EsuBft3073_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3073_4a-0001
Unique Name	EsuBft3073_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_370	contig	Scaffold_370:187617..189486 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4530.OS08T0125300-01
ProteomeId	EsuBft3073_4
Protein domains	IPR012337
Protein domains	IPR001584
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	35493\|Streptophyta
Length	1870
Hectar predicted targeting category	other localisation
Evalue	8.5e-21
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,3M5VU@4447\|Liliopsida,3IIIB@38820\|Poales
Date last modified	2016-06-13
Date creation	2016-06-13
Description	gag-polypeptide of LTR copia-type
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3073_4a	EsuBft3073_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_370 187617..189486 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3073_4a-0001-exon	EsuBft3073_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 187617..189486 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3073_4a-0001-cds	EsuBft3073_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_370 187617..189455 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3073_4a-0001-exon	agat-five_prime_utr-7736	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_370 189456..189486 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3073_4a-0001	EsuBft3073_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_370 187617..189455 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_370:187617..189486-
coding sequence from alignment at Scaffold_370:187617..189486-

spliced messenger RNA

>EsuBft3073_4a-0001 ID=EsuBft3073_4a-0001|Name=EsuBft3073_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1870bp|location=Sequence derived from alignment at Scaffold_370:187617..189486- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGCAACAGTTTTACAAACAGCAGCCTGCACATGTACGACCTGCAAGAGA
TTCCCGCCAGTAGGAAGTATGTCGTTGAAGGTGATGGTCGACTGCTCGAA
GTGCAAGCTATCGGTTTCATCAATCTTAGTTTCTTTCAGGAGGATGAGAA
TGGTGAAAAAACGACCATGTGTGTAAAGCTCACTGACGTGTCTGTAGTAG
AGAGCCTAAGCTTCAACTTGTTTTCCACGCATGCTGTTTCTCGAAAGCAA
CAAATCCTGCACGACGAGCGTGGTGCAACCCTTCAAAATGGACTGCTCTT
TGCTAGGGAGGAAAAAGCGTCTGCAGCATATGCCATGCGGTTACCATACG
ACCCATCTGCGACTATAGTAGACTCTGCTGCTTTGCCTGCATTCGTGACT
GCCCCCGATTCCGCCCCCGCCGTTGGCTCCACGCGTTCCCCTTCCCAAAA
AGGGGGCTCCGCGGAATCATTGGTGTCCGTGTTGCGTGTTCCTTCCGCAG
GCTCTGCTACCGTAGTACCTTCGAGTGAGAGCGTCCCGCCCACTGGTCCC
ACCAGTGTAGTACCTGCGAGTGAGAGCGTCCCGCCCGCCGGCTCTGCCGA
CGTAGTACCTTCTTCGGCTTCCGAGTTTGTGTGTGTGGGTACTTTTCCTG
GTATGGATCTAGGAGATACGAGTGTGCTCACCGACGAGCAGCTCATGGAT
GGTTATGATGACACCCCATATCAAGATTTTTTCCCCGTATTTATCCCAGA
GAGTGACGCTGCGAATGTGGCTGGTGTTTTGGATAGCATTGATGGGGGTG
CTGATTTTGACTTGGGTGCGGCCGCGCTTGGCCCTGGTGCGTCCCCGTTT
GCTCTTGGTTCGACTGAAAAGTCCGTTGACATCAACCGCTTCCACCGCTC
CCTTGCCCACGCTTGCGAGCCTCTTTTGAGAGAAACTGCCCAGCAGAGAG
GCATCGTGCTCACCGGCAAGCTGGAACCGTGCACGGACTGCATGAAGGCG
AAGGGCAGGCGAGCGTCGGTGCCGCGGGGGCCGGGAGCGCGGGCGTCCAA
GCCTCTCGGGCGTGTTCACCTGGATCTGTGTGGACCGCTGGTGCCTTCCC
TGGGCGGCAACCTCTACCTGTTGGTCGCCGTGGACAGCGCCTCGCGGTGG
AACAAGGTCTACGGTCTCCGGCGGAAGTCCGACGCGCTGGCGGCAACGAA
AAGGCTGCTGGCGGACGTGGGGCGGTACGACCTCGGACGCATCGAGTGTT
TCCGCGTCGACAACGGCACCGAGTGGACCCGCGGCGATTTCCGGCGCTTC
TGCGACGACAACGGCATCGGCGTCGAGTTTACCCCGCCTGGCGTCCCGCA
ATACAACGGCGTCGTCGAGAGCGCCATCTGGCGCATCATGAAGGCCGGCA
TGGCCGCTCGCCGCAGNGGCGTCCCGCAGTACAACGGCGTCGTCGAGAGC
GCCATCTGGCGCATCATGAAGGCCGGCATGGCCGCCCGCCGCAGCGCTGG
CCGTGTGTTCGACGTCGACTTCGCCTCCATCCCCGGCCTCGACGAGCGCG
GTGACCGTCTTTGGATGGAATCGGCGAAGTGGGCCGCCGACGCTCTCAAC
CAGTCGGCGACCAAGGCCAACCCCGGGCGGCGCTCGCCGCACGAAATGTT
CACCGGCGAGCAAGGGCCGTTCCGCGTGCTGCCATTCTTCCAGCCCGGCT
TCATGCGCGAGGATTGCTGCACCAAGCTCGACGACCAGGCCACCCTCTGC
TACTACCTGAACGGCGGCGAAAACCACCCGAGCGGCACCGTCAAGGTCCT
CAAGGCGTCCACCGGCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGA
CGTCGGCGCCAGCCGGCTAG

