EsuBft3073_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3073_3a-0001
Unique Name	EsuBft3073_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_370	contig	Scaffold_370:184123..185556 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft3073_3
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-TM
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	143
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3073_3a	EsuBft3073_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_370 184123..185556 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3073_3a-0001-exon	EsuBft3073_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 184123..185556 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3073_3a-0001-cds	EsuBft3073_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_370 184123..185556 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3073_3a-0001	EsuBft3073_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_370 184123..185556 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_370:184123..185556+
coding sequence from alignment at Scaffold_370:184123..185556+

spliced messenger RNA

>EsuBft3073_3a-0001 ID=EsuBft3073_3a-0001|Name=EsuBft3073_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1434bp|location=Sequence derived from alignment at Scaffold_370:184123..185556+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTGTTTTCCCCTGCGGCGGCGGCGGGGGGGATGGCCGGAGGCCC
CGCGGTGGCGGCCGGAGCGGCCGCATCGGCGGCAGCTCCAGCAGCGACGG
CAGCGACCCCCGGTGGCAGTGTTCCCCCCGCGGCGGCGGCGGGGGGGATG
GCCGGAGGCCCCGCGGTGGCGGCCGGAGCGGCCGCATCGGCGGCAGCTCC
AGCAGCGACGGCAGCGACCCCCGGTGGCAGTGTTCCCCCCGCGGCGGCCG
CGGAGGGGGTGGCCGGAGTCCTCGCGGTGGTAGCAGGAGCAGCGGCATCG
GTGGAAGCTCCAGCGGCGACGGCGGCGGTCTCCGGTGGCAGTGTTCCCCC
CGCGGCGGCGGCGGCGGAGGAGGTGGCCGGAGTCCCTGCAGTGGCGGCAG
AAGCGGTGGCATCGGGAGCAGCTCCAGAGGCGACGGCGGCGACCTACGGC
GGCGGTAGTGTTTCCCTCGCAGCGACGGCGGGGGCAGCGCCTGGAGGGCT
CGCGGCGGCAGCTGAAGCAGCGGCATCGGGAGCAGCTCCAGAGGCGACGG
CGGCGACCTACGGCGGCGGTAGTGTTTCCCTCGCAGCGACGGCGGGGGCA
GCGCCTGGAGGGCTCGCGGCGGCAGCTGAAGCAGCGGCATCGGGAGCAGC
TCCAGAGGCGACGGCGGCGACCTACGGCGGCGGTAGTGTTTCCCTCGCAG
CGACGGCGGGGGCAGCGCCTGGAGGGCTCGCGGCGGCAGCTGAAGCAGCG
GCATCGGGAGCAGCTCCAGCGGCGGCGGCGGCGGTGCCCGGCGACACTGT
TATCTCCGCGACGGTGGCGGGGAGAACGACCAGAGCGCCCGCGTTGGTGG
TTGGAGCGTCGGCATCGACGGCGGTTCCAGCGGCCATGGCGGCGGGACCT
GACCGTGTTGTTTCTCGTGCTGCGGCGGCAGGCAGAATGGCTCGAGAGCC
CGCGCAGGTGGCTACAGCGGTGGCATCGGCGGCTGGAGTGGGGACATCGG
TGACGGCACCACCCGCGACCGTGGCGACGGCACCGGTCGTTACGATGGTG
ACCGTCGGTGACGTTTCCCCCACCATATCGGTTGGGGGGGTGGCCAGCAA
CGGAGAAGCGGTGGTGAACGGCATCGACGACGGCAGCGATGATGGCGCTT
GGTGCGCAGGTGAGGTTGGTGACTGCTGGGATGACAGCGTCTGTGGCGAG
AGGGGGGCGTCCACGCACCCTTTCGATCCCGGCACCGTGTGTTCGGGGGT
GCGCGGCACCGACGATCCCGGGGTGGACGACCTGGTCGGTGGCTCCGTCA
GCAGCAGCGGCAGCTGCAGCAGCGGCACCAGCACCAGCAGCGGCAGTAAT
AGCAATGACAAGGCAGAGGGGATTGATGTGGACTGGTTTCGGGTCTGCTG
CGCCCCTCCGACCCGTGGAAGCTGTACCGGCTGA

