGTTCGAAA
CCGCTGCGTGGATAGAGAGAGAGGAGGGGGGGAGGGCAGAGAGAGCGAGA
GGAGACGCCGCGAAGTTGTGCCGTTCACGTCAACCTCCAAGACATGTCGC
CAAAGGCTAGGATGGCACTTTCTAAGTTGCTGACTGATTGTCCATGGCAA
CTCCACAGTCAGTGCGCCTTTGTGGCTTGAACTCAATGCCGCAGCTTTTT
TTTGTCAGACAGAGCCCGCGCGGCTTGTACGAGGGTGACGATGTTGATGT
CTCGTCAGGCTGTGTCAGTGACGGGTATTTCTGGGGGCGGGCGGTGGAGA
CAGACGGCTCGGTAGGTTTTGTGGCTCACATGCTCTGGGTCCCGAGGTAC
CGCTTTCGTTTGGAAACATCGGTCGGGACCTTTGGGATATTCGCATTTGT
ATCCGCAATGCTCCTTATACCATGGTATTTTCCAACAGGGCGGCGTTGTT
GCGGTTTTCCACCCAAGCCAACGGAGAACTCGGGGAGGGGGAGGGGAGGT
GTGCATGACTCCGCGGGCGCCTCCTCTGTACCCCGTTCCGTTGTTGTCAT
AGCACACCATCGTATGAGTTGTTTTCGGAGATGTCGCTGTTTCGGAGATC
GCTGGTGGCCTACAGCGGCGATACCCGAGGCCCTCGAGACACGAAGATAT
GTAGCTCCGGGCCAGTACCATGTCCACATCTGGTAAGGGCGGCGGGGGTC
GACAGCAGTGCCCTCGGCTGATTGCAACTATGTATGTCCTAGGGAAGTTG
ACAATACAGGTGTCTTTCCGCTTGGCATCGGCCTGGCCTGACTGAGGGAG
CCGTTGGAGAGAGCCGTTCGCGATACTGTACCCACGCGGGGTGTAGACTA
TTGTTGTACATGTTCGGGTTGCCTATCAGGCACAAACAACGCTGGCGGCT
CGTCGCTCTGCACCTTGTTTGTCTGTCTGCGGTGTCGTCATCGTGGAGAC
GCTGTCGGTCCGTCCCCTCTATTCAGTAGGCTCGGTGTGTTTGTTGCGCT
ACGGCGGCAGTAGCGGTCCCGGTGTAACGCCGGTCGAATAATGCCGGTTT
CCCGGTATGATGCCGGTGAAATCGTCTGGATCGCACCAGCATTATGCGGG
AACCATTACTGGTGTACTAGTAGTCTCTCTTGGGGGGTTAATTCGACGGT
TATGTCAACAGTTTGGCTCATCAGTCAGCTGCCCGGCTCGCCGCATGTTT
TACCGGCGAGCGGCGTGTGTGTGTACGTGAAAGCGGGGGAACTGAGGGGC
TCAGGTTTTATTGCAGAGCATCTGCTAAAAACCGTATTGCTCTTATCGTG
TAGATTCCTAAGGCGATTATTTTTGTTGTCCTCTCATTCTTTTCCTTCTT
GGAGCGTCGATTATACACGTTTCGTTTTTTTGGGGGGGGTCATGATGGGG
TTTCACTTTGTCTTTTTAAATCTCGAATCTGTGCGGGGGGGGAGGTCGGT
TTGAAATGTTTATTCTGCTGTGCCCCCGAGTAGAAGATTCACCGCGAGGC
CATGGAGCGCACAGACGGACCGGTACATCGTCGAAGAACGGGACATGTCA
AAAGCGGGAGGGGGTTAGATGTAAAAATGCTGAAGTGGGGGGTTGATGTT
GGAGGTAACATGAGGAGGGTTCATATGCATACATGCATAGCACGTGTGTT
GTTCAGCCCAAGTATACATGTACGAAGGAGGGTTGCAGGCATGATGGCCC
AGCTTCTTTTTTTTTTTCTGTGTGGCCACGGATGATTATAGCTACCCGGC
AGGACAGCCGTGAGCGCTGTGATGAATACAGATGGCGCCCGCACTTAAGA
ACCTCCAGTTTCGGCCGAGGCTGGGGTTCTGATATTGCCGATCATCCTCT
