EsuBft3023_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3023_4a-0001
Unique Name	EsuBft3023_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_210	contig	Scaffold_210:19846..23198 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft3023_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	328
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3023_4a	EsuBft3023_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_210 19846..23198 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3023_4a-0001-exon	agat-exon-87475	Ectocarpus subulatus male Bft15b	exon	Scaffold_210 19846..22627 -
EsuBft3023_4a-0001-exon	EsuBft3023_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_210 22694..23198 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3023_4a-0001-exon	agat-three_prime_utr-12037	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_210 19846..21667 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3023_4a-0001-cds	EsuBft3023_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_210 21668..22627 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3023_4a-0001-exon	agat-five_prime_utr-7644	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_210 22766..23198 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3023_4a-0001	EsuBft3023_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_210 21668..22765 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_210:19846..23198-
coding sequence from alignment at Scaffold_210:19846..23198-

spliced messenger RNA

>EsuBft3023_4a-0001 ID=EsuBft3023_4a-0001|Name=EsuBft3023_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3287bp|location=Sequence derived from alignment at Scaffold_210:19846..23198- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGTGATTGAGAGAGCCCGTGAGAGAGTTGCGGACAAGGTATCGGGTCCAG
TGTACGCAGGGCCAGGCCCCGGGGAATTGTCGATCAACAATTGCGCAGTG
GGGCTTCAGCAGAAAGTCATGAGCGTTCTTCGTACTCTCGATTCTGGAGT
GATCGCGCTTGAACCGGACGTAATTCTGAACGGGTTTTGGGCAACACAAC
CAGACGTTCACACCGGTCGGCGTCGGGAGTTGCTTCCCGATCTACTACAC
GAACACTTGTTGACAAACAACCAAATCACTTAGGCCGACACCGTACAAGT
GTATCGCATATCAGGAGAAGTAGTAGACACCCCACGTGACAGTGTAACGG
GTACCGACTGGCTGCGTCTCATTGTGCGTAAACATGCCTTGACGGGGGGT
