EsuBft3079_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3079_2a-0001
Unique NameEsuBft3079_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_389contigScaffold_389:336190..338824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000000727
ProteomeIdEsuBft3079_2
Protein domainsSSF56672
Protein domainsCoil
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Notetransposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl33208|Metazoa
Length2497
Evalue1.77e-37
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3CYKV@33213|Bilateria,487I3@7711|Chordata,4962T@7742|Vertebrata,4CKCN@8459|Testudines
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00004,RC00039,RC00041
KEGG koko:K04257,ko:K13506
KEGG ReactionR00851,R09380
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04740,map00561,map00564,map01100,map01110,map04740
KEGG ModuleM00089
EC2.3.1.15
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04030
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3079_2aEsuBft3079_2aEctocarpus subulatus male Bft15bgeneScaffold_389 336190..338824 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3079_2a-0001-exonagat-exon-84751Ectocarpus subulatus male Bft15bexonScaffold_389 336190..338314 -
EsuBft3079_2a-0001-exonEsuBft3079_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_389 338453..338824 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3079_2a-0001-exonagat-three_prime_utr-12215Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_389 336190..337765 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3079_2a-0001-cdsEsuBft3079_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_389 337766..338314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3079_2a-0001EsuBft3079_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_389 337766..338824 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3079_2a-0001 ID=EsuBft3079_2a-0001|Name=EsuBft3079_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2497bp|location=Sequence derived from alignment at Scaffold_389:336190..338824- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGGCA
GAGAGGCTGGTACACGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTCTA
AGGAGATAAAGGCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAACAGC
GCCTTCGAGGCGACCCTGAAGGCGAGGCTCAAGGCTGCGCGGAAGAAGCG
CAGCATCGCGAGGTGGAGAGCACTGGAAACGTTCTTCGAGGGCTATGTAC
GGCAGCTCGAGAAGAAGAGCCGCGAGGGGCATCAGGCAGGTTTCTACAGG
CACCTCAAGATGATCGACGTCGAAGGTAAGAGGTCGTTCACCTCTCAGAA
CATCAAGGACGAGGACGGCAAGGCTGCCACCATTAAAGTGCTGTTCAAGA
AGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTCGCA
CACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTACACGACTGAGCCACTA
CTGCGAGCGAGAGGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCGCCCAC
ACCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCATGAGCTC
GCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTTGACCTCACCAA
GGCATACGATTCGGTGGACCGAGACCTACTGTGGGACTTGCTCCGACGTT
TCGGCGTGCCCCCGAAGATGCAGGCGGTCATTTGCCACTTCCACGAGGGC
ATGAGGGCGCGCTTCCGAACGGACGACGGGCAGTACTCAGAATGGTACGA
CGTGGGCGAAGGCCTCCGACAGGGATGCAACCTGGCCCTGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCC
AAGTGGTTGGCGATAGCAACGATGAGTCGATTGGTGCCTTTGCCAAGACC
ACCATTTGTTGAAAAAGCAGCAGTAAGGAGGGTAGATCTAGATGGATGGG
TTGAAAGTTCCCGCAAAGTGATTTTCCTTACTTGCAGCTCGATCTTCGAG