TGTGGGCTACAAATCGCCACTATTTAGCTTTTAGTGTAGGGGTTCTTAAC
TGGGCTCACACATGATGCCCTAGTTTTTAGCTTCTGATTTTTTTCGAGTC
TCAATTTCTTAACTGCCAAGTTATTGAGTGCGGGCGCTATCTGTAGCGAT
AAAAAACAAAAAAAAATACTTCTTGTGGGGGTTGTTGTGGTGGTGCTCCC
AGTTCAAGGAAACTTCCAAGAAACTTCCTAGGGGGCATGACAAGCATGGC
GTTGCGTCCGAGCGACTTCACTTCCTCACGGGGTTTCCAACCGACACAGA
GGTCTTTCTTCATCTTGCGCCTTGGCTCGTCAGACTTCAGCGAGGGGGGG
GGGGGACNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGACTCTGCCT
TCCTTAGTTGGTAGACCGTTCACCACACATGCGTGTCTTCTGGAGAGGAA
GGAGGGGCATTTCGACGGCGGGAAGGGTGGACTCCGCAGAAAGAAGAAAT
GAATAGCCCTCGCGATTGTCGCAAGCATTTGTCCGGGACGGCACCTTTTG
AATGCATGCCGGTGTGTTGTTGGGGCGTTCATAAGCATCGGCAGACCGCG
CTACCAGGCTGACCAATGAAAAGACGCC

protein sequence of EsuBft308_12a-0001

>EsuBft308_12 ID=EsuBft308_12|Name=EsuBft308_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=59bp
MELILTSFLSPILWVIPRGAVQNMMTNLHPTDLTQVACVCQDWRQLAQDV
PALAPGVVD

mRNA from alignment at Scaffold_161:260420..264338+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft308_12a-0001 ID=EsuBft308_12a-0001|Name=EsuBft308_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3919bp|location=Sequence derived from alignment at Scaffold_161:260420..264338+ (Ectocarpus subulatus male Bft15b)
NTGGCGGGCCTCGGCAATGGAGCTTATCCTCACCTCGTTCCTCAGCCCAA
TCCTGTGGGTCATTCCGCGGGGGGCGGTGCAAAACATGATGACAAACCTG
CACCCGACCGACTTAACGCAGGTAAACAAATAGTACCAAAACCCCACAGC
AGTGCATTGAGGTAAATAAATAGTACCGACTACCACACAACGGCAGTGCA
TTGAGACGGGAATGATGCTGTGGGTAATCCTTGCCGCTGAAAATGCCCTC
GCCTGTGGAGTTGGCCAAAACTACAAGATCGCGCAAACGCCTTCGCCTGC
TGCAACAAGCAGGTGGCCTGCGTTTGCCAGGACTGGAGGCAGCTCGCTCA
GGACGTGCCCGCTCTCGCCCCGGGGGTGGTTGACTGATACCCCCCCTCCG
ATTGTTCCGTGTATTCGGAGGGCGGTTACTCCCGGGAGACAGACGTCAAT
GTCAGCTTGTTGATGTCCTGGGTGGGCTTGAGGGGATGGACAGGGAAGGA
AGGCTTGCTGTTTTAGGCTCTAGCCCTTGGACGAATTTGTCAAGTAGTAC
GGCTGTCATGCAAGGTTGCACGCGTTATTTTCTTCTTACATTGCATCCAC
CCCGCCCTTAGTCACCCGCTCCATCTCGGCATTGTAGGGAGGCGAGGTCA
ATGGTCTAACGACTACGGCATGCGTTTTCATGATGAATACCCCCCCCCCG
