Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft3086_3 |
| Protein domains | PF14227 |
| Protein domains | IPR001878 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 277 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
| GO | 0008270 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft3086_3a-0001 ID=EsuBft3086_3a-0001|Name=EsuBft3086_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2777bp|location=Sequence derived from alignment at Scaffold_68:48851..51708+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAGTGGCGCCGATGTTGCAGCAGAGGCTGCCGACGTCACCACTAGTAC
GCAGGGCAGAGTTGACAACCTGGAGAGCAAAGTTTCAGGCCTGCCGGACG
AGGTACAGCAGCTGGCTGGGCTGCTTCGATCCGCCCTCGGAAAGTTAGAG
AAGGAGGGGGAGTCCGGCGGCGCTGGGGTGGGCGCTGTCGTTACGGGCGA
TGCGCCCACCCGCGGTACCCAGGAGGGGGCACCGCAAAACGAGGGAATCA
CGCCACCCTCAGACCCGGCGGTTGGGCCGGGTGGCGGACGTGACAGGGGA
TCGCTCCCCCAAGGTGAGACAACCGAGACATATGGCGGCGGTACCGGTGG
TTTTGGCGGATTCGTCGGAGAAGGAGATGGTTTTCACCAGAACCCGTATA
GCAAAATGCGTGTGTCAGTGCACGCGCCGCGTCTCGAAGGCGGCCAGGGA
TATTGCTCGTGGAGGAGGGCCTTTATCCAGGCTGCTAAAACAGTAGACAT
GGACGGCCAGTTCGTAGGGGCCACGGAACCCCAGCCGGACGTCGGGGACA
TGAACAAACCCAAAGCTACGTTGCTGGCAGAGGGGTACTCCGAGGCGCAG
ATCCACCGCAGCCTCCAAGCTTTCCACTTTCTGTCCTCGGCCCTGGTGAG
GGAGCCAGACAAGGCCGTCTTCGGGAGATGTGTGACGCCGAAGCAGGCGT
TGGATGAACTCGACAAGGTGCACAACCCGGAATCGCAGGTAGCCACACAG
GAGTTGCTCAGCAAGTTTCAGAACTTCGCAATGCCGGCCGACAAAAACCC
GACTGAATCGCTTATCGCCATGGAGCAACTCGCAAGTCGTCTGAACGAGA
GAGGGGTCAAGGTCGAGGCTTCTTTCGTGCTGTCGCTCTTCCTTTCGGCC
CTACCGGCCGAGTACGACCATGCCAAACTGACTCTGCAGTCCGCACCGAC
TCTGGACCGGGGAGAGGTCATCAGAGTGGGATTACTCGTGAGCGCCGACA
ATGGCAGCGGCGGAAAAGCTGGTCGCAACCGCGGCCGCGGGGGACGCGGC
GGTGGCGGAAACGGCGAAAATGGCGGCAGCGGCAACGGCAACGGCAACGG
CGGTGGAGACGGCAGCAGCTACGGCGGCCGTCGTAGGGGCCGGTGCTACC
GGTGCAAGAGGCGAGGGCACCAGTCGTTCTCGTGCACTACCCCCATCGCC
GACTTCATGACCCAGTGCGAGAACTGCGACGGGTATGGACACGATAAGAG
CAAGTGCCCGTCGGCGAAGGACGAGGAGGAGGCGAAGGGCGAGACGGCGG
TCATGGCGGTTGCGGTGGCGAGCGATGACGAGGAGCTGGATGTGGCACGT
GAGGCCTTGTAAGAAGAAGCGGGGGAAAGACACAATATCCGCGCTGGTCA
CTACGCGCGCACCATCCACACACAGCAGCAGCAGGAGATGATGAAGATTG
CACCATTGCAACAGCGTGGAAGGGCGGAGACACAGAAAACCGGCGGCAAG
GCTGTGTGCCCCATGGCCGCGACGGGAGGGGCGTGGGGGGGGCAATATTG
AGAAGGATACGGCGAGATGGCCGTGCGCCCATAGCCGCGACGGGAGTGGC
GTGGGGGGGCAACATTCAGAGAACACGGCGGTAGGGCCGTGTGCCCACAG