GGCGGATCCTGGCTTAAGGATCGACTTGTCGATGCTTCGACCCGCGGATG
GGTTGACGATTGTTACGTCTATGAGAATGGACTTGGTGCAGAGTTCCTCT
TCCTTCTCTCCTGCGTGTAATCCTGGGGGGATCACCAAATCCATCTTGTA
TAGCCCCTTTCCCCTACCAGTGCCTGTGGTAAAAGGGGAAGAATCCTCAA
CGGCGATGGGCATATGGCACTCGCGCAGTGTCTTGAGGACCACTCGAACC
ATCCTGTTATGGAGGAAGGTTGAGGCGCCGGTCTTGGTGCAGACGAGGGA
GTGGGCTCGGCTCAAGCGGTCCTTGCATGGTAACAAGGCACCTGCACCAC
AAAGTTTGCCTGTGTTGCAGTCTGCTCGATCGTGACTCCCCAGTACACGA
CCGATTGACTCTCGATATAGATCAGGCAGCATTCTTTCATCTGCTGACAA
CCCTTGCGTTGTCAACCACGACAAAACTCCCTTGCCTTTCGCTTCCTCCA
AGCGGAGCAACGCTCTCTTCTTTAGCGTTTCCTCGCCTACTACTTTCTGC
AAGTCTGTCTCCACCATGTGGCGCACTGCTGCATGAAGAGGTTTCGAAAG
GAGAGCTTGGGCTCCAAAGACTTGGTAGTGTTGACCAAATTCATTTCGGC
TGAAGGTAGACGGTGGTTGATGTTCTACGTCAGGGTTTCCATCTTCACGG
GGTTTTCCCGCCTTCCCTGCTTCCAACAAGTAAACTCCTTTGAGGGCGGG
GGTTAACTCATCACTTGTGGCAAGTTTAGCCCATGACTGCCCAACAGCTT
TTTCAAGCTTGTCTTTGGTGATTATTTCCTCTAGCTTCTTCAGCGAGTCA
ATCAGAGCCAATCCTGTCGGTAGCTGGGCAAGCCGGGGTAGACATTGCTC
AACTGTGTATCCTGTCGATGCTTGCACTGACTTGGAGAACACCAGCGCTT
GCCCTGCCACAAAAGCCGATTCTCGAATGAGAACATTGCTCGTGATTCCT
AGTCCTCCTTCTCGCATGGGTAGGTGCACCTGCGCCCGAGCTGTCCCTTT
GAAGAAATCTACCTCCTCGCTCTTCGTCGGGTCTGCGCGTACCTCTTTGA
CCGTTGGTATTCTCATGCTGTCGGCCATCTTGCCAAGGACGATCTTACTC
ATTGCCCACATCATCATGTTGTCATGTATTTTTGCGGCAGAGTTGGTGAT
AGACGGTGCAATCGTCCTCAGCAGATGGAACAAACGTGGCACACCAGACA
AACGCAGCAGTTGATAGCTGGCGGGGTCGCCAAGCGTTGCTAGGCGGAGT
ATCAATTCCGCCGGGTCACCACGGGCGATTTTGGAAGCGAATTTCCT
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protein sequence of EsuBft3079_2a-0001

>EsuBft3079_2 ID=EsuBft3079_2|Name=EsuBft3079_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=307bp
MSAAAETAPLARCARGQRGWYTSEAQHEISEASKEIKAAQQQLRGASKNS
AFEATLKARLKAARKKRSIARWRALETFFEGYVRQLEKKSREGHQAGFYR
HLKMIDVEGKRSFTSQNIKDEDGKAATIKVLFKKGDTMECGNYRGISLVA
HAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHEL
ARKKSTAVFACFVDLTKAYDSVDRDLLWDLLRRFGVPPKMQAVICHFHEG
MRARFRTDDGQYSEWYDVGEGLRQGCNLALXXXXXXXXXXXXXXXXXXXX
XXXXXXX
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mRNA from alignment at Scaffold_389:336190..338824-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3079_2a-0001 ID=EsuBft3079_2a-0001|Name=EsuBft3079_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2635bp|location=Sequence derived from alignment at Scaffold_389:336190..338824- (Ectocarpus subulatus male Bft15b)
ATGTCGGCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGGCA
GAGAGGCTGGTACACGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTCTA
AGGAGATAAAGGCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAACAGC
GCCTTCGAGGCGACCCTGAAGGCGAGGCTCAAGGCTGCGCGGAAGAAGCG
CAGCATCGCGAGGTGGAGAGCACTGGAAACGTTCTTCGAGGGCTATGTAC
GGCAGCTCGAGAAGAAGAGCCGCGAGGGGCATCAGGCAGGTTTCTACAGG
CACCTCAAGATGATCGACGTCGAAGGTAAGAGGTCGTTCACCTCTCAGAA
CATCAAGGACGAGGACGGCAAGGTCCTTCGGGACCCCACGTTTATTCGCC
AACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGNNCCGC
GAATTCCACGCCATTGTCGTGGACGTGTGGCAGACTGGGGACGTACCACA
GCAGTGAAAGGCTGCCACCATTAAAGTGCTGTTCAAGAAGGGGGACACGA
TGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAAG
GTGCTGCTTAAGGTCGTCGCTACACGACTGAGCCACTACTGCGAGCGAGA
GGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCGCCCACACCGGTCGACGC
TCGACATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAG
AGTACTGCGGTGTTCGCGTGCTTCGTTGACCTCACCAAGGCATACGATTC