protein sequence of EsuBft3073_3a-0001

>EsuBft3073_3 ID=EsuBft3073_3|Name=EsuBft3073_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=477bp
MVVFSPAAAAGGMAGGPAVAAGAAASAAAPAATAATPGGSVPPAAAAGGM
AGGPAVAAGAAASAAAPAATAATPGGSVPPAAAAEGVAGVLAVVAGAAAS
VEAPAATAAVSGGSVPPAAAAAEEVAGVPAVAAEAVASGAAPEATAATYG
GGSVSLAATAGAAPGGLAAAAEAAASGAAPEATAATYGGGSVSLAATAGA
APGGLAAAAEAAASGAAPEATAATYGGGSVSLAATAGAAPGGLAAAAEAA
ASGAAPAAAAAVPGDTVISATVAGRTTRAPALVVGASASTAVPAAMAAGP
DRVVSRAAAAGRMAREPAQVATAVASAAGVGTSVTAPPATVATAPVVTMV
TVGDVSPTISVGGVASNGEAVVNGIDDGSDDGAWCAGEVGDCWDDSVCGE
RGASTHPFDPGTVCSGVRGTDDPGVDDLVGGSVSSSGSCSSGTSTSSGSN
SNDKAEGIDVDWFRVCCAPPTRGSCTG

mRNA from alignment at Scaffold_370:184123..185556+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3073_3a-0001 ID=EsuBft3073_3a-0001|Name=EsuBft3073_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1434bp|location=Sequence derived from alignment at Scaffold_370:184123..185556+ (Ectocarpus subulatus male Bft15b)
ATGGTCGTGTTTTCCCCTGCGGCGGCGGCGGGGGGGATGGCCGGAGGCCC
CGCGGTGGCGGCCGGAGCGGCCGCATCGGCGGCAGCTCCAGCAGCGACGG
CAGCGACCCCCGGTGGCAGTGTTCCCCCCGCGGCGGCGGCGGGGGGGATG
GCCGGAGGCCCCGCGGTGGCGGCCGGAGCGGCCGCATCGGCGGCAGCTCC
AGCAGCGACGGCAGCGACCCCCGGTGGCAGTGTTCCCCCCGCGGCGGCCG
CGGAGGGGGTGGCCGGAGTCCTCGCGGTGGTAGCAGGAGCAGCGGCATCG
GTGGAAGCTCCAGCGGCGACGGCGGCGGTCTCCGGTGGCAGTGTTCCCCC
CGCGGCGGCGGCGGCGGAGGAGGTGGCCGGAGTCCCTGCAGTGGCGGCAG
AAGCGGTGGCATCGGGAGCAGCTCCAGAGGCGACGGCGGCGACCTACGGC
GGCGGTAGTGTTTCCCTCGCAGCGACGGCGGGGGCAGCGCCTGGAGGGCT
CGCGGCGGCAGCTGAAGCAGCGGCATCGGGAGCAGCTCCAGAGGCGACGG
CGGCGACCTACGGCGGCGGTAGTGTTTCCCTCGCAGCGACGGCGGGGGCA
GCGCCTGGAGGGCTCGCGGCGGCAGCTGAAGCAGCGGCATCGGGAGCAGC
TCCAGAGGCGACGGCGGCGACCTACGGCGGCGGTAGTGTTTCCCTCGCAG
CGACGGCGGGGGCAGCGCCTGGAGGGCTCGCGGCGGCAGCTGAAGCAGCG
GCATCGGGAGCAGCTCCAGCGGCGGCGGCGGCGGTGCCCGGCGACACTGT
TATCTCCGCGACGGTGGCGGGGAGAACGACCAGAGCGCCCGCGTTGGTGG
TTGGAGCGTCGGCATCGACGGCGGTTCCAGCGGCCATGGCGGCGGGACCT
GACCGTGTTGTTTCTCGTGCTGCGGCGGCAGGCAGAATGGCTCGAGAGCC
CGCGCAGGTGGCTACAGCGGTGGCATCGGCGGCTGGAGTGGGGACATCGG
TGACGGCACCACCCGCGACCGTGGCGACGGCACCGGTCGTTACGATGGTG
ACCGTCGGTGACGTTTCCCCCACCATATCGGTTGGGGGGGTGGCCAGCAA
CGGAGAAGCGGTGGTGAACGGCATCGACGACGGCAGCGATGATGGCGCTT
GGTGCGCAGGTGAGGTTGGTGACTGCTGGGATGACAGCGTCTGTGGCGAG
AGGGGGGCGTCCACGCACCCTTTCGATCCCGGCACCGTGTGTTCGGGGGT
GCGCGGCACCGACGATCCCGGGGTGGACGACCTGGTCGGTGGCTCCGTCA
GCAGCAGCGGCAGCTGCAGCAGCGGCACCAGCACCAGCAGCGGCAGTAAT
AGCAATGACAAGGCAGAGGGGATTGATGTGGACTGGTTTCGGGTCTGCTG
CGCCCCTCCGACCCGTGGAAGCTGTACCGGCTGA