protein sequence of EsuBft3073_4a-0001

>EsuBft3073_4 ID=EsuBft3073_4|Name=EsuBft3073_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=612bp
MYDLQEIPASRKYVVEGDGRLLEVQAIGFINLSFFQEDENGEKTTMCVKL
TDVSVVESLSFNLFSTHAVSRKQQILHDERGATLQNGLLFAREEKASAAY
AMRLPYDPSATIVDSAALPAFVTAPDSAPAVGSTRSPSQKGGSAESLVSV
LRVPSAGSATVVPSSESVPPTGPTSVVPASESVPPAGSADVVPSSASEFV
CVGTFPGMDLGDTSVLTDEQLMDGYDDTPYQDFFPVFIPESDAANVAGVL
DSIDGGADFDLGAAALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLR
ETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKPLGRVHLDLC
GPLVPSLGGNLYLLVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYD
LGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIW
RIMKAGMAARRXGVPQYNGVVESAIWRIMKAGMAARRSAGRVFDVDFASI
PGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVL
PFFQPGFMREDCCTKLDDQATLCYYLNGGENHPSGTVKVLKASTGRVVYT
NNVSWVTSAPAG

mRNA from alignment at Scaffold_370:187617..189486-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3073_4a-0001 ID=EsuBft3073_4a-0001|Name=EsuBft3073_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1870bp|location=Sequence derived from alignment at Scaffold_370:187617..189486- (Ectocarpus subulatus male Bft15b)
CAGCAACAGTTTTACAAACAGCAGCCTGCACATGTACGACCTGCAAGAGA
TTCCCGCCAGTAGGAAGTATGTCGTTGAAGGTGATGGTCGACTGCTCGAA
GTGCAAGCTATCGGTTTCATCAATCTTAGTTTCTTTCAGGAGGATGAGAA
TGGTGAAAAAACGACCATGTGTGTAAAGCTCACTGACGTGTCTGTAGTAG
AGAGCCTAAGCTTCAACTTGTTTTCCACGCATGCTGTTTCTCGAAAGCAA
CAAATCCTGCACGACGAGCGTGGTGCAACCCTTCAAAATGGACTGCTCTT
TGCTAGGGAGGAAAAAGCGTCTGCAGCATATGCCATGCGGTTACCATACG