CCGCGACGGGAGGGGCGCGGGAGGGCAACAACTAAAGAACACGGCGGTAG
GGCCGTGTGCTCGCAGCCGCGACGGGAGGGGCGCGGGAGGGCAACAACCA
AATAAAACGGCGGGAGGGCCGTGTGCTCGCAGCTGCGACGGGAGGGGCGC
GGGAGGGCGACAATCAATGCAGCCCCATAGCGCGTCGGGAGGGCGTGGGG
GGGAGGCAAACATTAGCCCCATGGCGCGTCGGACGGCGCGTGAGGGGGAG
AGAAAATCGAAGCAGTCCCGTGGCGCATCGGAAGGGGCGAGAGCGGGAAC
CCCGCGGCACGTCGGAAGGCGCGTGGGGGTAGGGTACTTGCATCGTGGTG
CTAAAACGGGAACTCCTTTTGTGGCGAGGCTACAGGCCGGGACGAGCGCT
GGGAGGGGAGGCACACGCATCACAGCGCTGGATTGTGGCAATTCTTTCTT
GACGGTATTTGGTGTTTGATGGTATTCGTAGCGAAGTTGGTAAATCCTCG
TGAGTTGTCATGACTGTACTTTGGTTGAAGAGCCAGGGAGGGTGTTCCGT
GTTTCTCGTAGGCGTTCGCGTCCACATGTTCAGTATTTCCTGATAGTCAT
TCGGTTGAGACCCTCATTGATTGCGGCTACGTGGTGCCGTTCTCTAGGTT
GCGCAATGTGCAGGAATATGGGATACCGTTGGAACCGCTGAAGGAGCGTA
GGAGGAAAAATTGGGACACCAGTGTTGTACTCCACGAGAGTAGAGGATTG
CCGAAAAATGCATGCCGGTTATGTGTCGCTCAGAAAATGTTGGATGATTG
CCTTCCGCCCCGGTGCGCTGTATTTCATCAGCGAGGGGGGGCGATTTCGA
TGTTTGTCTGATGTTTGTTTGAAGAACAATCAGTAGTGCAGCCGCATTGT
AGTTGTTTGAACCAACTCCTCAGGATAGTCTTGCACTTTTACTGCTTGCC
AAGCGTTGGGATAGGGCGTTTGATGGAACGGTGAATATTGGTTGGGGTTT
TGACCCGGAGGCCGGGTTTCCCCCTGTTGGTATTTTTCGTTGGTTTTTTG
TCCGTTTGATTTTTTGGTCACATCCGGCGTGTGAATGCCCACTAAGTGGT
TAGTTTCTATCGAAAAGAACCAGGGAG back to topprotein sequence of EsuBft3086_3a-0001 >EsuBft3086_3 ID=EsuBft3086_3|Name=EsuBft3086_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=453bp
MSGADVAAEAADVTTSTQGRVDNLESKVSGLPDEVQQLAGLLRSALGKLE
KEGESGGAGVGAVVTGDAPTRGTQEGAPQNEGITPPSDPAVGPGGGRDRG
SLPQGETTETYGGGTGGFGGFVGEGDGFHQNPYSKMRVSVHAPRLEGGQG
YCSWRRAFIQAAKTVDMDGQFVGATEPQPDVGDMNKPKATLLAEGYSEAQ
IHRSLQAFHFLSSALVREPDKAVFGRCVTPKQALDELDKVHNPESQVATQ
ELLSKFQNFAMPADKNPTESLIAMEQLASRLNERGVKVEASFVLSLFLSA
LPAEYDHAKLTLQSAPTLDRGEVIRVGLLVSADNGSGGKAGRNRGRGGRG
GGGNGENGGSGNGNGNGGGDGSSYGGRRRGRCYRCKRRGHQSFSCTTPIA
DFMTQCENCDGYGHDKSKCPSAKDEEEAKGETAVMAVAVASDDEELDVAR
EAL back to topmRNA from alignment at Scaffold_68:48851..51708+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft3086_3a-0001 ID=EsuBft3086_3a-0001|Name=EsuBft3086_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2858bp|location=Sequence derived from alignment at Scaffold_68:48851..51708+ (Ectocarpus subulatus male Bft15b)
ATGAGTGGCGCCGATGTTGCAGCAGAGGCTGCCGACGTCACCACTAGTAC
GCAGGGCAGAGTTGACAACCTGGAGAGCAAAGTTTCAGGCCTGCCGGACG
AGGTACAGCAGCTGGCTGGGCTGCTTCGATCCGCCCTCGGAAAGTTAGAG
