EsuBft3023_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3023_3a-0001
Unique Name	EsuBft3023_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_210	contig	Scaffold_210:16053..18442 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft3023_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	217
Hectar predicted targeting category	mitochondrion
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3023_3a	EsuBft3023_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_210 16053..18442 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3023_3a-0001	EsuBft3023_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_210 16131..16340 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3023_3a-0001-exon	EsuBft3023_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_210 16053..16595 +
EsuBft3023_3a-0001-exon	agat-exon-87474	Ectocarpus subulatus male Bft15b	exon	Scaffold_210 16810..18442 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3023_3a-0001-exon	agat-five_prime_utr-7643	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_210 16053..16130 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3023_3a-0001-cds	EsuBft3023_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_210 16131..16340 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3023_3a-0001-exon	agat-three_prime_utr-12035	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_210 16341..16595 +
EsuBft3023_3a-0001-exon	agat-three_prime_utr-12036	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_210 16810..18442 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_210:16053..18442+
coding sequence from alignment at Scaffold_210:16053..18442+

spliced messenger RNA

>EsuBft3023_3a-0001 ID=EsuBft3023_3a-0001|Name=EsuBft3023_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2176bp|location=Sequence derived from alignment at Scaffold_210:16053..18442+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGCCTACGTGAGATAGTAGCGAAATCCCCCTGTAGTTGTTACAGTTGGA
CCGGTCACCCTTCTTGTACAGCACCTTGATGGTTGCATCCTTCCACTCTC
GCGGAATATCTCCTCCGTTCCACACCATGACGAGGATGGTATGGAGGTGT
CCCAGGACGAAGGGTTCGTCGTTATCGATCTTGAGCAACTCGGCAGGGAG
GGAGTCATGGCCGGGTGCCTTCCAGTTCTTGTTGCCTTTCGTTGCCCGTG
CCACCTCCTCGAGTTCTGGCACATCTCCCAACCGTTGAGTGTCACGTGTC
GCTGGCCGCTGCGTCACTCGTTCGATGATGTCTAGGTTCAGGGTGGGGGG
TTCGGTGTTGAGTAAGGTGTTGAAGAATCTCGCCCACCGCTGGAGGATGT
CTTCCCTGTTCCGGAGCAACACGCTGTTCTCATCCGCGACGAACTTCTGT
CCCCCCGTTTGTCTCCCGCTGAGGCCCACTGATTTGTTGAGGTGTTGGTA
CAGTCCTCGCATGTCGCGATCTTTGTAGATTTCTTCGAGCTCATCACATA
TCCGTCCAGGTAGGCATGAATGCCCGTTTCGACTCCTGTAGCCACCCCCT
TACACGCTGCTTTGAGAACCCTCCACGTCGCTGAGTTCCAGTTGCCCCTC
ATCGCTCGGCGCGCTTCCCGACGTTTGTTAAGGGCCTGCTCCAGCCCTGC
TCGCGTCTCTGGGGTCTCACACCACTCCTGCGTGCGGCGTCTCCGCGGTT
CCTCCCCCAGCGTCGTCCGCGCTGCGTCGAGGAGAGCATTGGTAAAGCCG
GTCGCCAATTCCTCGGCGGTGGTTGTTCGCGCGTCCAGTCGTGTGTCGAG
GTTGAGGAGGAACCGATTAGGCACCGCACACCGTGCTGCTTCGAACTGCA
GTTCCCGTCGGTTGAAGTGCTTCTGTTTCAATTTGGTCCGAATTGCACGG
TTGTGGTCAAGCCTGCCACCGAGGTTGACGGTGGCTACTACCATATTGTG
GTCTGAGTCTGCTTTGACTGGGCGAGCCGGCTGGGGGATGACGACCACGT
TAGCTACTCGGCCGTGATGTGCCTGCCTCGTCAGGATTTAGTCAAGGTGC
TTGCAATCGTTTCCCGACACACCGTTGTATGTGTGCCATATTCCGCCCTT
GCGTGTCTCAAAGAACGTGTTCGTGAGAGCTAGCCTGTTTTCCGTTGCGA
AGTTCAACAGTAGCATGCCATTGTCGTTGAGCTCATCACGCCCGTACATT
CCTATTACCCTTCCGTCCCCTCCGTCCAACCTATCTCCCGTCCGCGCGTT
GGCGTCCAGTAGGACATACACACATTCTTTGGAAGGGATCCTCCGCACGA
GACTGTCAAGTTTTCCCCAGAACACGCGCTTGCTGTCGGCGGTTGAAGGT
TCGGTTGGAGCATACGCGGCTACGAAGTTGACCGCTCCACGGTGGCCTGC
CAACAGAAACCTCATGGCCATTAGGCGTTCGTCGATAAACTCCGTAGTGA
ACGTGGATGTCTTGCACAGTGACTCTTTCACGGCTATCCCCACACCATGG
ACTCCACCAGTCTCCGTGCCACAGCAGAACAACCGGAAACCCACTGCTGC
AAATTCCGTTCGACCTGCCCTTCGTGCCTCCTGCATTCCTACCACCGATA
CGTCTTGTCTCGCTGCCTCGTGTAGAACGCTGCTCGCCCGTATCAATTGG
CCCCGTTTACAGCTAAAGTCCGCACATTCCAGGTTGCTACCCTAAGAAGT
TGACCCTGCTGTCTCTTTCGCGCGGCGCGCGCTGCTCTCTTAGCTAGCCT
ACGCGCCGCTCGACCCCTCCTTTTCCTCCATCTTCCCCTCTTTTTTTTGT
TTTTTTGCTAGTTTCTTGCGAATACTCGGGCTAACGTGATAGTTACCCCG
GTTCGTGGCTTGTTTCCCATAGAGATGTCTTCTTGACCCGGAGCGGTGTG
GCCCTCCATCTCTGGACTCGCTCCTTTCCTCTCTCTGGGGCATACCCCCA
CGGCGTGCGGCCACTCCGCCACCCTCACCGTGCTCTCTGCTGCTGCATAG
CCCCGGTGTCCAAGCCGGGGCGTCAGGATCCAGTCCCATTTTGCAGCTAC
CAAAGCGGGCGGCTAAGGAGCTACCCCGATCTCACGACAGCAGTAACTCC
CAACCGCCAAACTCAGGATCCCCCTC