TCGCTTGGCAACGACGCTGTGAAACAAGCCCATTCACTTCGTGAACTCGG
CAACCAGGTTACCGTTTTTTTTCTTGTGTTTTTTTTTTGGCGGTAACCAT
ATTGGTGGTCGAGTAGATCATGTTGTGCGGGGTGGAGAACCCTCACTCCG
CGCAAGGGGGATGATCGCACCACGTTGTGTTAAAATGATCAAGCACCCTC
GAGGCAGTTACACAGTGCTTATAACTGTCTCTGGAAGTGGAGCACCAGAA
ATTAAATGAAGTCATGCGCAGCTGTCATCCGTATGCAAGGAACTAAGAAC
AAGATGCCGAACACCGTTAGCAGGATGCCGCGCACCCTTCATGCGACTCG
CCGAATACCTCACGGTGCTTCGCGCTTGGTGATGGAGAGCCTGGTCCGGT
GAGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCAATAG
CCTAACGACTACGGCATGCACGACTATGAGTACACCCCCCCCCCCGTACT
TGGAGCACGCGTATTGTGCATATGAAGATGATTTTTTTTTCTGTTCTTTT
TTCGTAATCTGAGGCGCACGCGTACATGCATATGTACGTCTGAAGATGAA
CCTGCTGATGTGGCTTCGGAAGGGGAAGGTTTTGTTATCTTCATTGGTCA
GGCTTGTAACGACCACCGCAATAACCGTTCTGCGAAAGGCCGCATTTTTT
TCAGGACGCTTGAGTTTTTACCCGTTGCGCGTTGTTCGAAACCGCTGCGT
GGATAGAGAGAGAGGAGGGGGGGAGGGCAGAGAGAGCGAGAGGAGACGCC
GCGAAGTTGTGCCGTTCACGTCAACCTCCAAGACATGTCGCCAAAGGCTA
GGATGGCACTTTCTAAGTTGCTGACTGATTGTCCATGGCAACTCCACAGT
CAGTGCGCCTTTGTGGCTTGAACTCAATGCCGCAGCTTTTTTTTGTCAGA
CAGAGCCCGCGCGGCTTGTACGAGGGTGACGATGTTGATGTCTCGTCAGG
CTGTGTCAGTGACGGGTATTTCTGGGGGCGGGCGGTGGAGACAGACGGCT
CGGTAGGTTTTGTGGCTCACATGCTCTGGGTCCCGAGGTACCGCTTTCGT
TTGGAAACATCGGTCGGGACCTTTGGGATATTCGCATTTGTATCCGCAAT
GCTCCTTATACCATGGTATTTTCCAACAGGGCGGCGTTGTTGCGGTTTTC
CACCCAAGCCAACGGAGAACTCGGGGAGGGGGAGGGGAGGTGTGCATGAC
TCCGCGGGCGCCTCCTCTGTACCCCGTTCCGTTGTTGTCATAGCACACCA
TCGTATGAGTTGTTTTCGGAGATGTCGCTGTTTCGGAGATCGCTGGTGGC
CTACAGCGGCGATACCCGAGGCCCTCGAGACACGAAGATATGTAGCTCCG
GGCCAGTACCATGTCCACATCTGGTAAGGGCGGCGGGGGTCGACAGCAGT
GCCCTCGGCTGATTGCAACTATGTATGTCCTAGGGAAGTTGACAATACAG
GTGTCTTTCCGCTTGGCATCGGCCTGGCCTGACTGAGGGAGCCGTTGGAG
AGAGCCGTTCGCGATACTGTACCCACGCGGGGTGTAGACTATTGTTGTAC
ATGTTCGGGTTGCCTATCAGGCACAAACAACGCTGGCGGCTCGTCGCTCT
GCACCTTGTTTGTCTGTCTGCGGTGTCGTCATCGTGGAGACGCTGTCGGT
CCGTCCCCTCTATTCAGTAGGCTCGGTGTGTTTGTTGCGCTACGGCGGCA
GTAGCGGTCCCGGTGTAACGCCGGTCGAATAATGCCGGTTTCCCGGTATG
ATGCCGGTGAAATCGTCTGGATCGCACCAGCATTATGCGGGAACCATTAC