GCGGTTGAGTACACTAATGCCGCGTTGCAGGCTATGGTGCTTGGTACGCC
CGAATCCATGCCCATCGCCGCAGCCCGCGTTTTAGCAGCCTTCCGCGCCA
CATTGATGATAGCCTTGTTCGAACGCGTCACCGAGGTACTCCTGCCGAAT
CCGGTTGACAGAGCCGGGGCCAACGGGCTGCTACATGGACGCAAACATTC
TGTCAGCACCACCCTGCAGAAGTTGCGTCAAGAGTCTCACCACCCCATGG
GGGATCACATGAGCCACCGAGGCACGATGGCTGAGGGCCTGTTTCGCGAG
TTTGTAGCAGTTTTGAGCGTGCGTTCCAAGCAATACATGACCCCGCCGAC
CCCCCGCACACCGAACCGCGCGGGCGGGCAGGATCGCCTCTGTGGGGCTA
ACCCTACGCCTCACCACATGTCGATGCCCGAATATCGACAGCTGTTCACC
GCAGATGGCTTGGCGTCGTACAACAACTCGACGCTACCACTCGCCGCGTC
GGGAGGCAGCGCGCCCCGCCGGCCGCCGCCTCCCACCGGGCTAAACTCTG
TTGCCGCCGTAGCGCCGCCCGTTGCTGCCCCAGAGACCCCTTCGTCGGTT
GCCGTCGCAGCGTTCCAGAACCACAAGGCCAGCACGCCCGGCCAGCACGG
TGTTCCTTTCACGGCCAAAGCACCGTCATCGACGGCCGCACCAGCGACAA
CGCCACCAACGGCCGCCACTACGGCCACTGCGGTGACACACCCGCCGGTG
ACTGCACCCCGGTCCGTGATCCTCGATTACCTCATGGAACATGGGATCTG
CTACGCCCACGTGTTCTCGGCCTGCCGTGGACAGGGCCGTTGCAGGTGGC
GACACGACCTACTGCCAGCGTCATTCTACAAGGACGTGCCACGTCCGGCG
AGCCGTGGGCCTACTCACACGCGTCGCGTCGTAGCCGCGTTGACGCCCGC
CCATTACGACACGGCCGTCGCCATGGGCCTCGAGCTTCACGTGTCGGGCA
AGCATCAGGCGGCGATGATGGCAGGGGACATCCCGATGGGACCTCGGGAC
GACGCCGACATGTGAAACGAGGACCCGGGTCTCGCCAACCCGGGGCACCT
TGCATCCGCGAGGGCGGAGCACGGCGCCGGCGATCAGCTGTGGATACGTG
GTGAGATCGGACGAGTTGGGCGTAGACGTAAGCCGTACCCAGTGGAGATT
TTTCTTGATACCGGGGCGGGCGGGGGCAACTACATTTCATTAGAGCTGTG
GTGTCGCGTACGTAGCTTAGCGAGGTGCAGGTTGGACAGACGCTCGGCGA
GAGCGTTGGAAGCAGCGAATCCGTCGGAAAGTGGCGTGCCCCCGATGCGT
ATTCTAGGACATGTCACGATCCCAATCCTGTTCCAAGACGACTCTCAATT
ACGGTTCGTCACGGCCAGAGTAGTACCGGATCGCCCGTACGGTATCATCA
TCGGAGCTGAATATGTTCGACGCAACAAGAGCACGCTTGATTTTGGAGAA
GGCAAAGGCTTTCGACCCACGCCTGACGCGTCCTTCGTACCGTTTCTGTC
GAGGCCGGTAGACCACCCTGCACAACCGTCACCGCTGTCAGCCGCACACG
ACCGCTTTGCTCTCTTGACATGCGACCCGCAACGCGACACTCACCTGTCC
GGCATTACCCCGCTGCCCGAGCTGCCCAGGTATCGTGACGTCGCGTGGGA
GGATGACAGCACTCTGGAATGGTACCTGGTGCTAGGCTCGCGGATGTCAT
CAGGGTTCACTAGTATCGCGATGCAAACTGTAGCGATGTGTCCTCGGCCA
CAGGACAGGCAGTTGGTGATGGTGTTGCCCACGGAACGGTTCGATCTAGA
GAAGGGAGCCACAGTTGGGATTGCACATGCAGTGATGTGGTGGACGCCGG
GAACACCGGTGTACTGCAAGTTGGTAAATCGCGATGCTCGGGTTGTCAAA
GTTACTAACGGTAGCATTTGCGCCAGGATGATCGCCCTCAATGTTCGCGA
CCGTGGCCGTTTCGACTCTTTGTTCAACGATACCCCGTCTACTGTTGACC
CTCCACTCCCTGACCCGGTTGTTGTGCCCACCCGTGACACGAGCGACGAG