AAGGAGGGGGAGTCCGGCGGCGCTGGGGTGGGCGCTGTCGTTACGGGCGA
TGCGCCCACCCGCGGTACCCAGGAGGGGGCACCGCAAAACGAGGGAATCA
CGCCACCCTCAGACCCGGCGGTTGGGCCGGGTGGCGGACGTGACAGGGGA
TCGCTCCCCCAAGGTGAGACAACCGAGACATATGGCGGCGGTACCGGTGG
TTTTGGCGGATTCGTCGGAGAAGGAGATGGTTTTCACCAGAACCCGTATA
GCAAAATGCGTGTGTCAGTGCACGCGCCGCGTCTCGAAGGCGGCCAGGGA
TATTGCTCGTGGAGGAGGGCCTTTATCCAGGCTGCTAAAACAGTAGACAT
GGACGGCCAGTTCGTAGGGGCCACGGAACCCCAGCCGGACGTCGGGGACA
TGAACAAACCCAAAGCTACGTTGCTGGCAGAGGGGTACTCCGAGGCGCAG
ATCCACCGCAGCCTCCAAGCTTTCCACTTTCTGTCCTCGGCCCTGGTGAG
GGAGCCAGACAAGGCCGTCTTCGGGAGATGTGTGACGCCGAAGCAGGCGT
TGGATGAACTCGACAAGGTGCACAACCCGGAATCGCAGGTAGCCACACAG
GAGTTGCTCAGCAAGTTTCAGAACTTCGCAATGCCGGCCGACAAAAACCC
GACTGAATCGCTTATCGCCATGGAGCAACTCGCAAGTCGTCTGAACGAGA
GAGGGGTCAAGGTCGAGGCTTCTTTCGTGCTGTCGCTCTTCCTTTCGGCC
CTACCGGCCGAGTACGACCATGCCAAACTGACTCTGCAGTCCGCACCGAC
TCTGGACCGGGGAGAGGTCATCAGAGTGGTGGGCTCCTAGCACTCCAGCA
TCAAGCAGGGGAAGAGCCATCGGAACAGCAACCGCAACAATCACAAGGCG
TCTGAGCAGGGATTACTCGTGAGCGCCGACAATGGCAGCGGCGGAAAAGC
TGGTCGCAACCGCGGCCGCGGGGGACGCGGCGGTGGCGGAAACGGCGAAA
ATGGCGGCAGCGGCAACGGCAACGGCAACGGCGGTGGAGACGGCAGCAGC
TACGGCGGCCGTCGTAGGGGCCGGTGCTACCGGTGCAAGAGGCGAGGGCA
CCAGTCGTTCTCGTGCACTACCCCCATCGCCGACTTCATGACCCAGTGCG
AGAACTGCGACGGGTATGGACACGATAAGAGCAAGTGCCCGTCGGCGAAG
GACGAGGAGGAGGCGAAGGGCGAGACGGCGGTCATGGCGGTTGCGGTGGC
GAGCGATGACGAGGAGCTGGATGTGGCACGTGAGGCCTTGTAAGAAGAAG
CGGGGGAAAGACACAATATCCGCGCTGGTCACTACGCGCGCACCATCCAC
ACACAGCAGCAGCAGGAGATGATGAAGATTGCACCATTGCAACAGCGTGG
AAGGGCGGAGACACAGAAAACCGGCGGCAAGGCTGTGTGCCCCATGGCCG
CGACGGGAGGGGCGTGGGGGGGGCAATATTGAGAAGGATACGGCGAGATG
GCCGTGCGCCCATAGCCGCGACGGGAGTGGCGTGGGGGGGCAACATTCAG
AGAACACGGCGGTAGGGCCGTGTGCCCACAGCCGCGACGGGAGGGGCGCG
GGAGGGCAACAACTAAAGAACACGGCGGTAGGGCCGTGTGCTCGCAGCCG
CGACGGGAGGGGCGCGGGAGGGCAACAACCAAATAAAACGGCGGGAGGGC
CGTGTGCTCGCAGCTGCGACGGGAGGGGCGCGGGAGGGCGACAATCAATG
CAGCCCCATAGCGCGTCGGGAGGGCGTGGGGGGGAGGCAAACATTAGCCC
CATGGCGCGTCGGACGGCGCGTGAGGGGGAGAGAAAATCGAAGCAGTCCC
GTGGCGCATCGGAAGGGGCGAGAGCGGGAACCCCGCGGCACGTCGGAAGG
CGCGTGGGGGTAGGGTACTTGCATCGTGGTGCTAAAACGGGAACTCCTTT
TGTGGCGAGGCTACAGGCCGGGACGAGCGCTGGGAGGGGAGGCACACGCA
TCACAGCGCTGGATTGTGGCAATTCTTTCTTGACGGTATTTGGTGTTTGA
TGGTATTCGTAGCGAAGTTGGTAAATCCTCGTGAGTTGTCATGACTGTAC
TTTGGTTGAAGAGCCAGGGAGGGTGTTCCGTGTTTCTCGTAGGCGTTCGC
GTCCACATGTTCAGTATTTCCTGATAGTCATTCGGTTGAGACCCTCATTG
