EsuBft308_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft308_10a-0001
Unique Name	EsuBft308_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_161	contig	Scaffold_161:244391..249868 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft308_10
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	62
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft308_10a	EsuBft308_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_161 244391..249868 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft308_10a-0001-exon	EsuBft308_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_161 244391..244416 +
EsuBft308_10a-0001-exon	agat-exon-94071	Ectocarpus subulatus male Bft15b	exon	Scaffold_161 249273..249868 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft308_10a-0001-cds	EsuBft308_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_161 244391..244416 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft308_10a-0001-exon	agat-three_prime_utr-12244	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_161 249463..249868 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft308_10a-0001	EsuBft308_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_161 244391..249462 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_161:244391..249868+
coding sequence from alignment at Scaffold_161:244391..249868+

spliced messenger RNA

>EsuBft308_10a-0001 ID=EsuBft308_10a-0001|Name=EsuBft308_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=622bp|location=Sequence derived from alignment at Scaffold_161:244391..249868+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAAGACACACACCTTTGGCAGGCAGGAGGCGGAAGCGTCCGCGAA
GCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACGGCCTCAGGACCGA
AGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGGAAGAAACGGCGACCG
GGCACTGCTGTAGAAGCGAGTAGGGCGGCCGAGGCAGCACTTGTGGCGAA
CTATGTACCCGGCTGATGTTATTGCGCCCTGTTTCCCTCCCTGCTGTATG
CTATACTCCTTTATGTATGTCCTTTGTATTGCCTTCGGCCTCTGTGCTGT
GTTTCTATTTTTCATGACCTCCCTGCCTACTCTGTCTGCTGTGTTGGGTA
CCTTGATCTCGCTTTGCTGTTGCCTTTGTTTTTTGTACGTCTGGCTGTCT
GCCCATCTGCCGCCTCTTTGTCCTGTTTGGTCCGTGACTCCCATGCCCTG
GTGCGTAGTGCCTGGTGCTGGTACGTTACCCTTTGATTTTTTCTTTGGGC
GGGTGTGGGAAGCGTCCTCCGTTATTTTTGTTTTTGTTTTATTTTGATCG
GTTTCCGAGGGCTCTTTTCTCGAACGGTCGGAGCGATACCTGTTATTTTC
TTTCTATCATTTTGTTTTCTTT

protein sequence of EsuBft308_10a-0001

>EsuBft308_10 ID=EsuBft308_10|Name=EsuBft308_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=71bp
MTKTHTFGRQEAEASAKRQRAREAEAESTASGPKRKRAGEAAVGGKKRRP
GTAVEASRAAEAALVANYVPG

mRNA from alignment at Scaffold_161:244391..249868+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft308_10a-0001 ID=EsuBft308_10a-0001|Name=EsuBft308_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5478bp|location=Sequence derived from alignment at Scaffold_161:244391..249868+ (Ectocarpus subulatus male Bft15b)
ATGACAAAGACACACACCTTTGGCAGGTAAGTGGCAGGAACCCCATGCAT
CCGAAGAAGTCCCCAAGGAAAGCGTTTTCCTGCGTGCCCACCAGCCCCGT
TGCAAGAGACATGCCGAGACGACCTCTGGAGACCCCGCCGCACACAGGGG
GGCAGGAGACAAGCACATAAACGATTCCATGTGTTGATGTGCATGGGGGG
AACGGAAGCAAGCAAGACGTGATTGGCAAGCAGCGGTGGAAATAATGCGG
AGATAGACACGGGGTTATCGTGTACAAGAAGACGCGGACCTGTTTGATTG
GGAGTTGGACATCTTACGGCGGCAAACACATGGGGGGGGGGGGGGGGGGG
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GGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACCACAAGGTCGAGGAC
GGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGGAAGCGTC
CGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACGGCCTCAG
GACCGAAGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGGAAGAAACGG
CGACCGGGCACTGCTGTAGAAGCGAGTAGGGCGGCCGAGGCAGCACTTGT
GGCGAACTATGTACCCGGCTGATGTTATTGCGCCCTGTTTCCCTCCCTGC
TGTATGCTATACTCCTTTATGTATGTCCTTTGTATTGCCTTCGGCCTCTG
TGCTGTGTTTCTATTTTTCATGACCTCCCTGCCTACTCTGTCTGCTGTGT
TGGGTACCTTGATCTCGCTTTGCTGTTGCCTTTGTTTTTTGTACGTCTGG
CTGTCTGCCCATCTGCCGCCTCTTTGTCCTGTTTGGTCCGTGACTCCCAT
GCCCTGGTGCGTAGTGCCTGGTGCTGGTACGTTACCCTTTGATTTTTTCT
TTGGGCGGGTGTGGGAAGCGTCCTCCGTTATTTTTGTTTTTGTTTTATTT
TGATCGGTTTCCGAGGGCTCTTTTCTCGAACGGTCGGAGCGATACCTGTT
ATTTTCTTTCTATCATTTTGTTTTCTTT

Coding sequence (CDS) from alignment at Scaffold_161:244391..249868+

>EsuBft308_10a-0001 ID=EsuBft308_10a-0001|Name=EsuBft308_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=216bp|location=Sequence derived from alignment at Scaffold_161:244391..249868+ (Ectocarpus subulatus male Bft15b)
ATGACAAAGACACACACCTTTGGCAGGCAGGAGGCGGAAGCGTCCGCGAA
GCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACGGCCTCAGGACCGA
AGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGGAAGAAACGGCGACCG
GGCACTGCTGTAGAAGCGAGTAGGGCGGCCGAGGCAGCACTTGTGGCGAA
CTATGTACCCGGCTGA