ACCTCAGCGGCCTCGCCACCCACTGTACGAGCGGCCGACGCTAACAAGGG
TCAGCTTGGAGCGCTACAGCAGCAAGAGTTGGTCGAGGTTCTGGCCACGT
TCGTTGAGGAAGGCCTATTATTCCCGATCGACCCCAAGAGAATGGCAGCA
TGCGGTGGCAGTGAGTTGGAGCTTCCTTTGATCGACGAGTTTTGTACACC
TCACGTAGCCAAATAACGTCCATTTTCACCCGAGGAGGGACGCATGATTA
GGGCTGAGATTCAACAGTTGCTGGATCGTGCTATCATTCGGCCTTCCATG
TCACCCTGGGCAGCTCAATGCTTGTGTGTTAAGAAAAACGACGGAACAGT
GCGACTGTGTATTTACTGGAGGGTGTTGAACAAGGTTCTCGTATCCGATA
GTGGCGGGCTAGGTGATATGCAAACCATATTCGATGGACGGAAGGGCAAG
CGGTACTTCACTCAGATCGATCTAGCGTCAGGTTTTCATCAAATTGAAAT
CGCCGAAAAGGATCGCTACAAAACAGCCTTCCGTGCCGCAGACGGCATGT
TGTACGAGTTTACACGTGCGGTTTTAGGACTAACAGTTCTACCTGCCGCG
TTCACGCGTCGAGTAAAGTCTGCCTTGGGAATTATCGATGGCGTGTTTAG
CTGATTGGATGACATACTCGTCGCAAACGAAACATGGGAAGAACACCTTG
CTGCACTGGTGCTCGTTCTACCACGCCTTCGTGCTGCTGAACTGTCCGTT
AGCTTTCCGAAATACATTTTCGGGGCTTCGTCCCAAG

protein sequence of EsuBft3023_4a-0001

>EsuBft3023_4 ID=EsuBft3023_4|Name=EsuBft3023_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=343bp
MVLGTPESMPIAAARVLAAFRATLMIALFERVTEVLLPNPVDRAGANGLL
HGRKHSVSTTLQKLRQESHHPMGDHMSHRGTMAEGLFREFVAVLSVRSKQ
YMTPPTPRTPNRAGGQDRLCGANPTPHHMSMPEYRQLFTADGLASYNNST
LPLAASGGSAPRRPPPPTGLNSVAAVAPPVAAPETPSSVAVAAFQNHKAS
TPGQHGVPFTAKAPSSTAAPATTPPTAATTATAVTHPPVTAPRSVILDYL
MEHGICYAHVFSACRGQGRCRWRHDLLPASFYKDVPRPASRGPTHTRRVV
AALTPAHYDTAVAMGLELHVSGKHQAAMMAGDIPMGPRDDADM

mRNA from alignment at Scaffold_210:19846..23198-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3023_4a-0001 ID=EsuBft3023_4a-0001|Name=EsuBft3023_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3353bp|location=Sequence derived from alignment at Scaffold_210:19846..23198- (Ectocarpus subulatus male Bft15b)
GGTGATTGAGAGAGCCCGTGAGAGAGTTGCGGACAAGGTATCGGGTCCAG
TGTACGCAGGGCCAGGCCCCGGGGAATTGTCGATCAACAATTGCGCAGTG
GGGCTTCAGCAGAAAGTCATGAGCGTTCTTCGTACTCTCGATTCTGGAGT
GATCGCGCTTGAACCGGACGTAATTCTGAACGGGTTTTGGGCAACACAAC
CAGACGTTCACACCGGTCGGCGTCGGGAGTTGCTTCCCGATCTACTACAC
GAACACTTGTTGACAAACAACCAAATCACTTAGGCCGACACCGTACAAGT
GTATCGCATATCAGGAGAAGTAGTAGACACCCCACGTGACAGTGTAACGG
GTACCGACTGGCTGCGTCTCATTGTGCGTAAACATGCCTTGACGGGGGGT
GCGGTTGAGTACACTAATGCCGCGTTGCAGGCTATGGTGCTTGGTACGCC
CGAATCCATGCCCATCGCCGCAGCCCGCGTTTTAGCAGCCTTCCGCGCCA