TGGTGTACTAGTAGTCTCTCTTGGGGGGTTAATTCGACGGTTATGTCAAC
AGTTTGGCTCATCAGTCAGCTGCCCGGCTCGCCGCATGTTTTACCGGCGA
GCGGCGTGTGTGTGTACGTGAAAGCGGGGGAACTGAGGGGCTCAGGTTTT
ATTGCAGAGCATCTGCTAAAAACCGTATTGCTCTTATCGTGTAGATTCCT
AAGGCGATTATTTTTGTTGTCCTCTCATTCTTTTCCTTCTTGGAGCGTCG
ATTATACACGTTTCGTTTTTTTGGGGGGGGTCATGATGGGGTTTCACTTT
GTCTTTTTAAATCTCGAATCTGTGCGGGGGGGGAGGTCGGTTTGAAATGT
TTATTCTGCTGTGCCCCCGAGTAGAAGATTCACCGCGAGGCCATGGAGCG
CACAGACGGACCGGTACATCGTCGAAGAACGGGACATGTCAAAAGCGGGA
GGGGGTTAGATGTAAAAATGCTGAAGTGGGGGGTTGATGTTGGAGGTAAC
ATGAGGAGGGTTCATATGCATACATGCATAGCACGTGTGTTGTTCAGCCC
AAGTATACATGTACGAAGGAGGGTTGCAGGCATGATGGCCCAGCTTCTTT
TTTTTTTTCTGTGTGGCCACGGATGATTATAGCTACCCGGCAGGACAGCC
GTGAGCGCTGTGATGAATACAGATGGCGCCCGCACTTAAGAACCTCCAGT
TTCGGCCGAGGCTGGGGTTCTGATATTGCCGATCATCCTCTTGTGGGCTA
CAAATCGCCACTATTTAGCTTTTAGTGTAGGGGTTCTTAACTGGGCTCAC
ACATGATGCCCTAGTTTTTAGCTTCTGATTTTTTTCGAGTCTCAATTTCT
TAACTGCCAAGTTATTGAGTGCGGGCGCTATCTGTAGCGATAAAAAACAA
AAAAAAATACTTCTTGTGGGGGTTGTTGTGGTGGTGCTCCCAGTTCAAGG
AAACTTCCAAGAAACTTCCTAGGGGGCATGACAAGCATGGCGTTGCGTCC
GAGCGACTTCACTTCCTCACGGGGTTTCCAACCGACACAGAGGTCTTTCT
TCATCTTGCGCCTTGGCTCGTCAGACTTCAGCGAGGGGGGGGGGGGACNN
NNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGACTCTGCCTTCCTTAGTT
GGTAGACCGTTCACCACACATGCGTGTCTTCTGGAGAGGAAGGAGGGGCA
TTTCGACGGCGGGAAGGGTGGACTCCGCAGAAAGAAGAAATGAATAGCCC
TCGCGATTGTCGCAAGCATTTGTCCGGGACGGCACCTTTTGAATGCATGC
CGGTGTGTTGTTGGGGCGTTCATAAGCATCGGCAGACCGCGCTACCAGGC
TGACCAATGAAAAGACGCC

Coding sequence (CDS) from alignment at Scaffold_161:260420..264338+

>EsuBft308_12a-0001 ID=EsuBft308_12a-0001|Name=EsuBft308_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=180bp|location=Sequence derived from alignment at Scaffold_161:260420..264338+ (Ectocarpus subulatus male Bft15b)
ATGGAGCTTATCCTCACCTCGTTCCTCAGCCCAATCCTGTGGGTCATTCC
GCGGGGGGCGGTGCAAAACATGATGACAAACCTGCACCCGACCGACTTAA
CGCAGGTGGCCTGCGTTTGCCAGGACTGGAGGCAGCTCGCTCAGGACGTG
CCCGCTCTCGCCCCGGGGGTGGTTGACTGA