protein sequence of EsuBft3023_3a-0001

>EsuBft3023_3 ID=EsuBft3023_3|Name=EsuBft3023_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=69bp
MVASFHSRGISPPFHTMTRMVWRCPRTKGSSLSILSNSAGRESWPGAFQF
LLPFVARATSSSSGTSPNR

mRNA from alignment at Scaffold_210:16053..18442+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3023_3a-0001 ID=EsuBft3023_3a-0001|Name=EsuBft3023_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2390bp|location=Sequence derived from alignment at Scaffold_210:16053..18442+ (Ectocarpus subulatus male Bft15b)
TTGCCTACGTGAGATAGTAGCGAAATCCCCCTGTAGTTGTTACAGTTGGA
CCGGTCACCCTTCTTGTACAGCACCTTGATGGTTGCATCCTTCCACTCTC
GCGGAATATCTCCTCCGTTCCACACCATGACGAGGATGGTATGGAGGTGT
CCCAGGACGAAGGGTTCGTCGTTATCGATCTTGAGCAACTCGGCAGGGAG
GGAGTCATGGCCGGGTGCCTTCCAGTTCTTGTTGCCTTTCGTTGCCCGTG
CCACCTCCTCGAGTTCTGGCACATCTCCCAACCGTTGAGTGTCACGTGTC
GCTGGCCGCTGCGTCACTCGTTCGATGATGTCTAGGTTCAGGGTGGGGGG
TTCGGTGTTGAGTAAGGTGTTGAAGAATCTCGCCCACCGCTGGAGGATGT
CTTCCCTGTTCCGGAGCAACACGCTGTTCTCATCCGCGACGAACTTCTGT
CCCCCCGTTTGTCTCCCGCTGAGGCCCACTGATTTGTTGAGGTGTTGGTA
CAGTCCTCGCATGTCGCGATCTTTGTAGATTTCTTCGAGCTCAGTCACAT
ATCCGTCCAGGTAGGCATAAATGCCCGTTTCGACTCCTGTAGCCACTCCC
TTCCACGCTGCTTTGAGAACCCTCCACGTCGCTGAGTTCCAGTTGCCCAT
CATCACCCGGCGCACTTCCCGACGTTTGGTAAGGGCCTGCTCCAGCGCTG
CTCGCGTCTCTGGGGTCTCACACCACTCCTGNTCTTTGTAGATTTCTTCG
AGCTCAGTCACATATCCGTCCAGGTAGGCATGAATGCCCGTTTCGACTCC
TGTAGCCACCCCCTTACACGCTGCTTTGAGAACCCTCCACGTCGCTGAGT
TCCAGTTGCCCCTCATCGCTCGGCGCGCTTCCCGACGTTTGTTAAGGGCC
TGCTCCAGCCCTGCTCGCGTCTCTGGGGTCTCACACCACTCCTGCGTGCG
GCGTCTCCGCGGTTCCTCCCCCAGCGTCGTCCGCGCTGCGTCGAGGAGAG
CATTGGTAAAGCCGGTCGCCAATTCCTCGGCGGTGGTTGTTCGCGCGTCC
AGTCGTGTGTCGAGGTTGAGGAGGAACCGATTAGGCACCGCACACCGTGC
TGCTTCGAACTGCAGTTCCCGTCGGTTGAAGTGCTTCTGTTTCAATTTGG
TCCGAATTGCACGGTTGTGGTCAAGCCTGCCACCGAGGTTGACGGTGGCT