CATTGGTAGATCCTGACCGGCCCTACATCACTGAACAGCGGTTTTTCTGG
CGGTATATCTAGGAAGTGCAGATGATAGCCTTGTTCGAACGCGTCACCGA
GGTACTCCTGCCGAATCCGGTTGACAGAGCCGGGGCCAACGGGCTGCTAC
ATGGACGCAAACATTCTGTCAGCACCACCCTGCAGAAGTTGCGTCAAGAG
TCTCACCACCCCATGGGGGATCACATGAGCCACCGAGGCACGATGGCTGA
GGGCCTGTTTCGCGAGTTTGTAGCAGTTTTGAGCGTGCGTTCCAAGCAAT
ACATGACCCCGCCGACCCCCCGCACACCGAACCGCGCGGGCGGGCAGGAT
CGCCTCTGTGGGGCTAACCCTACGCCTCACCACATGTCGATGCCCGAATA
TCGACAGCTGTTCACCGCAGATGGCTTGGCGTCGTACAACAACTCGACGC
TACCACTCGCCGCGTCGGGAGGCAGCGCGCCCCGCCGGCCGCCGCCTCCC
ACCGGGCTAAACTCTGTTGCCGCCGTAGCGCCGCCCGTTGCTGCCCCAGA
GACCCCTTCGTCGGTTGCCGTCGCAGCGTTCCAGAACCACAAGGCCAGCA
CGCCCGGCCAGCACGGTGTTCCTTTCACGGCCAAAGCACCGTCATCGACG
GCCGCACCAGCGACAACGCCACCAACGGCCGCCACTACGGCCACTGCGGT
GACACACCCGCCGGTGACTGCACCCCGGTCCGTGATCCTCGATTACCTCA
TGGAACATGGGATCTGCTACGCCCACGTGTTCTCGGCCTGCCGTGGACAG
GGCCGTTGCAGGTGGCGACACGACCTACTGCCAGCGTCATTCTACAAGGA
CGTGCCACGTCCGGCGAGCCGTGGGCCTACTCACACGCGTCGCGTCGTAG
CCGCGTTGACGCCCGCCCATTACGACACGGCCGTCGCCATGGGCCTCGAG
CTTCACGTGTCGGGCAAGCATCAGGCGGCGATGATGGCAGGGGACATCCC
GATGGGACCTCGGGACGACGCCGACATGTGAAACGAGGACCCGGGTCTCG
CCAACCCGGGGCACCTTGCATCCGCGAGGGCGGAGCACGGCGCCGGCGAT
CAGCTGTGGATACGTGGTGAGATCGGACGAGTTGGGCGTAGACGTAAGCC
GTACCCAGTGGAGATTTTTCTTGATACCGGGGCGGGCGGGGGCAACTACA
TTTCATTAGAGCTGTGGTGTCGCGTACGTAGCTTAGCGAGGTGCAGGTTG
GACAGACGCTCGGCGAGAGCGTTGGAAGCAGCGAATCCGTCGGAAAGTGG
CGTGCCCCCGATGCGTATTCTAGGACATGTCACGATCCCAATCCTGTTCC
AAGACGACTCTCAATTACGGTTCGTCACGGCCAGAGTAGTACCGGATCGC
CCGTACGGTATCATCATCGGAGCTGAATATGTTCGACGCAACAAGAGCAC
GCTTGATTTTGGAGAAGGCAAAGGCTTTCGACCCACGCCTGACGCGTCCT
TCGTACCGTTTCTGTCGAGGCCGGTAGACCACCCTGCACAACCGTCACCG
CTGTCAGCCGCACACGACCGCTTTGCTCTCTTGACATGCGACCCGCAACG
CGACACTCACCTGTCCGGCATTACCCCGCTGCCCGAGCTGCCCAGGTATC
GTGACGTCGCGTGGGAGGATGACAGCACTCTGGAATGGTACCTGGTGCTA
GGCTCGCGGATGTCATCAGGGTTCACTAGTATCGCGATGCAAACTGTAGC
GATGTGTCCTCGGCCACAGGACAGGCAGTTGGTGATGGTGTTGCCCACGG
AACGGTTCGATCTAGAGAAGGGAGCCACAGTTGGGATTGCACATGCAGTG
ATGTGGTGGACGCCGGGAACACCGGTGTACTGCAAGTTGGTAAATCGCGA
TGCTCGGGTTGTCAAAGTTACTAACGGTAGCATTTGCGCCAGGATGATCG
CCCTCAATGTTCGCGACCGTGGCCGTTTCGACTCTTTGTTCAACGATACC
CCGTCTACTGTTGACCCTCCACTCCCTGACCCGGTTGTTGTGCCCACCCG
TGACACGAGCGACGAGACCTCAGCGGCCTCGCCACCCACTGTACGAGCGG
