EsuBft3023_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3023_2a-0001
Unique NameEsuBft3023_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_210contigScaffold_210:15547..16051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000001213
ProteomeIdEsuBft3023_2
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl33208|Metazoa
Length50
Evalue1.44e-18
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3E41I@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3023_2aEsuBft3023_2aEctocarpus subulatus male Bft15bgeneScaffold_210 15547..16051 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3023_2a-0001-exonEsuBft3023_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_210 15547..16051 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3023_2a-0001-exonagat-three_prime_utr-12034Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_210 15547..15697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3023_2a-0001-cdsEsuBft3023_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_210 15698..15946 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3023_2a-0001-exonagat-five_prime_utr-7642Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_210 15947..16051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3023_2a-0001EsuBft3023_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_210 15698..15946 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3023_2a-0001 ID=EsuBft3023_2a-0001|Name=EsuBft3023_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=505bp|location=Sequence derived from alignment at Scaffold_210:15547..16051- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCCTCATCAAGATCATCACCAACCGTCTAAGCGCCTTCTGCGAAGCCAA
CAACATCCTCCCGGAAAAAACAGTCCGGATTTCGACCCGGGCGATCCACG
GCGACATGCTGTTCGTCTTGCGCCGCCTCCAGGAGCTGGGGCGGAGAAAG
AAAATACCGCTCTACATGTGCTTCGTCGACTTGAACAAGGCGTATGATTC
GGTGGACCGAGAGATGCTATGGAAGGTGGTGGCCAGGGCCGGGATTCCCG
CGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGCCCGG
GTGCGCATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGG
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNN
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protein sequence of EsuBft3023_2a-0001

>EsuBft3023_2 ID=EsuBft3023_2|Name=EsuBft3023_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=83bp
MLFVLRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVVARAGIPAK
LIEVIRQFHDGMRARVRMDDGELSDWFFVTQGX
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mRNA from alignment at Scaffold_210:15547..16051-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3023_2a-0001 ID=EsuBft3023_2a-0001|Name=EsuBft3023_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=505bp|location=Sequence derived from alignment at Scaffold_210:15547..16051- (Ectocarpus subulatus male Bft15b)
TTCCTCATCAAGATCATCACCAACCGTCTAAGCGCCTTCTGCGAAGCCAA
CAACATCCTCCCGGAAAAAACAGTCCGGATTTCGACCCGGGCGATCCACG
GCGACATGCTGTTCGTCTTGCGCCGCCTCCAGGAGCTGGGGCGGAGAAAG
AAAATACCGCTCTACATGTGCTTCGTCGACTTGAACAAGGCGTATGATTC
GGTGGACCGAGAGATGCTATGGAAGGTGGTGGCCAGGGCCGGGATTCCCG
CGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGCCCGG
GTGCGCATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGG
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNN
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Coding sequence (CDS) from alignment at Scaffold_210:15547..16051-

>EsuBft3023_2a-0001 ID=EsuBft3023_2a-0001|Name=EsuBft3023_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=249bp|location=Sequence derived from alignment at Scaffold_210:15547..16051- (Ectocarpus subulatus male Bft15b)
ATGCTGTTCGTCTTGCGCCGCCTCCAGGAGCTGGGGCGGAGAAAGAAAAT
ACCGCTCTACATGTGCTTCGTCGACTTGAACAAGGCGTATGATTCGGTGG
ACCGAGAGATGCTATGGAAGGTGGTGGCCAGGGCCGGGATTCCCGCGAAG
CTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGCCCGGGTGCG
CATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGGCNNN
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