ACTACCATATTGTGGTCTGAGTCTGCTTTGACTGGGCGAGCCGGCTGGGG
GATGACGACCACGTTAGCTACTCGGCCGTGATGTGCCTGCCTCGTCAGGA
TTTAGTCAAGGTGCTTGCAATCGTTTCCCGACACACCGTTGTATGTGTGC
CATATTCCGCCCTTGCGTGTCTCAAAGAACGTGTTCGTGAGAGCTAGCCT
GTTTTCCGTTGCGAAGTTCAACAGTAGCATGCCATTGTCGTTGAGCTCAT
CACGCCCGTACATTCCTATTACCCTTCCGTCCCCTCCGTCCAACCTATCT
CCCGTCCGCGCGTTGGCGTCCAGTAGGACATACACACATTCTTTGGAAGG
GATCCTCCGCACGAGACTGTCAAGTTTTCCCCAGAACACGCGCTTGCTGT
CGGCGGTTGAAGGTTCGGTTGGAGCATACGCGGCTACGAAGTTGACCGCT
CCACGGTGGCCTGCCAACAGAAACCTCATGGCCATTAGGCGTTCGTCGAT
AAACTCCGTAGTGAACGTGGATGTCTTGCACAGTGACTCTTTCACGGCTA
TCCCCACACCATGGACTCCACCAGTCTCCGTGCCACAGCAGAACAACCGG
AAACCCACTGCTGCAAATTCCGTTCGACCTGCCCTTCGTGCCTCCTGCAT
TCCTACCACCGATACGTCTTGTCTCGCTGCCTCGTGTAGAACGCTGCTCG
CCCGTATCAATTGGCCCCGTTTACAGCTAAAGTCCGCACATTCCAGGTTG
CTACCCTAAGAAGTTGACCCTGCTGTCTCTTTCGCGCGGCGCGCGCTGCT
CTCTTAGCTAGCCTACGCGCCGCTCGACCCCTCCTTTTCCTCCATCTTCC
CCTCTTTTTTTTGTTTTTTTGCTAGTTTCTTGCGAATACTCGGGCTAACG
TGATAGTTACCCCGGTTCGTGGCTTGTTTCCCATAGAGATGTCTTCTTGA
CCCGGAGCGGTGTGGCCCTCCATCTCTGGACTCGCTCCTTTCCTCTCTCT
GGGGCATACCCCCACGGCGTGCGGCCACTCCGCCACCCTCACCGTGCTCT
CTGCTGCTGCATAGCCCCGGTGTCCAAGCCGGGGCGTCAGGATCCAGTCC
CATTTTGCAGCTACCAAAGCGGGCGGCTAAGGAGCTACCCCGATCTCACG
ACAGCAGTAACTCCCAACCGCCAAACTCAGGATCCCCCTC

Coding sequence (CDS) from alignment at Scaffold_210:16053..18442+

>EsuBft3023_3a-0001 ID=EsuBft3023_3a-0001|Name=EsuBft3023_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=210bp|location=Sequence derived from alignment at Scaffold_210:16053..18442+ (Ectocarpus subulatus male Bft15b)
ATGGTTGCATCCTTCCACTCTCGCGGAATATCTCCTCCGTTCCACACCAT
GACGAGGATGGTATGGAGGTGTCCCAGGACGAAGGGTTCGTCGTTATCGA
TCTTGAGCAACTCGGCAGGGAGGGAGTCATGGCCGGGTGCCTTCCAGTTC
TTGTTGCCTTTCGTTGCCCGTGCCACCTCCTCGAGTTCTGGCACATCTCC
CAACCGTTGA