ACCCATCTGCGACTATAGTAGACTCTGCTGCTTTGCCTGCATTCGTGACT
GCCCCCGATTCCGCCCCCGCCGTTGGCTCCACGCGTTCCCCTTCCCAAAA
AGGGGGCTCCGCGGAATCATTGGTGTCCGTGTTGCGTGTTCCTTCCGCAG
GCTCTGCTACCGTAGTACCTTCGAGTGAGAGCGTCCCGCCCACTGGTCCC
ACCAGTGTAGTACCTGCGAGTGAGAGCGTCCCGCCCGCCGGCTCTGCCGA
CGTAGTACCTTCTTCGGCTTCCGAGTTTGTGTGTGTGGGTACTTTTCCTG
GTATGGATCTAGGAGATACGAGTGTGCTCACCGACGAGCAGCTCATGGAT
GGTTATGATGACACCCCATATCAAGATTTTTTCCCCGTATTTATCCCAGA
GAGTGACGCTGCGAATGTGGCTGGTGTTTTGGATAGCATTGATGGGGGTG
CTGATTTTGACTTGGGTGCGGCCGCGCTTGGCCCTGGTGCGTCCCCGTTT
GCTCTTGGTTCGACTGAAAAGTCCGTTGACATCAACCGCTTCCACCGCTC
CCTTGCCCACGCTTGCGAGCCTCTTTTGAGAGAAACTGCCCAGCAGAGAG
GCATCGTGCTCACCGGCAAGCTGGAACCGTGCACGGACTGCATGAAGGCG
AAGGGCAGGCGAGCGTCGGTGCCGCGGGGGCCGGGAGCGCGGGCGTCCAA
GCCTCTCGGGCGTGTTCACCTGGATCTGTGTGGACCGCTGGTGCCTTCCC
TGGGCGGCAACCTCTACCTGTTGGTCGCCGTGGACAGCGCCTCGCGGTGG
AACAAGGTCTACGGTCTCCGGCGGAAGTCCGACGCGCTGGCGGCAACGAA
AAGGCTGCTGGCGGACGTGGGGCGGTACGACCTCGGACGCATCGAGTGTT
TCCGCGTCGACAACGGCACCGAGTGGACCCGCGGCGATTTCCGGCGCTTC
TGCGACGACAACGGCATCGGCGTCGAGTTTACCCCGCCTGGCGTCCCGCA
ATACAACGGCGTCGTCGAGAGCGCCATCTGGCGCATCATGAAGGCCGGCA
TGGCCGCTCGCCGCAGNGGCGTCCCGCAGTACAACGGCGTCGTCGAGAGC
GCCATCTGGCGCATCATGAAGGCCGGCATGGCCGCCCGCCGCAGCGCTGG
CCGTGTGTTCGACGTCGACTTCGCCTCCATCCCCGGCCTCGACGAGCGCG
GTGACCGTCTTTGGATGGAATCGGCGAAGTGGGCCGCCGACGCTCTCAAC
CAGTCGGCGACCAAGGCCAACCCCGGGCGGCGCTCGCCGCACGAAATGTT
CACCGGCGAGCAAGGGCCGTTCCGCGTGCTGCCATTCTTCCAGCCCGGCT
TCATGCGCGAGGATTGCTGCACCAAGCTCGACGACCAGGCCACCCTCTGC
TACTACCTGAACGGCGGCGAAAACCACCCGAGCGGCACCGTCAAGGTCCT
CAAGGCGTCCACCGGCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGA
CGTCGGCGCCAGCCGGCTAG

