EsuBft308_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft308_11a-0001
Unique NameEsuBft308_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_161contigScaffold_161:254590..255470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft308_11
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsIPR001138
Protein domainsTMhelix
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length42
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0005515
GO0000981
GO0003824
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft308_11aEsuBft308_11aEctocarpus subulatus male Bft15bgeneScaffold_161 254590..255470 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft308_11a-0001-exonEsuBft308_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_161 254590..254806 -
EsuBft308_11a-0001-exonagat-exon-94072Ectocarpus subulatus male Bft15bexonScaffold_161 255268..255470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft308_11a-0001-cdsEsuBft308_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_161 254590..254806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft308_11a-0001EsuBft308_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_161 254590..255470 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft308_11a-0001 ID=EsuBft308_11a-0001|Name=EsuBft308_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=420bp|location=Sequence derived from alignment at Scaffold_161:254590..255470- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCCCAGTTGCATAGCGACTACAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGGTGCAGTCGGGGCGCCGGGGGTAGTCGCTGGAGGCCGGCAAACCA
ACAAGCGTCGAACCAAGGAGAAAAAGACCACCATACGGAAGTCGTGCGAC
TTCTGCAATGGGAGGAAAAAGAGATGTGATGGCGACGGCGTCAATCGGTG
CAGCTACTGCATCATCAAGAAAAACCCCCACTGCATTTACAGCCCGCGGC
GGCCCCAGAAGCCGCGGGCGCGCAAGGCGCCAGCTGCGCCTGCACCCACG
ACTTCTTCGACCACCACCACCATCATCGCCCCAACAACAAGCCGAGGGGG
AGCAGGAGGAGCAGGGGCGGGAGGGGGTCTGCTTGTGGAGGCCCTGCTTC
GACCATCCTTGAAGAGGTGA
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protein sequence of EsuBft308_11a-0001

>EsuBft308_11 ID=EsuBft308_11|Name=EsuBft308_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=139bp
MHPSCIATTAAAAAAAAAGAVGAPGVVAGGRQTNKRRTKEKKTTIRKSCD
FCNGRKKRCDGDGVNRCSYCIIKKNPHCIYSPRRPQKPRARKAPAAPAPT
TSSTTTTIIAPTTSRGGAGGAGAGGGLLVEALLRPSLKR
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mRNA from alignment at Scaffold_161:254590..255470-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft308_11a-0001 ID=EsuBft308_11a-0001|Name=EsuBft308_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=881bp|location=Sequence derived from alignment at Scaffold_161:254590..255470- (Ectocarpus subulatus male Bft15b)
ATGCATCCCAGTTGCATAGCGACTACAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGGTGCAGTCGGGGCGCCGGGGGTAGTCGCTGGAGGCCGGCAAACCA
ACAAGCGTCGAACCAAGGAGAAAAAGACCACCATACGGAAGTCGTGCGAC
TTCTGCAATGGGAGGAAAAAGAGATGTGATGGCGACGGCGTCAATCGGTG
CAGGTGTGCTGCACGTACACGTGTGTTTGCGAGGCAGCGCCACTGTTTTA
ATTCCGGTCTGGTTGACCTGTCTGTATGTCAAGTTTTGCTGCAACGGACA
ACGCTCTCTCTGTTCATCCCGATGACTGGTGTAAACGGGGCATCTACTGG
TACAAGCTTAGCCTCCGGTTTGCATTACACAATCACGCAGCAAAACCTTT
GCCAAGCCGACGGCTTTGGACGGAACACTTTTTCCTCATGGCGTTCGCAG
CAGGGAACATGCACGACGGCATGTGGGGTTGGTCTTTCCAAGCTCGCGAT
CAAGTAGATTATTCGTAAACGTGTCGCGTGCATCCAAGATCATAAGGCAT
GTTTTTCGTGCACTCTTTTTTTCGTTTGCGCCTTGTGTCATGTTCGCGCA
TCAAACCTGCTGTCTAAGCTACCTAGCTCCCGTGATGGCCATCCTGTCTT
TGTCCCTTCTGCAGCTACTGCATCATCAAGAAAAACCCCCACTGCATTTA
CAGCCCGCGGCGGCCCCAGAAGCCGCGGGCGCGCAAGGCGCCAGCTGCGC
CTGCACCCACGACTTCTTCGACCACCACCACCATCATCGCCCCAACAACA
AGCCGAGGGGGAGCAGGAGGAGCAGGGGCGGGAGGGGGTCTGCTTGTGGA
GGCCCTGCTTCGACCATCCTTGAAGAGGTGA
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Coding sequence (CDS) from alignment at Scaffold_161:254590..255470-

>EsuBft308_11a-0001 ID=EsuBft308_11a-0001|Name=EsuBft308_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=420bp|location=Sequence derived from alignment at Scaffold_161:254590..255470- (Ectocarpus subulatus male Bft15b)
ATGCATCCCAGTTGCATAGCGACTACAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGGTGCAGTCGGGGCGCCGGGGGTAGTCGCTGGAGGCCGGCAAACCA
ACAAGCGTCGAACCAAGGAGAAAAAGACCACCATACGGAAGTCGTGCGAC
TTCTGCAATGGGAGGAAAAAGAGATGTGATGGCGACGGCGTCAATCGGTG
CAGCTACTGCATCATCAAGAAAAACCCCCACTGCATTTACAGCCCGCGGC
GGCCCCAGAAGCCGCGGGCGCGCAAGGCGCCAGCTGCGCCTGCACCCACG
ACTTCTTCGACCACCACCACCATCATCGCCCCAACAACAAGCCGAGGGGG
AGCAGGAGGAGCAGGGGCGGGAGGGGGTCTGCTTGTGGAGGCCCTGCTTC
GACCATCCTTGAAGAGGTGA
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