ATTGCGGCTACGTGGTGCCGTTCTCTAGGTTGCGCAATGTGCAGGAATAT
GGGATACCGTTGGAACCGCTGAAGGAGCGTAGGAGGAAAAATTGGGACAC
CAGTGTTGTACTCCACGAGAGTAGAGGATTGCCGAAAAATGCATGCCGGT
TATGTGTCGCTCAGAAAATGTTGGATGATTGCCTTCCGCCCCGGTGCGCT
GTATTTCATCAGCGAGGGGGGGCGATTTCGATGTTTGTCTGATGTTTGTT
TGAAGAACAATCAGTAGTGCAGCCGCATTGTAGTTGTTTGAACCAACTCC
TCAGGATAGTCTTGCACTTTTACTGCTTGCCAAGCGTTGGGATAGGGCGT
TTGATGGAACGGTGAATATTGGTTGGGGTTTTGACCCGGAGGCCGGGTTT
CCCCCTGTTGGTATTTTTCGTTGGTTTTTTGTCCGTTTGATTTTTTGGTC
ACATCCGGCGTGTGAATGCCCACTAAGTGGTTAGTTTCTATCGAAAAGAA
CCAGGGAG back to topCoding sequence (CDS) from alignment at Scaffold_68:48851..51708+ >EsuBft3086_3a-0001 ID=EsuBft3086_3a-0001|Name=EsuBft3086_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1362bp|location=Sequence derived from alignment at Scaffold_68:48851..51708+ (Ectocarpus subulatus male Bft15b)
ATGAGTGGCGCCGATGTTGCAGCAGAGGCTGCCGACGTCACCACTAGTAC
GCAGGGCAGAGTTGACAACCTGGAGAGCAAAGTTTCAGGCCTGCCGGACG
AGGTACAGCAGCTGGCTGGGCTGCTTCGATCCGCCCTCGGAAAGTTAGAG
AAGGAGGGGGAGTCCGGCGGCGCTGGGGTGGGCGCTGTCGTTACGGGCGA
TGCGCCCACCCGCGGTACCCAGGAGGGGGCACCGCAAAACGAGGGAATCA
CGCCACCCTCAGACCCGGCGGTTGGGCCGGGTGGCGGACGTGACAGGGGA
TCGCTCCCCCAAGGTGAGACAACCGAGACATATGGCGGCGGTACCGGTGG
TTTTGGCGGATTCGTCGGAGAAGGAGATGGTTTTCACCAGAACCCGTATA
GCAAAATGCGTGTGTCAGTGCACGCGCCGCGTCTCGAAGGCGGCCAGGGA
TATTGCTCGTGGAGGAGGGCCTTTATCCAGGCTGCTAAAACAGTAGACAT
GGACGGCCAGTTCGTAGGGGCCACGGAACCCCAGCCGGACGTCGGGGACA
TGAACAAACCCAAAGCTACGTTGCTGGCAGAGGGGTACTCCGAGGCGCAG
ATCCACCGCAGCCTCCAAGCTTTCCACTTTCTGTCCTCGGCCCTGGTGAG
GGAGCCAGACAAGGCCGTCTTCGGGAGATGTGTGACGCCGAAGCAGGCGT
TGGATGAACTCGACAAGGTGCACAACCCGGAATCGCAGGTAGCCACACAG
GAGTTGCTCAGCAAGTTTCAGAACTTCGCAATGCCGGCCGACAAAAACCC
GACTGAATCGCTTATCGCCATGGAGCAACTCGCAAGTCGTCTGAACGAGA
GAGGGGTCAAGGTCGAGGCTTCTTTCGTGCTGTCGCTCTTCCTTTCGGCC
CTACCGGCCGAGTACGACCATGCCAAACTGACTCTGCAGTCCGCACCGAC
TCTGGACCGGGGAGAGGTCATCAGAGTGGGATTACTCGTGAGCGCCGACA
ATGGCAGCGGCGGAAAAGCTGGTCGCAACCGCGGCCGCGGGGGACGCGGC
GGTGGCGGAAACGGCGAAAATGGCGGCAGCGGCAACGGCAACGGCAACGG
CGGTGGAGACGGCAGCAGCTACGGCGGCCGTCGTAGGGGCCGGTGCTACC
GGTGCAAGAGGCGAGGGCACCAGTCGTTCTCGTGCACTACCCCCATCGCC
GACTTCATGACCCAGTGCGAGAACTGCGACGGGTATGGACACGATAAGAG
CAAGTGCCCGTCGGCGAAGGACGAGGAGGAGGCGAAGGGCGAGACGGCGG
TCATGGCGGTTGCGGTGGCGAGCGATGACGAGGAGCTGGATGTGGCACGT
GAGGCCTTGTAA back to top
|