Coding sequence (CDS) from alignment at Scaffold_370:187617..189486-

>EsuBft3073_4a-0001 ID=EsuBft3073_4a-0001|Name=EsuBft3073_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1839bp|location=Sequence derived from alignment at Scaffold_370:187617..189486- (Ectocarpus subulatus male Bft15b)
ATGTACGACCTGCAAGAGATTCCCGCCAGTAGGAAGTATGTCGTTGAAGG
TGATGGTCGACTGCTCGAAGTGCAAGCTATCGGTTTCATCAATCTTAGTT
TCTTTCAGGAGGATGAGAATGGTGAAAAAACGACCATGTGTGTAAAGCTC
ACTGACGTGTCTGTAGTAGAGAGCCTAAGCTTCAACTTGTTTTCCACGCA
TGCTGTTTCTCGAAAGCAACAAATCCTGCACGACGAGCGTGGTGCAACCC
TTCAAAATGGACTGCTCTTTGCTAGGGAGGAAAAAGCGTCTGCAGCATAT
GCCATGCGGTTACCATACGACCCATCTGCGACTATAGTAGACTCTGCTGC
TTTGCCTGCATTCGTGACTGCCCCCGATTCCGCCCCCGCCGTTGGCTCCA
CGCGTTCCCCTTCCCAAAAAGGGGGCTCCGCGGAATCATTGGTGTCCGTG
TTGCGTGTTCCTTCCGCAGGCTCTGCTACCGTAGTACCTTCGAGTGAGAG
CGTCCCGCCCACTGGTCCCACCAGTGTAGTACCTGCGAGTGAGAGCGTCC
CGCCCGCCGGCTCTGCCGACGTAGTACCTTCTTCGGCTTCCGAGTTTGTG
TGTGTGGGTACTTTTCCTGGTATGGATCTAGGAGATACGAGTGTGCTCAC
CGACGAGCAGCTCATGGATGGTTATGATGACACCCCATATCAAGATTTTT
TCCCCGTATTTATCCCAGAGAGTGACGCTGCGAATGTGGCTGGTGTTTTG
GATAGCATTGATGGGGGTGCTGATTTTGACTTGGGTGCGGCCGCGCTTGG
CCCTGGTGCGTCCCCGTTTGCTCTTGGTTCGACTGAAAAGTCCGTTGACA
TCAACCGCTTCCACCGCTCCCTTGCCCACGCTTGCGAGCCTCTTTTGAGA
GAAACTGCCCAGCAGAGAGGCATCGTGCTCACCGGCAAGCTGGAACCGTG
CACGGACTGCATGAAGGCGAAGGGCAGGCGAGCGTCGGTGCCGCGGGGGC
CGGGAGCGCGGGCGTCCAAGCCTCTCGGGCGTGTTCACCTGGATCTGTGT
GGACCGCTGGTGCCTTCCCTGGGCGGCAACCTCTACCTGTTGGTCGCCGT
GGACAGCGCCTCGCGGTGGAACAAGGTCTACGGTCTCCGGCGGAAGTCCG
ACGCGCTGGCGGCAACGAAAAGGCTGCTGGCGGACGTGGGGCGGTACGAC
CTCGGACGCATCGAGTGTTTCCGCGTCGACAACGGCACCGAGTGGACCCG
CGGCGATTTCCGGCGCTTCTGCGACGACAACGGCATCGGCGTCGAGTTTA
CCCCGCCTGGCGTCCCGCAATACAACGGCGTCGTCGAGAGCGCCATCTGG
CGCATCATGAAGGCCGGCATGGCCGCTCGCCGCAGNGGCGTCCCGCAGTA
CAACGGCGTCGTCGAGAGCGCCATCTGGCGCATCATGAAGGCCGGCATGG
CCGCCCGCCGCAGCGCTGGCCGTGTGTTCGACGTCGACTTCGCCTCCATC
CCCGGCCTCGACGAGCGCGGTGACCGTCTTTGGATGGAATCGGCGAAGTG
GGCCGCCGACGCTCTCAACCAGTCGGCGACCAAGGCCAACCCCGGGCGGC
GCTCGCCGCACGAAATGTTCACCGGCGAGCAAGGGCCGTTCCGCGTGCTG
CCATTCTTCCAGCCCGGCTTCATGCGCGAGGATTGCTGCACCAAGCTCGA
CGACCAGGCCACCCTCTGCTACTACCTGAACGGCGGCGAAAACCACCCGA
GCGGCACCGTCAAGGTCCTCAAGGCGTCCACCGGCCGCGTCGTCTACACC
AACAACGTGTCGTGGGTGACGTCGGCGCCAGCCGGCTAG