Coding sequence (CDS) from alignment at Scaffold_370:184123..185556+

>EsuBft3073_3a-0001 ID=EsuBft3073_3a-0001|Name=EsuBft3073_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1434bp|location=Sequence derived from alignment at Scaffold_370:184123..185556+ (Ectocarpus subulatus male Bft15b)
ATGGTCGTGTTTTCCCCTGCGGCGGCGGCGGGGGGGATGGCCGGAGGCCC
CGCGGTGGCGGCCGGAGCGGCCGCATCGGCGGCAGCTCCAGCAGCGACGG
CAGCGACCCCCGGTGGCAGTGTTCCCCCCGCGGCGGCGGCGGGGGGGATG
GCCGGAGGCCCCGCGGTGGCGGCCGGAGCGGCCGCATCGGCGGCAGCTCC
AGCAGCGACGGCAGCGACCCCCGGTGGCAGTGTTCCCCCCGCGGCGGCCG
CGGAGGGGGTGGCCGGAGTCCTCGCGGTGGTAGCAGGAGCAGCGGCATCG
GTGGAAGCTCCAGCGGCGACGGCGGCGGTCTCCGGTGGCAGTGTTCCCCC
CGCGGCGGCGGCGGCGGAGGAGGTGGCCGGAGTCCCTGCAGTGGCGGCAG
AAGCGGTGGCATCGGGAGCAGCTCCAGAGGCGACGGCGGCGACCTACGGC
GGCGGTAGTGTTTCCCTCGCAGCGACGGCGGGGGCAGCGCCTGGAGGGCT
CGCGGCGGCAGCTGAAGCAGCGGCATCGGGAGCAGCTCCAGAGGCGACGG
CGGCGACCTACGGCGGCGGTAGTGTTTCCCTCGCAGCGACGGCGGGGGCA
GCGCCTGGAGGGCTCGCGGCGGCAGCTGAAGCAGCGGCATCGGGAGCAGC
TCCAGAGGCGACGGCGGCGACCTACGGCGGCGGTAGTGTTTCCCTCGCAG
CGACGGCGGGGGCAGCGCCTGGAGGGCTCGCGGCGGCAGCTGAAGCAGCG
GCATCGGGAGCAGCTCCAGCGGCGGCGGCGGCGGTGCCCGGCGACACTGT
TATCTCCGCGACGGTGGCGGGGAGAACGACCAGAGCGCCCGCGTTGGTGG
TTGGAGCGTCGGCATCGACGGCGGTTCCAGCGGCCATGGCGGCGGGACCT
GACCGTGTTGTTTCTCGTGCTGCGGCGGCAGGCAGAATGGCTCGAGAGCC
CGCGCAGGTGGCTACAGCGGTGGCATCGGCGGCTGGAGTGGGGACATCGG
TGACGGCACCACCCGCGACCGTGGCGACGGCACCGGTCGTTACGATGGTG
ACCGTCGGTGACGTTTCCCCCACCATATCGGTTGGGGGGGTGGCCAGCAA
CGGAGAAGCGGTGGTGAACGGCATCGACGACGGCAGCGATGATGGCGCTT
GGTGCGCAGGTGAGGTTGGTGACTGCTGGGATGACAGCGTCTGTGGCGAG
AGGGGGGCGTCCACGCACCCTTTCGATCCCGGCACCGTGTGTTCGGGGGT
GCGCGGCACCGACGATCCCGGGGTGGACGACCTGGTCGGTGGCTCCGTCA
GCAGCAGCGGCAGCTGCAGCAGCGGCACCAGCACCAGCAGCGGCAGTAAT
AGCAATGACAAGGCAGAGGGGATTGATGTGGACTGGTTTCGGGTCTGCTG
CGCCCCTCCGACCCGTGGAAGCTGTACCGGCTGA