EsuBft3034_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3034_3a-0001
Unique NameEsuBft3034_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_437contigScaffold_437:47801..48301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7029.ACYPI083370-PA
ProteomeIdEsuBft3034_3
Protein domainsPTHR19446
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from type-1 retrotransposable element r1 os:bradysia coproph [Automatic annotation]
Nb exon1
Max annot lvl7029.ACYPI083370-PA|-
Length501
Evalue4.73e-14
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3034_3aEsuBft3034_3aEctocarpus subulatus male Bft15bgeneScaffold_437 47801..48301 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3034_3a-0001-exonEsuBft3034_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_437 47801..48301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3034_3a-0001-cdsEsuBft3034_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_437 47801..48301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3034_3a-0001EsuBft3034_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_437 47801..48301 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3034_3a-0001 ID=EsuBft3034_3a-0001|Name=EsuBft3034_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=501bp|location=Sequence derived from alignment at Scaffold_437:47801..48301+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGAAGGGATTAATGGAATGGTAAGAAAGACAGCGCGAGGGGGGTA
TACAGGGGTAGCAACTTTGCGAGGTGTGAACGGTGGATTTGTCAGCAGTG
GGAAGGGAAAAAGGGAAGTTCTAGCAGGACACTACAAGAGACTTGGAGTG
CCCTCGGAGAATGAAGCTTTTGACCAAGCGTTTAAGAAGGAGGTGGACGC
ATGGGCCCAAAAAGAAGAGACATCGAAGGCAGACGTTGGGAACGTAGAAC
TAGAAAAGGAGTTCACTGAGGACGAGGTTGAGGCGTGTGTGAACAAGCTG
AAGTGCCACAAAGCAGCAGGAGCGGATGGGATAGTCAACGAGTTCATGAA
GTTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATACAATTGGG
TGTGGAAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGGTTGTG
AACTTGTTTAAGAAACGAGACAAGACTGACCCAGGAAACTACAGGGGNNN
N
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protein sequence of EsuBft3034_3a-0001

>EsuBft3034_3 ID=EsuBft3034_3|Name=EsuBft3034_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=167bp
MWEGINGMVRKTARGGYTGVATLRGVNGGFVSSGKGKREVLAGHYKRLGV
PSENEAFDQAFKKEVDAWAQKEETSKADVGNVELEKEFTEDEVEACVNKL
KCHKAAGADGIVNEFMKFGGKGMIQLMVLLYNWVWKNEYTPSRWREGVVV
NLFKKRDKTDPGNYRGX
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mRNA from alignment at Scaffold_437:47801..48301+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3034_3a-0001 ID=EsuBft3034_3a-0001|Name=EsuBft3034_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=501bp|location=Sequence derived from alignment at Scaffold_437:47801..48301+ (Ectocarpus subulatus male Bft15b)
ATGTGGGAAGGGATTAATGGAATGGTAAGAAAGACAGCGCGAGGGGGGTA
TACAGGGGTAGCAACTTTGCGAGGTGTGAACGGTGGATTTGTCAGCAGTG
GGAAGGGAAAAAGGGAAGTTCTAGCAGGACACTACAAGAGACTTGGAGTG
CCCTCGGAGAATGAAGCTTTTGACCAAGCGTTTAAGAAGGAGGTGGACGC
ATGGGCCCAAAAAGAAGAGACATCGAAGGCAGACGTTGGGAACGTAGAAC
TAGAAAAGGAGTTCACTGAGGACGAGGTTGAGGCGTGTGTGAACAAGCTG
AAGTGCCACAAAGCAGCAGGAGCGGATGGGATAGTCAACGAGTTCATGAA
GTTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATACAATTGGG
TGTGGAAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGGTTGTG
AACTTGTTTAAGAAACGAGACAAGACTGACCCAGGAAACTACAGGGGNNN
N
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Coding sequence (CDS) from alignment at Scaffold_437:47801..48301+

>EsuBft3034_3a-0001 ID=EsuBft3034_3a-0001|Name=EsuBft3034_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=501bp|location=Sequence derived from alignment at Scaffold_437:47801..48301+ (Ectocarpus subulatus male Bft15b)
ATGTGGGAAGGGATTAATGGAATGGTAAGAAAGACAGCGCGAGGGGGGTA
TACAGGGGTAGCAACTTTGCGAGGTGTGAACGGTGGATTTGTCAGCAGTG
GGAAGGGAAAAAGGGAAGTTCTAGCAGGACACTACAAGAGACTTGGAGTG
CCCTCGGAGAATGAAGCTTTTGACCAAGCGTTTAAGAAGGAGGTGGACGC
ATGGGCCCAAAAAGAAGAGACATCGAAGGCAGACGTTGGGAACGTAGAAC
TAGAAAAGGAGTTCACTGAGGACGAGGTTGAGGCGTGTGTGAACAAGCTG
AAGTGCCACAAAGCAGCAGGAGCGGATGGGATAGTCAACGAGTTCATGAA
GTTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATACAATTGGG
TGTGGAAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGGTTGTG
AACTTGTTTAAGAAACGAGACAAGACTGACCCAGGAAACTACAGGGGNNN
N
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