CCGACGCTAACAAGGGTCAGCTTGGAGCGCTACAGCAGCAAGAGTTGGTC
GAGGTTCTGGCCACGTTCGTTGAGGAAGGCCTATTATTCCCGATCGACCC
CAAGAGAATGGCAGCATGCGGTGGCAGTGAGTTGGAGCTTCCTTTGATCG
ACGAGTTTTGTACACCTCACGTAGCCAAATAACGTCCATTTTCACCCGAG
GAGGGACGCATGATTAGGGCTGAGATTCAACAGTTGCTGGATCGTGCTAT
CATTCGGCCTTCCATGTCACCCTGGGCAGCTCAATGCTTGTGTGTTAAGA
AAAACGACGGAACAGTGCGACTGTGTATTTACTGGAGGGTGTTGAACAAG
GTTCTCGTATCCGATAGTGGCGGGCTAGGTGATATGCAAACCATATTCGA
TGGACGGAAGGGCAAGCGGTACTTCACTCAGATCGATCTAGCGTCAGGTT
TTCATCAAATTGAAATCGCCGAAAAGGATCGCTACAAAACAGCCTTCCGT
GCCGCAGACGGCATGTTGTACGAGTTTACACGTGCGGTTTTAGGACTAAC
AGTTCTACCTGCCGCGTTCACGCGTCGAGTAAAGTCTGCCTTGGGAATTA
TCGATGGCGTGTTTAGCTGATTGGATGACATACTCGTCGCAAACGAAACA
TGGGAAGAACACCTTGCTGCACTGGTGCTCGTTCTACCACGCCTTCGTGC
TGCTGAACTGTCCGTTAGCTTTCCGAAATACATTTTCGGGGCTTCGTCCC
AAG

Coding sequence (CDS) from alignment at Scaffold_210:19846..23198-

>EsuBft3023_4a-0001 ID=EsuBft3023_4a-0001|Name=EsuBft3023_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1032bp|location=Sequence derived from alignment at Scaffold_210:19846..23198- (Ectocarpus subulatus male Bft15b)
ATGGTGCTTGGTACGCCCGAATCCATGCCCATCGCCGCAGCCCGCGTTTT
AGCAGCCTTCCGCGCCACATTGATGATAGCCTTGTTCGAACGCGTCACCG
AGGTACTCCTGCCGAATCCGGTTGACAGAGCCGGGGCCAACGGGCTGCTA
CATGGACGCAAACATTCTGTCAGCACCACCCTGCAGAAGTTGCGTCAAGA
GTCTCACCACCCCATGGGGGATCACATGAGCCACCGAGGCACGATGGCTG
AGGGCCTGTTTCGCGAGTTTGTAGCAGTTTTGAGCGTGCGTTCCAAGCAA
TACATGACCCCGCCGACCCCCCGCACACCGAACCGCGCGGGCGGGCAGGA
TCGCCTCTGTGGGGCTAACCCTACGCCTCACCACATGTCGATGCCCGAAT
ATCGACAGCTGTTCACCGCAGATGGCTTGGCGTCGTACAACAACTCGACG
CTACCACTCGCCGCGTCGGGAGGCAGCGCGCCCCGCCGGCCGCCGCCTCC
CACCGGGCTAAACTCTGTTGCCGCCGTAGCGCCGCCCGTTGCTGCCCCAG
AGACCCCTTCGTCGGTTGCCGTCGCAGCGTTCCAGAACCACAAGGCCAGC
ACGCCCGGCCAGCACGGTGTTCCTTTCACGGCCAAAGCACCGTCATCGAC
GGCCGCACCAGCGACAACGCCACCAACGGCCGCCACTACGGCCACTGCGG
TGACACACCCGCCGGTGACTGCACCCCGGTCCGTGATCCTCGATTACCTC
ATGGAACATGGGATCTGCTACGCCCACGTGTTCTCGGCCTGCCGTGGACA
GGGCCGTTGCAGGTGGCGACACGACCTACTGCCAGCGTCATTCTACAAGG
ACGTGCCACGTCCGGCGAGCCGTGGGCCTACTCACACGCGTCGCGTCGTA
GCCGCGTTGACGCCCGCCCATTACGACACGGCCGTCGCCATGGGCCTCGA
GCTTCACGTGTCGGGCAAGCATCAGGCGGCGATGATGGCAGGGGACATCC
CGATGGGACCTCGGGACGACGCCGACATGTGA