GGTGGACCGAGACCTACTGTGGGACTTGCTCCGACGTTTCGGCGTGCCCC
CGAAGATGCAGGCGGTCATTTGCCACTTCCACGAGGGCATGAGGGCGCGC
TTCCGAACGGACGACGGGCAGTACTCAGAATGGTACGACGTGGGCGAAGG
CCTCCGACAGGGATGCAACCTGGCCCTGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAAGTGGTTGGCG
ATAGCAACGATGAGTCGATTGGTGCCTTTGCCAAGACCACCATTTGTTGA
AAAAGCAGCAGTAAGGAGGGTAGATCTAGATGGATGGGTTGAAAGTTCCC
GCAAAGTGATTTTCCTTACTTGCAGCTCGATCTTCGAGGGCGGATCCTGG
CTTAAGGATCGACTTGTCGATGCTTCGACCCGCGGATGGGTTGACGATTG
TTACGTCTATGAGAATGGACTTGGTGCAGAGTTCCTCTTCCTTCTCTCCT
GCGTGTAATCCTGGGGGGATCACCAAATCCATCTTGTATAGCCCCTTTCC
CCTACCAGTGCCTGTGGTAAAAGGGGAAGAATCCTCAACGGCGATGGGCA
TATGGCACTCGCGCAGTGTCTTGAGGACCACTCGAACCATCCTGTTATGG
AGGAAGGTTGAGGCGCCGGTCTTGGTGCAGACGAGGGAGTGGGCTCGGCT
CAAGCGGTCCTTGCATGGTAACAAGGCACCTGCACCACAAAGTTTGCCTG
TGTTGCAGTCTGCTCGATCGTGACTCCCCAGTACACGACCGATTGACTCT
CGATATAGATCAGGCAGCATTCTTTCATCTGCTGACAACCCTTGCGTTGT
CAACCACGACAAAACTCCCTTGCCTTTCGCTTCCTCCAAGCGGAGCAACG
CTCTCTTCTTTAGCGTTTCCTCGCCTACTACTTTCTGCAAGTCTGTCTCC
ACCATGTGGCGCACTGCTGCATGAAGAGGTTTCGAAAGGAGAGCTTGGGC
TCCAAAGACTTGGTAGTGTTGACCAAATTCATTTCGGCTGAAGGTAGACG
GTGGTTGATGTTCTACGTCAGGGTTTCCATCTTCACGGGGTTTTCCCGCC
TTCCCTGCTTCCAACAAGTAAACTCCTTTGAGGGCGGGGGTTAACTCATC
ACTTGTGGCAAGTTTAGCCCATGACTGCCCAACAGCTTTTTCAAGCTTGT
CTTTGGTGATTATTTCCTCTAGCTTCTTCAGCGAGTCAATCAGAGCCAAT
CCTGTCGGTAGCTGGGCAAGCCGGGGTAGACATTGCTCAACTGTGTATCC
TGTCGATGCTTGCACTGACTTGGAGAACACCAGCGCTTGCCCTGCCACAA
AAGCCGATTCTCGAATGAGAACATTGCTCGTGATTCCTAGTCCTCCTTCT
CGCATGGGTAGGTGCACCTGCGCCCGAGCTGTCCCTTTGAAGAAATCTAC
CTCCTCGCTCTTCGTCGGGTCTGCGCGTACCTCTTTGACCGTTGGTATTC
TCATGCTGTCGGCCATCTTGCCAAGGACGATCTTACTCATTGCCCACATC
ATCATGTTGTCATGTATTTTTGCGGCAGAGTTGGTGATAGACGGTGCAAT
CGTCCTCAGCAGATGGAACAAACGTGGCACACCAGACAAACGCAGCAGTT
GATAGCTGGCGGGGTCGCCAAGCGTTGCTAGGCGGAGTATCAATTCCGCC
GGGTCACCACGGGCGATTTTGGAAGCGAATTTCCT
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Coding sequence (CDS) from alignment at Scaffold_389:336190..338824-

>EsuBft3079_2a-0001 ID=EsuBft3079_2a-0001|Name=EsuBft3079_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=921bp|location=Sequence derived from alignment at Scaffold_389:336190..338824- (Ectocarpus subulatus male Bft15b)
ATGTCGGCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGGCA
GAGAGGCTGGTACACGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTCTA
AGGAGATAAAGGCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAACAGC
GCCTTCGAGGCGACCCTGAAGGCGAGGCTCAAGGCTGCGCGGAAGAAGCG
CAGCATCGCGAGGTGGAGAGCACTGGAAACGTTCTTCGAGGGCTATGTAC
GGCAGCTCGAGAAGAAGAGCCGCGAGGGGCATCAGGCAGGTTTCTACAGG
CACCTCAAGATGATCGACGTCGAAGGTAAGAGGTCGTTCACCTCTCAGAA
CATCAAGGACGAGGACGGCAAGGCTGCCACCATTAAAGTGCTGTTCAAGA
AGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTCGCA
CACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTACACGACTGAGCCACTA
CTGCGAGCGAGAGGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCGCCCAC
ACCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCATGAGCTC
GCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTTGACCTCACCAA
GGCATACGATTCGGTGGACCGAGACCTACTGTGGGACTTGCTCCGACGTT
TCGGCGTGCCCCCGAAGATGCAGGCGGTCATTTGCCACTTCCACGAGGGC
ATGAGGGCGCGCTTCCGAACGGACGACGGGCAGTACTCAGAATGGTACGA
CGTGGGCGAAGGCCTCCGACAGGGATGCAACCTGGCCCTGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNN
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