EsuBft3034_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3034_5a-0001
Unique NameEsuBft3034_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_437contigScaffold_437:53541..54297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3034_5
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length75
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3034_5aEsuBft3034_5aEctocarpus subulatus male Bft15bgeneScaffold_437 53541..54297 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3034_5a-0001-exonEsuBft3034_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_437 53541..54297 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3034_5a-0001-exonagat-five_prime_utr-7653Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_437 53541..53591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3034_5a-0001-cdsEsuBft3034_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_437 53592..53894 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3034_5a-0001-exonagat-three_prime_utr-12061Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_437 53895..54297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3034_5a-0001EsuBft3034_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_437 53592..53894 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3034_5a-0001 ID=EsuBft3034_5a-0001|Name=EsuBft3034_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=757bp|location=Sequence derived from alignment at Scaffold_437:53541..54297+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTGGTCTAGGAGAGGCCCT
CATGGCCTTCAACATAGGAGACGAAAGGGAAGGGGGTAAATGGAAAGAGA
GCGCCAAGGACACGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCA
TGGTTCATGAGGAAATGGCACAGGCAGGAGGTGGAAGCGTCTGCGAAGCG
CCAGCGCGCAAGGAAAGCACAAGCAGAGAGTACGGCCATCTCAGGACCGA
AGAGAAAGAGAGCGGTGGGGGGGAAGAAACGGCGACCGGGCACTGCTGTA
GAAGCGAGTAGGGCGGCCGAGGCAGCACTTGTGGCGATCTATGTACCCGG
CTGATGCTGTTGCGCCCTGTTTCCCTCCCTGCTGTATGCTATTCTCCTCT
ATGTATGTCCTTTGTATTGCCTTCGTCCTCTGTGCTGTGCTTCGTTTTTT
CATGACCTCCCTGCCTACTCTGCTGTGTTGGGTACCTTGATCTCGCTTTT
GCGGTTGCCTTTGTTTTTGTACGTCTGGCTGTCTGCCCATCTGCCGCCTC
TTTGTCTTGTTTGCTCCGTCACTCCCATGCCCTGGTGCGTAGTGCCTGGT
GCTGGTACGTTACACTTTGATTTTTTCATTGGGCGGGTGTGGGAAGCGTC
CTCCTTTATTTTTGTTTTTGTTTTACTTTGATCGGTTCCCGAGGGCTCTT
TTCTCGAACGGTCGGTGCGATACCTGTTCTTTTCTTTCTATCATTTTGTT
GTCTTTT
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protein sequence of EsuBft3034_5a-0001

>EsuBft3034_5 ID=EsuBft3034_5|Name=EsuBft3034_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=100bp
MAFNIGDEREGGKWKESAKDTEVWYNKVEDGAAWFMRKWHRQEVEASAKR
QRARKAQAESTAISGPKRKRAVGGKKRRPGTAVEASRAAEAALVAIYVPG
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mRNA from alignment at Scaffold_437:53541..54297+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3034_5a-0001 ID=EsuBft3034_5a-0001|Name=EsuBft3034_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=757bp|location=Sequence derived from alignment at Scaffold_437:53541..54297+ (Ectocarpus subulatus male Bft15b)
TACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTGGTCTAGGAGAGGCCCT
CATGGCCTTCAACATAGGAGACGAAAGGGAAGGGGGTAAATGGAAAGAGA
GCGCCAAGGACACGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCA
TGGTTCATGAGGAAATGGCACAGGCAGGAGGTGGAAGCGTCTGCGAAGCG
CCAGCGCGCAAGGAAAGCACAAGCAGAGAGTACGGCCATCTCAGGACCGA
AGAGAAAGAGAGCGGTGGGGGGGAAGAAACGGCGACCGGGCACTGCTGTA
GAAGCGAGTAGGGCGGCCGAGGCAGCACTTGTGGCGATCTATGTACCCGG
CTGATGCTGTTGCGCCCTGTTTCCCTCCCTGCTGTATGCTATTCTCCTCT
ATGTATGTCCTTTGTATTGCCTTCGTCCTCTGTGCTGTGCTTCGTTTTTT
CATGACCTCCCTGCCTACTCTGCTGTGTTGGGTACCTTGATCTCGCTTTT
GCGGTTGCCTTTGTTTTTGTACGTCTGGCTGTCTGCCCATCTGCCGCCTC
TTTGTCTTGTTTGCTCCGTCACTCCCATGCCCTGGTGCGTAGTGCCTGGT
GCTGGTACGTTACACTTTGATTTTTTCATTGGGCGGGTGTGGGAAGCGTC
CTCCTTTATTTTTGTTTTTGTTTTACTTTGATCGGTTCCCGAGGGCTCTT
TTCTCGAACGGTCGGTGCGATACCTGTTCTTTTCTTTCTATCATTTTGTT
GTCTTTT
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Coding sequence (CDS) from alignment at Scaffold_437:53541..54297+

>EsuBft3034_5a-0001 ID=EsuBft3034_5a-0001|Name=EsuBft3034_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=303bp|location=Sequence derived from alignment at Scaffold_437:53541..54297+ (Ectocarpus subulatus male Bft15b)
ATGGCCTTCAACATAGGAGACGAAAGGGAAGGGGGTAAATGGAAAGAGAG
CGCCAAGGACACGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCAT
GGTTCATGAGGAAATGGCACAGGCAGGAGGTGGAAGCGTCTGCGAAGCGC
CAGCGCGCAAGGAAAGCACAAGCAGAGAGTACGGCCATCTCAGGACCGAA
GAGAAAGAGAGCGGTGGGGGGGAAGAAACGGCGACCGGGCACTGCTGTAG
AAGCGAGTAGGGCGGCCGAGGCAGCACTTGTGGCGATCTATGTACCCGGC
TGA
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