EsuBft3073_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3073_2a-0001
Unique NameEsuBft3073_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:182476..183580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3073_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length92
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3073_2aEsuBft3073_2aEctocarpus subulatus male Bft15bgeneScaffold_370 182476..183580 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3073_2a-0001-exonEsuBft3073_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 182476..182877 -
EsuBft3073_2a-0001-exonagat-exon-45951Ectocarpus subulatus male Bft15bexonScaffold_370 183059..183580 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3073_2a-0001-exonagat-three_prime_utr-12204Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 182476..182877 -
EsuBft3073_2a-0001-exonagat-three_prime_utr-12205Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 183059..183346 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3073_2a-0001-cdsEsuBft3073_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 183347..183580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3073_2a-0001EsuBft3073_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 183347..183580 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3073_2a-0001 ID=EsuBft3073_2a-0001|Name=EsuBft3073_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=924bp|location=Sequence derived from alignment at Scaffold_370:182476..183580- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGGCAACACGCAGCTGGCAACGAGCGTTCCAAAGCTGCTGCTGTT
GTGGTTGCTGCTGCCTAAGACTCCCAACTTGGCAGCCTCCACAGCTCTAA
GCGCCTTCACCAGCCTCTCCACCTCCGACTCGGCAGCTCGTAGCTTCTCT
GCTGCGTTGCGCGACCTCTCCTCCACAGCTCTAAGCTTCTCTGCTGCGTT
GCGTGATCTTTCCTCCATCTTCGTGCGAAAATGATGTTCGAAAGCAATTA
TTCGTGACATGTACATGCACATGCATGTACGATCTCACCAAGCTCGAAGC
AAAAGTTGTGGCGTACCACAACAATCAATAAACACACAACAACCGTGTCC
AAGTCCTCAATACAGATGAACGGTTGGTGTGGTATCCGAGCTATGCTACG
GTAGGGGGGATACCCCTCGTGACCGGCTTTTTGTAATCAATTAGCTATTG
GGCCCGTGTTGTGTGACGCTCTCCAATACTTATTGTTATTGCAATCAATC
AGTGACTGACACGGGAACACAAGAATACCTGCCGTATGCTATACTCCTTT
ATGTATGTCCTTGTATTGCCTTCGGCCTCTGTGCTGTGTTTCTTTTTTTT
TTTTTTTTCATGACCTCCCTGCCTGCTCTGCTGTGTTGGGTACCTTGATC
TCGCTTTGCTGTTGCCTCTGTTTTTTTGTACGGCTGGCTGTCTGCCCATC
TGCCGCCTCTTTGCCCTGTTTGCTCCGTTACTCCCATGCCCTGGTGCGCA
GTGCCTGGTGCTGGTACGTTACGTTACCCTTTCATTTTTTCTTTCGGCGC
GTGCTCCTTTATTTTTATTTTTTTATTATTTTTGTTTTGTTTTATTTTGA
TCAGTGTCCGAGGGCTCTTTTCTCGAACAGTAGGTGCGATACCTGTTCTT
TTCTTTCTTTCGATCATTTTGTTT
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protein sequence of EsuBft3073_2a-0001

>EsuBft3073_2 ID=EsuBft3073_2|Name=EsuBft3073_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=77bp
MLGNTQLATSVPKLLLLWLLLPKTPNLAASTALSAFTSLSTSDSAARSFS
AALRDLSSTALSFSAALRDLSSIFVRK
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mRNA from alignment at Scaffold_370:182476..183580-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3073_2a-0001 ID=EsuBft3073_2a-0001|Name=EsuBft3073_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1105bp|location=Sequence derived from alignment at Scaffold_370:182476..183580- (Ectocarpus subulatus male Bft15b)
ATGCTGGGCAACACGCAGCTGGCAACGAGCGTTCCAAAGCTGCTGCTGTT
GTGGTTGCTGCTGCCTAAGACTCCCAACTTGGCAGCCTCCACAGCTCTAA
GCGCCTTCACCAGCCTCTCCACCTCCGACTCGGCAGCTCGTAGCTTCTCT
GCTGCGTTGCGCGACCTCTCCTCCACAGCTCTAAGCTTCTCTGCTGCGTT
GCGTGATCTTTCCTCCATCTTCGTGCGAAAATGATGTTCGAAAGCAATTA
TTCGTGACATGTACATGCACATGCATGTACGATCTCACCAAGCTCGAAGC
AAAAGTTGTGGCGTACCACAACAATCAATAAACACACAACAACCGTGTCC
AAGTCCTCAATACAGATGAACGGTTGGTGTGGTATCCGAGCTATGCTACG
GTAGGGGGGATACCCCTCGTGACCGGCTTTTTGTAATCAATTAGCTATTG
GGCCCGTGTTGTGTGACGCTCTCCAATACTTATTGTTATTGCAATCAATC
AGTGACTGACACGGGAACACAAGTAAGTGTGCCTACAGAATTGGTGTACT
CTGGCTGGTCAAATATAGCGCAGTCCTGTGGTGTCGGTCACACATGCCCC
ATAATATGACCCCCCTACCGTAGCATCGCTCATCCACGAAATGTGATACA
AAAGGTGTTATGCCTAAAAGGTGATCTACCGTTCACCTGTGAGAGACAGG
CAGGAATACCTGCCGTATGCTATACTCCTTTATGTATGTCCTTGTATTGC
CTTCGGCCTCTGTGCTGTGTTTCTTTTTTTTTTTTTTTTCATGACCTCCC
TGCCTGCTCTGCTGTGTTGGGTACCTTGATCTCGCTTTGCTGTTGCCTCT
GTTTTTTTGTACGGCTGGCTGTCTGCCCATCTGCCGCCTCTTTGCCCTGT
TTGCTCCGTTACTCCCATGCCCTGGTGCGCAGTGCCTGGTGCTGGTACGT
TACGTTACCCTTTCATTTTTTCTTTCGGCGCGTGCTCCTTTATTTTTATT
TTTTTATTATTTTTGTTTTGTTTTATTTTGATCAGTGTCCGAGGGCTCTT
TTCTCGAACAGTAGGTGCGATACCTGTTCTTTTCTTTCTTTCGATCATTT
TGTTT
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Coding sequence (CDS) from alignment at Scaffold_370:182476..183580-

>EsuBft3073_2a-0001 ID=EsuBft3073_2a-0001|Name=EsuBft3073_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=234bp|location=Sequence derived from alignment at Scaffold_370:182476..183580- (Ectocarpus subulatus male Bft15b)
ATGCTGGGCAACACGCAGCTGGCAACGAGCGTTCCAAAGCTGCTGCTGTT
GTGGTTGCTGCTGCCTAAGACTCCCAACTTGGCAGCCTCCACAGCTCTAA
GCGCCTTCACCAGCCTCTCCACCTCCGACTCGGCAGCTCGTAGCTTCTCT
GCTGCGTTGCGCGACCTCTCCTCCACAGCTCTAAGCTTCTCTGCTGCGTT
GCGTGATCTTTCCTCCATCTTCGTGCGAAAATGA
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